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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig7.15202.1 vs. uniprot
Match: D8LSQ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ4_ECTSI) HSP 1 Score: 396 bits (1017), Expect = 3.020e-133 Identity = 252/365 (69.04%), Postives = 259/365 (70.96%), Query Frame = 2
Query: 320 MSLAQSAVKGTTTEASSYSSSDVPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPFPVGRSTAINSXXXXXXXXXXXXXXXXXEAFLFSSSTATTTSRXXXXXXXXXXXXDYCDSGDAWCGTDDLCQQCQSLTTSGGNFTCPEAYPAAAASGNSSACEQLAATFCCFYGDAPTAQRCLGNEPTALYWECVLTGPASGCSLEDMPCYSGNSSAAQTQPFPSPSPTEAATTAPVQFGSGGEMEGVFTVSPTGAPTAFDRGSSLAGTASPTPAAPIASAGGDVDEAPAATRSPVAGNDDTESGGVGAGSGFNSAGTSSGGGDLDGAAEEAGDGSAACVAWSAATAVPRAVVTLGVALFLAARHAAAK 1414
MSLAQSAV+GTTTEA VPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPFPV RS XXXXXXXXXXXX EAFLFS+ST T+ S DYCDSGDAWCGTDDLCQ+CQSLTTSGG+ TC EAYPAAAASGNSSACEQLAATFCC+YGDA TAQRCLGNEPTALYWECVLTGPA GCSLEDMPCYSGNSSAAQTQP G EAPAATRSPVAGNDDT SGG+GAGSGFNSAGTSSGGGD DGAAEEAGDG AA VAWS ATAVPRAVVTLGV LFLAARHAAAK
Sbjct: 1 MSLAQSAVQGTTTEAXXXXXXXVPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPFPVRRSAXXXXXXXXXXXXXXXX-----EAFLFSNSTDTSYS--------DTSTYDYCDSGDAWCGTDDLCQECQSLTTSGGSLTCREAYPAAAASGNSSACEQLAATFCCYYGDASTAQRCLGNEPTALYWECVLTGPAFGCSLEDMPCYSGNSSAAQTQPXXXXXXXXXXXXXXXXXXXXXXXXG---------------------------------------EAPAATRSPVAGNDDTGSGGIGAGSGFNSAGTSSGGGDFDGAAEEAGDG-AARVAWSTATAVPRAVVTLGVTLFLAARHAAAK 312
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 1251 |
| Model size | 1417 |
| Exons | 3 |
| Ec32 ortholog | Ec-15_003010.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622935944.176183-CDS-E-siliculosus-1a_M_contig7:2206221..2206752 | 1622935944.176183-CDS-E-siliculosus-1a_M_contig7:2206221..2206752 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig7 2206222..2206752 - |
| 1696250858.0476067-CDS-E-siliculosus-1a_M_contig7:2206221..2206752 | 1696250858.0476067-CDS-E-siliculosus-1a_M_contig7:2206221..2206752 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig7 2206222..2206752 - |
| 1622935944.1946814-CDS-E-siliculosus-1a_M_contig7:2207084..2207804 | 1622935944.1946814-CDS-E-siliculosus-1a_M_contig7:2207084..2207804 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig7 2207085..2207804 - |
