mRNA_E-siliculosus-1a_M_contig71.15290.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: D7FSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV7_ECTSI) HSP 1 Score: 701 bits (1808), Expect = 1.090e-244 Identity = 463/554 (83.57%), Postives = 473/554 (85.38%), Query Frame = 3
Query: 222 MSSKGLDALLALPSTSLLPRDGKDGTADASSTATLGDLRDAKATVYDFWTTRCTNCPAALDALDSIALFRPSVTFVAVNIDDSGAARELVSQAASEGRWTRQGKTRFFLLAHVHLEDDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGGYGEGQRDENDAAAANAATPPGEETAAAGSPAAKGAPRGKATPSPRMECVGDVCKLVRKPKAAXXXXXXXXXXXQA-TGEPAAEATVXXXXXXXXXXXXXXXXXAGVECDGGVCKLVRKPKKTVEQESNDDSVPVGAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPEESERKEEASESPLVVGDAMPS-LQVVPIDGGSATTLDDVRAGGAAVLDFWTTRCVRCPAALDALEGLAAAAAAAT--DDAVTYISVNLDSLEGAREMVSKGRWPTLTHVFAGGDEEESEALLERFKTRAGLKSVPFYVVLARDGRIEQIGGPKAVKLETVSGTNNNGAAAPKAAEGAPPAAAPAKEAPKASVFTMDEDF 1871
MSSKGLDALLALPSTSLL RDGKDG ADASSTATLGDLR+AKATVYDFWTTRCTNCPAALDALDSIAL RPSVTFVAVNIDDS AARELVSQAASEGRWT LAHVHLE+DEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREG YGEGQ+DENDAAAANAA PPGEETAAAGSP A+G PRGKATPSP MECVGDVCKLVRKPKAAXXXXXXXXXXX TGE XXXXXXXXXXXXXXXXXAGVECDGGVCKLVR+PKKT EQES D SV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LQVVPIDGGSATTLDDVRAGG AVLDFWTTRCVRCPAALDALEGL DDAVTYISVNLDSLEGA+E+VSKG WPTLTH G+EEESEALLERFKTRAGLKSVPFYVV+ARDGRIEQIGGPKAVKLETVSG+NNNGAAAPKAAEGAPPAA AKEAPKASVFTMDEDF
Sbjct: 1 MSSKGLDALLALPSTSLLIRDGKDGAADASSTATLGDLRNAKATVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSSAARELVSQAASEGRWTS--------LAHVHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGEGQQDENDAAAANAAAPPGEETAAAGSPTAEGGPRGKATPSPLMECVGDVCKLVRKPKAAXXXXXXXXXXXXXXTGETXXXXXXXXXXXXXXXXXXXXXXXAGVECDGGVCKLVRRPKKTAEQESKDGSVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQVVPIDGGSATTLDDVRAGGPAVLDFWTTRCVRCPAALDALEGLXXXXXXXXTGDDAVTYISVNLDSLEGAQEIVSKGGWPTLTHTIPRGNEEESEALLERFKTRAGLKSVPFYVVVARDGRIEQIGGPKAVKLETVSGSNNNGAAAPKAAEGAPPAAPAAKEAPKASVFTMDEDF 546
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A6H5JLK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK1_9PHAE) HSP 1 Score: 281 bits (718), Expect = 4.420e-85 Identity = 206/269 (76.58%), Postives = 211/269 (78.44%), Query Frame = 3
Query: 549 LAHVHLEDDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGGYGEGQRDENDAAAANAATPPGEETAAAGSPAAKGAPRGKATPSPRMECVGDVCKLVRKPKAAXXXXXXXXXXXQATGEPAAEATVXXXXXXXXXXXXXXXXXAGVECDGGVCKLVRKPKKTVEQESNDDSVPVGAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPEESERKEEASESPLVVGDAMPSLQV 1355
LAHVHL +DEKERAKDILGMRTVPFYVVV EDG+VLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREG YGE Q+DENDAAAANAATPPGEETAAAGSP AKGAPRGKATPSPRMECVGDVCKLVR PKAA XXXXXX QATGE AA AGV +T EQES DDSV AEAS XXXXXXXXXXXXXXXXXXXXXXXXXXXX QP S+RKEEASESPLVVGDAMPSLQV
Sbjct: 4 LAHVHLAEDEKERAKDILGMRTVPFYVVVGEDGEVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGESQQDENDAAAANAATPPGEETAAAGSPTAKGAPRGKATPSPRMECVGDVCKLVRNPKAAAAXXXXXXPHGQATGETAAPPAAPAPSP------------AGVXXXXXXXXXXXXXTRTAEQESKDDSVADVAEASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-QPVVSDRKEEASESPLVVGDAMPSLQV 259
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A7R9WXP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WXP7_9STRA) HSP 1 Score: 100 bits (248), Expect = 6.630e-20 Identity = 55/144 (38.19%), Postives = 85/144 (59.03%), Query Frame = 3