| 1696250858.0648282-CDS-E-siliculosus-1a_M_contig7:2207084..2207804 | 1696250858.0648282-CDS-E-siliculosus-1a_M_contig7:2207084..2207804 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig7 2207085..2207804 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622935944.2112331-UTR-E-siliculosus-1a_M_contig7:2207804..2207835 | 1622935944.2112331-UTR-E-siliculosus-1a_M_contig7:2207804..2207835 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig7 2207805..2207835 - |
| 1696250858.073475-UTR-E-siliculosus-1a_M_contig7:2207804..2207835 | 1696250858.073475-UTR-E-siliculosus-1a_M_contig7:2207804..2207835 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig7 2207805..2207835 - |
| 1622935944.2257748-UTR-E-siliculosus-1a_M_contig7:2210248..2210383 | 1622935944.2257748-UTR-E-siliculosus-1a_M_contig7:2210248..2210383 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig7 2210249..2210383 - |
| 1696250858.0818594-UTR-E-siliculosus-1a_M_contig7:2210248..2210383 | 1696250858.0818594-UTR-E-siliculosus-1a_M_contig7:2210248..2210383 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig7 2210249..2210383 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig7.15202.1 >prot_E-siliculosus-1a_M_contig7.15202.1 ID=prot_E-siliculosus-1a_M_contig7.15202.1|Name=mRNA_E-siliculosus-1a_M_contig7.15202.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=417bp
MGSGAERSTTTIAPHGQRSWGPAAAATSMWRGADSLLLLLLLTLLLTTRP TMSLAQSAVKGTTTEASSYSSSDVPPTMLTKSAIAYNDDDGDALGNDDDE PEPFPEPFPVGRSTAINSAAVAFNDDDGEALGHDDEAFLFSSSTATTTSR STTTSYSDTSTYDYCDSGDAWCGTDDLCQQCQSLTTSGGNFTCPEAYPAA AASGNSSACEQLAATFCCFYGDAPTAQRCLGNEPTALYWECVLTGPASGC SLEDMPCYSGNSSAAQTQPFPSPSPTEAATTAPVQFGSGGEMEGVFTVSP TGAPTAFDRGSSLAGTASPTPAAPIASAGGDVDEAPAATRSPVAGNDDTE SGGVGAGSGFNSAGTSSGGGDLDGAAEEAGDGSAACVAWSAATAVPRAVV TLGVALFLAARHAAAK* back to topmRNA from alignment at E-siliculosus-1a_M_contig7:2206222..2210383- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig7.15202.1 ID=mRNA_E-siliculosus-1a_M_contig7.15202.1|Name=mRNA_E-siliculosus-1a_M_contig7.15202.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4162bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:2206222..2210383- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) AGACCCGTCAACTTGGGTCGGGAGTGTTTGCGGAGCCATGCACTTAAAAT
AACTGCTGCGCGGGGATCGGGTTGCTTTCGGGCCTCAGCTGCTGTGTATA
AATCCGTTCTTCTTTGGCTGGAGAGAGACTGCAAGGTGAGAACACCGCTC
AGCGTTTGCGGCGAACTGCCGTCGATGTCGCCTAGCTGACGCTTGGTGCA
AGACCGAACGAGTACAAAAGCCGTTGACGGTCATTGGTCGTGCCTCTGCT
GTGTATTGTAAATCGTATCTTAGCTGCTGGGCACATGTATGTGCAGGAGA
GAGCTCGTCCGGAAGGTTGCTGAATGCAGCAGCTCATCACCGTTGCCACT
GAATTTCGGTTGCAAACGACGCACGCTATCCAGGCTCTGCCTGTACCGCA
CCACACAGCTGTTGGAAAGGCACGGTGGATCAGGGTGTTGTGTTTGTGCG
AATTTCGCGGGAAAAGCCTGCCTCGTCGTGGCCGTGGTCGGTTGCACCGG
CCGTGAGTGAACGTTAGCCCTTCAATCGGCCGTTGTAGGAGAGTCAACAA
CGGTGGGGTCAAGCACTTTTTCCAGGATCTTTGCTGCTTTGTTGTACCAC
ACGAGCTGAATATATCGTCCAGCGTCATCTACTACTGCCGTATGGGAATG
TCGCCGTTGGTCTATTTTTCGGTGTGCTGGTCGTGTGTGGTCCATTTGCA
GCCCCGCAGCTACAGCAGTAGCTGGCAGGGGCAATTTACGCGCAAGATGT
TTCGCCCCCCGCACAACATTATGAGCCGTGTGCGGCTCACCACCCTGCAT
CTCTGTCCACACAACAAACCGTCCACCACCCTGCGTCTGCGAGTGGGTTC
TCGAGATGTTTTTTCAACGACAGTGTCGCCGGCTCTTTGTGGTCGTGTCG
GATCGTCCACGTGGTAAAGTACCGAAGGAAGATGATAGCCACCAACAACA
ACATATGCCGACGACTCACAGACGCGTTACTGCTGTATCGACACTGGTTG
CCAAACACGTTGCTCCTGGCGAAACTATTGTTCGTTGTAACATGTACATA
GACCTACGTACTGCTGCACACAGCATATGTTCTCTCTCACTCTTGAGAGT
ATGCCACGTGCTGCTCGGCTTATTGGTGTCGTTGGGAGCGAGATGCACAA
TCTCACTCAGTACGTTTTGCCCATACAATTGTACTGCTGCTGTGTAGACG
AGACGGTATACTAAGTTACAAGCCAGGAGAGGGTTGTACAACTGCTGTAT
GTACTGCTTTTACAAAACGGTAACCATGTATCCATCATATGATCAACAGG
AAAAGCTAGACACACCTGCAGACTTCTTTTATTCCGTCTTCATGTTTATT
GAAGCAAAGTCCAAGGGATGGATGATGGAAGAGCATCGTAATTCCAAGCG
TGATAATAGCGCTCTTCGGCGCCTTGAAACGTCTGGCTTCAGCTGGTTTA
GGCCGTCTTCTTGTCATCACACCGCCACCGACCGCCTTTAACACTGGGGA
TTCTATATTGGAAGAGTGGCATGACAGACGACCCTTGAATTTTCTTCCGA
ATTTGGAGCGGTATTATCGTCGTGCAGGGCGCCTCTCTCGACGAACGATT
ACACACAGCAGACAGGTCGGGTATTATTATTCTTTTTTCATTGTATTTTA
CGTGTTGCCACCAAACGAAACGAAACATCAGCAAACGAATAAATCTATGA
ATAAAATTATTGTTGTTGTTGTTGGCTTCACATTAAATCATTAAATCCTT
GTACAGAAGCGATATGAACTTCGAGTCTACTACTGCTGTACTTTTTCTTT
CCCAATCCCCGCAAATCCTCGCACAACCCCAGTGATGACTCCGATGTGCT
GAATCAGACCGTATACCCTCTGGCAGGCTCACCAGAATCCATTTCGGACG
GTACCGTGTTTGTGATGGACCGCCTACGCAGGATTAAGAGTATCTAGAAA
AGGAATAGGGAGGGGGCACGCAGACCCTATCCCTAACCAAGCACGGATTG
AATATATACGTTATCCCACATGTTCGCTTAATCAAGTTTGCTCTGCGTAG
ACTACGGTTTTCGATAGACAGAAAAGAAGTAGTCAGGATAGGGCAGAAGT
GACAAACTATTTTTACGAGTGTATGCACTCTTTGGGTGTAGTTGGCTTGC
GAGCACGGAAGGCGTCCGCGTCAGTTAGACCATCACGGATACCATAAGGT
ACTGAGGGGAGACCGGTTAACATGTGAAGACGTCAAGGACAACAACGCAC
GCATATACCACACTGGCGAAGCTTCAAGCTTCAGTAATCCTAACACAACA
TGAGGTCCCCTGTGAGTAACGGGCGGGAGAAGACAAGCTGGTTGTGTCGA
TCTTCAGAATCCGACGATGTGTCCGGGGAGGTGCAGGAACCGACGTTTGT
ACGTGCAATGCAGATACGTTTTTCGGAAAATTCCGAAATTCCAACAACAG
TGAAGTCCGTGTGCACGATTCATATATTCGGCGAAGACTTCAACGTACTG