Query: 1338 MPSLQVVPIDGGSATTLDDVRAGGAAVLDFWTTRCVRCPAALDALEGLAAAAAAATDDAVTYISVNLDSLEGAREMVSKG---RWPTLTHVFAGGDEEESEALLERFKTRAGLKSVPFYVVLARDGRIEQIGGPKAVKLETVSG 1760
+P L +V + + +DV G A ++DFWTT+CVRCP+ALD L+ +A + V ++S+ D L+GAR ++ K RW ++H F E+E + E+ K + G KSVPFYVV+ DG I+Q+GG + + + V G
Sbjct: 18 LPQLPLVCLKSADSRNTEDVVRGKATIIDFWTTKCVRCPSALDKLDRMAQEPKYSD---VQFVSICCDKLDGARNIIEKDEDLRWQHVSHFFM---EQEDK---EKAKQQLGFKSVPFYVVVDEDGEIQQMGGERKIDFDEVPG 152
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A835Z494_9STRA (Thioredoxin-like_fold domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z494_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 3.180e-19 Identity = 70/220 (31.82%), Postives = 101/220 (45.91%), Query Frame = 3
Query: 294 GTADASSTATLGDLRDAKATVYDFWTTRCTNCPAALDALDSIALF--RPSVTFVAVNIDDSGAARELVSQAASEGRWTRQGKTRFFLLAHVHLEDDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGGYGEGQRDENDAAAANAATPPGEETAAAGSPAAKGAPRGKATPSPRMECVGDVCKLVRKPKA 947
GT A T L + + DFWTTRCT CP+AL+ LD+ A P++ F++VN+DD AAR L + G+WT + HV +++ +E K+ LGM+ VPFYV+VS +G +L G+ K +P++ + L + N +PP T GKA M+CVG VC L R+ KA
Sbjct: 13 GTGSAPGTRLSALLGAKEFALLDFWTTRCTRCPSALNKLDAAAAAGATPNIAFISVNLDDFEAARALTA-----GKWTN--------MLHVAVDEGAREILKERLGMQAVPFYVLVSREGMILASGAPKDVPVEHLRELLNGNCE----------------------------NIPSPPSPSTT------------GKAALGDSMQCVGGVCPLPRRKKA 179
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A6V1TV98_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TV98_HETAK) HSP 1 Score: 93.2 bits (230), Expect = 2.990e-18 Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 3
Query: 273 LPRDGKDGTADASSTATLGDLRDAKATVYDFWTTRCTNCPAALDALDSIALFRPSVTFVAVNIDDSGAARELVSQAASEGRWTRQGKTRFFLLAHVHLEDDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDS 710
L D + TA+ +S L L K T+ DFW+T C CPAAL L+ ++ P + FVA+NIDD + ++S+ W + HV+ EDD+KE A + +G++ +P+Y+V+SEDG V++ G++K L + L S
Sbjct: 16 LEEDKDEETAEETS---LLSLLAGKPTIVDFWSTFCKKCPAALTKLNELSQAHPEINFVAINIDDYEGSWNMISEREE---WQH--------ITHVYAEDDQKEIAMEKVGLKFLPYYLVLSEDGTVIQAGNSKDLDFNDLPRLFS 147
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A7S2UZB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZB1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.230e-17 Identity = 48/150 (32.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query: 255 LPSTSLLPRDGKDGTADASSTATLGDLRDAKATVYDFWTTRCTNCPAALDALDSIALFRPSVTFVAVNIDDSGAARELVSQAASEGRWTRQGKTRFFLLAHVHLEDDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESL 704
+P+ SLL ++ +A T+ + D + K V DFW+T C CP LD ++++A P + F+A+NIDD AA++++S G+W + H + +DEKE A + LG++ +P+Y +++EDG V++ G+ K + + S+
Sbjct: 6 VPNLSLLHITSENCEDNAEQTSLI-DFLNGKPAVVDFWSTFCIKCPEGLDKMNALAAQHPDIMFIALNIDDFEAAQQIIS-----GKWEN--------IHHFFITEDEKEIAMEELGLKKLPYYTIIAEDGIVIQTGTKKDIKFDELGSI 141
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A7S1VHT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VHT6_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 4.550e-17 Identity = 58/144 (40.28%), Postives = 82/144 (56.94%), Query Frame = 3
Query: 1335 AMPSLQVVPIDGGSATTLDDVRAGGAAVLDFWTTRCVRCPAALDALEGLAAAAAAATDDAVTYISVNLD-SLEGAREMVSKG----RWPTLTHV-FAGGDEEESEALLERFKTRAGLKSVPFYVVLARDGRIEQIGGPKAVKLE 1748
++P+L ++ +D +TL +V G V+DFWTTRC RCPAALD L+ +A DD VT+ S+ D SL+GARE++ + RW + H F G +++ ER K G +SVPFYV + +G I G PK V E