CATTGCGGGTGCTGCACATGCGAACGATACTTTCTTTTTTTTTCGCAGGT
CTCGGGGGATTAAAGCAGAGCGACCAACAATGGGGTCGGGGGCGGAGCGG
AGCACAACAACAATCGCGCCACATGGGCAACGTTCGTGGGGGCCAGCAGC
AGCAGCAACAAGCATGTGGCGAGGGGCGGATTCCCTCCTCCTCCTCCTCC
TCCTGACGCTTCTGCTGACCACACGCCCCACCATGAGCTTGGCCCAATCG
GCCGTCAAAGGAACCACCACCGAAGCCTCCTCTTATTCTTCTTCGGATGT
TCCGCCAACAATGCTGACGAAGTCCGCCATCGCGTACAACGACGACGACG
GCGACGCCCTGGGGAACGACGACGACGAACCCGAACCGTTCCCCGAACCG
TTCCCCGTCGGGCGCAGCACTGCCATCAACAGCGCCGCCGTCGCGTTCAA
CGACGACGACGGCGAGGCCTTGGGCCACGACGACGAGGCTTTCCTCTTCA
GCAGCAGCACCGCCACCACAACCAGCCGCAGCACCACCACCAGCTACTCC
GACACGTCCACCTACGACTACTGCGACAGCGGCGACGCCTGGTGCGGAAC
GGACGATCTCTGCCAACAGTGTCAGTCCCTCACCACTTCCGGCGGGAACT
TTACGTGCCCGGAGGCCTACCCCGCGGCCGCCGCGAGCGGCAACAGCAGC
GCGTGCGAGCAGCTCGCTGCCACGTTCTGCTGTTTCTACGGAGACGCCCC
CACGGCCCAGCGCTGCCTGGGCAACGAGCCCACCGCCCTCTACTGGGAGG
TGAGCGCGCACAACGTTTTCGAGCGGGGGGGCGATCGTGAGTGGAGGGCG
TGGTTCCCGTCGGGCTCTCAGGCTATGCTTGTTCTTCGGGCGATCGGGGT
CACCCGCCCGCAAACCTGATTCGTCTGTCTCTAGAAAATATACGTGCAAT
CAAAGCGAGACTGGTGTGCCCATTCGAGATAATACCACAGTCGAAGGGGA
CGTGTTGAAGTGAATGGGATGTTTTTTGCTCGGCCGCAAACATTTTAGCA
TTGCATAGCAACGTTCCGCTTGGTATTTCGAAGCTCATCCCCCCTCTCCC
TTCCGCCTCCCCCCCCCCAACAAAAAAACAGTGCGTCCTCACCGGCCCCG
CTTCCGGCTGCTCGCTGGAAGACATGCCGTGCTACAGCGGCAACTCGAGC
GCCGCGCAGACCCAACCCTTCCCCAGCCCGTCTCCCACAGAGGCGGCGAC
AACGGCGCCCGTGCAGTTCGGTTCCGGAGGTGAGATGGAAGGCGTTTTCA
CCGTCTCCCCTACCGGCGCGCCTACGGCATTCGATCGAGGTTCGTCCTTG
GCGGGGACCGCTAGCCCAACGCCCGCAGCTCCGATCGCTTCAGCAGGCGG
TGATGTCGACGAGGCTCCGGCGGCGACTCGATCGCCGGTGGCGGGCAACG
ACGACACTGAAAGCGGCGGCGTTGGTGCTGGTAGCGGCTTCAACTCGGCA
GGCACCTCGTCGGGCGGGGGCGACTTGGACGGGGCTGCGGAGGAGGCGGG
GGACGGCAGTGCCGCTTGCGTTGCTTGGTCTGCGGCAACTGCCGTGCCCC
GCGCGGTTGTTACCCTTGGCGTCGCCCTTTTCCTGGCGGCGAGGCATGCT
GCTGCAAAGTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:2206222..2210383- >mRNA_E-siliculosus-1a_M_contig7.15202.1 ID=mRNA_E-siliculosus-1a_M_contig7.15202.1|Name=mRNA_E-siliculosus-1a_M_contig7.15202.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2502bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:2206222..2210383- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGGGTCGGGGGCGGAGCGGAGCACAACAACAATCGCGCCACATGGGCA ACGTTCGTGGGGGCCAGCAGCAGCAGCAACAAGCATGTGGCGAGGGGCGG ATTCCCTCCTCCTCCTCCTCCTCCTGACGCTTCTGCTGACCACACGCCCC ACCATGAGCTTGGCCCAATCGGCCGTCAAAGGAACCACCACCGAAGCCTC CTCTTATTCTTCTTCGGATGTTCCGCCAACAATGCTGACGAAGTCCGCCA TCGCGTACAACGACGACGACGGCGACGCCCTGGGGAACGACGACGACGAA CCCGAACCGTTCCCCGAACCGTTCCCCGTCGGGCGCAGCACTGCCATCAA CAGCGCCGCCGTCGCGTTCAACGACGACGACGGCGAGGCCTTGGGCCACG ACGACGAGGCTTTCCTCTTCAGCAGCAGCACCGCCACCACAACCAGCCGC AGCACCACCACCAGCTACTCCGACACGTCCACCTACGACTACTGCGACAG CGGCGACGCCTGGTGCGGAACGGACGATCTCTGCCAACAGTGTCAGTCCC TCACCACTTCCGGCGGGAACTTTACGTGCCCGGAGGCCTACCCCGCGGCC GCCGCGAGCGGCAACAGCAGCGCGTGCGAGCAGCTCGCTGCCACGTTCTG CTGTTTCTACGGAGACGCCCCCACGGCCCAGCGCTGCCTGGGCAACGAGC CCACCGCCCTCTACTGGGAGATGGGGTCGGGGGCGGAGCGGAGCACAACA ACAATCGCGCCACATGGGCAACGTTCGTGGGGGCCAGCAGCAGCAGCAAC AAGCATGTGGCGAGGGGCGGATTCCCTCCTCCTCCTCCTCCTCCTGACGC TTCTGCTGACCACACGCCCCACCATGAGCTTGGCCCAATCGGCCGTCAAA GGAACCACCACCGAAGCCTCCTCTTATTCTTCTTCGGATGTTCCGCCAAC AATGCTGACGAAGTCCGCCATCGCGTACAACGACGACGACGGCGACGCCC TGGGGAACGACGACGACGAACCCGAACCGTTCCCCGAACCGTTCCCCGTC GGGCGCAGCACTGCCATCAACAGCGCCGCCGTCGCGTTCAACGACGACGA CGGCGAGGCCTTGGGCCACGACGACGAGGCTTTCCTCTTCAGCAGCAGCA CCGCCACCACAACCAGCCGCAGCACCACCACCAGCTACTCCGACACGTCC ACCTACGACTACTGCGACAGCGGCGACGCCTGGTGCGGAACGGACGATCT CTGCCAACAGTGTCAGTCCCTCACCACTTCCGGCGGGAACTTTACGTGCC CGGAGGCCTACCCCGCGGCCGCCGCGAGCGGCAACAGCAGCGCGTGCGAG CAGCTCGCTGCCACGTTCTGCTGTTTCTACGGAGACGCCCCCACGGCCCA GCGCTGCCTGGGCAACGAGCCCACCGCCCTCTACTGGGAGTGCGTCCTCA CCGGCCCCGCTTCCGGCTGCTCGCTGGAAGACATGCCGTGCTACAGCGGC AACTCGAGCGCCGCGCAGACCCAACCCTTCCCCAGCCCGTCTCCCACAGA GGCGGCGACAACGGCGCCCGTGCAGTTCGGTTCCGGAGGTGAGATGGAAG GCGTTTTCACCGTCTCCCCTACCGGCGCGCCTACGGCATTCGATCGAGGT TCGTCCTTGGCGGGGACCGCTAGCCCAACGCCCGCAGCTCCGATCGCTTC AGCAGGCGGTGATGTCGACGAGGCTCCGGCGGCGACTCGATCGCCGGTGG CGGGCAACGACGACACTGAAAGCGGCGGCGTTGGTGCTGGTAGCGGCTTC AACTCGGCAGGCACCTCGTCGGGCGGGGGCGACTTGGACGGGGCTGCGGA GGAGGCGGGGGACGGCAGTGCCGCTTGCGTTGCTTGGTCTGCGGCAACTG CCGTGCCCCGCGCGGTTGTTACCCTTGGCGTCGCCCTTTTCCTGGCGGCG AGGCATGCTGCTGCAAAGTAGTGCGTCCTCACCGGCCCCGCTTCCGGCTG CTCGCTGGAAGACATGCCGTGCTACAGCGGCAACTCGAGCGCCGCGCAGA CCCAACCCTTCCCCAGCCCGTCTCCCACAGAGGCGGCGACAACGGCGCCC GTGCAGTTCGGTTCCGGAGGTGAGATGGAAGGCGTTTTCACCGTCTCCCC TACCGGCGCGCCTACGGCATTCGATCGAGGTTCGTCCTTGGCGGGGACCG CTAGCCCAACGCCCGCAGCTCCGATCGCTTCAGCAGGCGGTGATGTCGAC GAGGCTCCGGCGGCGACTCGATCGCCGGTGGCGGGCAACGACGACACTGA AAGCGGCGGCGTTGGTGCTGGTAGCGGCTTCAACTCGGCAGGCACCTCGT CGGGCGGGGGCGACTTGGACGGGGCTGCGGAGGAGGCGGGGGACGGCAGT GCCGCTTGCGTTGCTTGGTCTGCGGCAACTGCCGTGCCCCGCGCGGTTGT TACCCTTGGCGTCGCCCTTTTCCTGGCGGCGAGGCATGCTGCTGCAAAGT AG back to top
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