Sbjct: 8 SLPALPLISLDTAEESTLAEVFRGKNIVIDFWTTRCTRCPAALDKLQEMAMNDTYGEDD-VTFASICCDASLDGAREILEEPSQERRWNKIQHYSFLFGLQDK-----ERAKQLFGFQSVPFYVFVDSNGTITHKGSPKQVDFE 145
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A7S2H2C3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2C3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 5.670e-16 Identity = 66/186 (35.48%), Postives = 94/186 (50.54%), Query Frame = 3
Query: 1335 AMPSLQVVPIDGGSA-TTLDDVRAGGAAVLDFWTTRCVRCPAALDALEGLAAAAAAATDDAVTYISVNLDSLEGAREMVSKGRWPTLTHVFAGGDEEESEALLERFKTRAGLKSVPFYVVLARDGRIEQIGGPKAVKLETVSG------TNNNGAAAPKAAEGAPPAAAPAKEAPKASVFTMDEDF 1871
++P L++ +D S TTL + +G V+DFWTTRC RCPAAL L A ++S+ LD E A+E+V +G W +TH FA A + K+ G SVPFYVV ++D + G + V ++++ G TNN+ EG P AAPA F++DEDF
Sbjct: 10 SLPDLELRLLDEASTPTTLSTLSSGKPTVIDFWTTRCQRCPAALTKLNEFAEEWCKGHQ--AVFLSICLDDEEFAKELVEEGEWEHMTHAFA------PVASKDMAKSVFGFTSVPFYVVSSQDSEVLIAGSGQQVSIQSLPGLLGPQKTNNH------VREGEP--AAPA--------FSLDEDF 171
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A7S4A6W9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6W9_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.670e-13 Identity = 69/180 (38.33%), Postives = 93/180 (51.67%), Query Frame = 3
Query: 1335 AMPSLQVVPIDGGS-ATTLDDVRAGGAAVLDFWTTRCVRCPAALDALEGLAAAAAAATDDAVTYISVNLDSLEGAREMVSKGRWPTLTHVFAGGDEEESEALLERFKTRAGLKSVPFYVVLARDGRIEQIGGPKAVKLETVSGTNNNGAAAPKAAEGAPPAAAPAKEAPKASVFTMDEDF 1871
A P L + D S A++L +RAG ++DFWTTRC RCPA LD L+ +A A D V + ++ LD + A+E+V + W +TH GG + E++ E+ K G SVP V++ DG G A+K T G N A A K E AP A A A FTMD+DF
Sbjct: 7 AAPDLPLTLFDDDSTASSLTKLRAGKPLIIDFWTTRCERCPACLDKLDKIAEA----LGDKVVFAALCLDDPDFAQELVDEHDWDHITH---GGMDLETK---EKAKAAFGFNSVPHLVIIGADGTTLFCGS--ALKA-TADGINE--ALAGK--ENAPQPVAAA-----APSFTMDDDF 164
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Match: A0A1Z5KNM6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNM6_FISSO) HSP 1 Score: 79.3 bits (194), Expect = 2.630e-13 Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 3
Query: 351 TVYDFWTTRCTNCPAALDALDSIALFRPSVTFVAVNIDDSGAARELVSQAASEGRWTRQGKTRFFLLAHVHLEDDEKERAKDILGMRTVPFYVVVSEDGKVLRHGS 668
TV DFWTTRCTNCP ALD L +A +V F ++ D ARE++ + + RW+ + H +E +KE K I G + VPFYVV+++ ++ ++G+
Sbjct: 30 TVIDFWTTRCTNCPDALDKLQHLAATSSNVRFASICCDSLDGAREIIGRH-DDMRWSS--------VHHYFMEHADKELCKQIFGFKKVPFYVVLNDRNEITQYGN 126 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig71.15290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig71.15290.1 >prot_E-siliculosus-1a_M_contig71.15290.1 ID=prot_E-siliculosus-1a_M_contig71.15290.1|Name=mRNA_E-siliculosus-1a_M_contig71.15290.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=551bp MSSKGLDALLALPSTSLLPRDGKDGTADASSTATLGDLRDAKATVYDFWTback to top mRNA from alignment at E-siliculosus-1a_M_contig71:434149..441179+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig71.15290.1 ID=mRNA_E-siliculosus-1a_M_contig71.15290.1|Name=mRNA_E-siliculosus-1a_M_contig71.15290.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7031bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig71:434149..441179+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig71:434149..441179+ >mRNA_E-siliculosus-1a_M_contig71.15290.1 ID=mRNA_E-siliculosus-1a_M_contig71.15290.1|Name=mRNA_E-siliculosus-1a_M_contig71.15290.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig71:434149..441179+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |