mRNA_E-siliculosus-1a_M_contig7.15181.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15181.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15181.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:1989156..1989782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size606
Model size609
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935899.8607311-CDS-E-siliculosus-1a_M_contig7:1989157..19896771622935899.8607311-CDS-E-siliculosus-1a_M_contig7:1989157..1989677Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1989158..1989677 -
1696250839.483559-CDS-E-siliculosus-1a_M_contig7:1989157..19896771696250839.483559-CDS-E-siliculosus-1a_M_contig7:1989157..1989677Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1989158..1989677 -
1622935899.8812783-CDS-E-siliculosus-1a_M_contig7:1989696..19897821622935899.8812783-CDS-E-siliculosus-1a_M_contig7:1989696..1989782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1989697..1989782 -
1696250839.4914584-CDS-E-siliculosus-1a_M_contig7:1989696..19897821696250839.4914584-CDS-E-siliculosus-1a_M_contig7:1989696..1989782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1989697..1989782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15181.1prot_E-siliculosus-1a_M_contig7.15181.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 1989158..1989782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15181.1

>prot_E-siliculosus-1a_M_contig7.15181.1 ID=prot_E-siliculosus-1a_M_contig7.15181.1|Name=mRNA_E-siliculosus-1a_M_contig7.15181.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=202bp
WRLRRQTNACSPGETFPMPSYTKQQQQQHSNNSSSRFPLSATKRAVARSE
KRVPWRASTPTGRRATTTNTIRSPRLTLEHRSARPPTASLGLDRDISNSP
PLSPSYLPIPGLISVRSSNSADNSFRFRQHPRQATRRAQRAKFLGNFPQR
ASKGETETRETRARKGRNDSKHRWHKPSPFSFSPTTTKTKHTRAQAMQST
LT
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mRNA from alignment at E-siliculosus-1a_M_contig7:1989156..1989782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15181.1 ID=mRNA_E-siliculosus-1a_M_contig7.15181.1|Name=mRNA_E-siliculosus-1a_M_contig7.15181.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=627bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1989156..1989782- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGGCGTTTGCGGCGACAAACAAACGCGTGTAGTCCCGGCGAGACGTTTCC
GATGCCGTCATACACGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGTAGCAACAACAGCAGCAGTCGTTTTCCCCTATCCGCCACTAAACG
TGCTGTTGCTCGTTCTGAGAAACGCGTGCCCTGGCGCGCTTCGACACCAA
CCGGTCGCCGGGCAACAACAACAAACACCATTCGTTCGCCACGCCTCACA
CTCGAACACCGGTCCGCACGCCCACCGACAGCAAGCCTTGGGCTTGATCG
AGACATTTCTAATTCTCCTCCTCTTTCCCCATCATACCTACCTATCCCCG
GCCTCATCAGCGTACGGTCTTCGAATTCTGCAGACAACAGTTTTCGCTTC
CGACAACACCCAAGACAGGCAACACGCCGCGCACAACGTGCGAAATTTCT
TGGAAATTTCCCGCAGCGAGCGAGCAAGGGCGAGACAGAGACAAGAGAGA
CCAGAGCACGAAAAGGGAGGAACGACTCTAAACATCGATGGCATAAACCG
TCCCCTTTTTCTTTCTCCCCAACAACGACGAAAACAAAGCACACGCGGGC
ACAGGCTATGCAGTCGACACTCACTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:1989156..1989782-

>mRNA_E-siliculosus-1a_M_contig7.15181.1 ID=mRNA_E-siliculosus-1a_M_contig7.15181.1|Name=mRNA_E-siliculosus-1a_M_contig7.15181.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1212bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1989156..1989782- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGGCGTTTGCGGCGACAAACAAACGCGTGTAGTCCCGGCGAGACGTTTCC
GATGCCGTCATACACGAAGCAGCAGCAGCAGCAGCATGGCGTTTGCGGCG
ACAAACAAACGCGTGTAGTCCCGGCGAGACGTTTCCGATGCCGTCATACA
CGAAGCAGCAGCAGCAGCAGCATAGCAACAACAGCAGCAGTCGTTTTCCC
CTATCCGCCACTAAACGTGCTGTTGCTCGTTCTGAGAAACGCGTGCCCTG
GCGCGCTTCGACACCAACCGGTCGCCGGGCAACAACAACAAACACCATTC
GTTCGCCACGCCTCACACTCGAACACCGGTCCGCACGCCCACCGACAGCA
AGCCTTGGGCTTGATCGAGACATTTCTAATTCTCCTCCTCTTTCCCCATC
ATACCTACCTATCCCCGGCCTCATCAGCGTACGGTCTTCGAATTCTGCAG
ACAACAGTTTTCGCTTCCGACAACACCCAAGACAGGCAACACGCCGCGCA
CAACGTGCGAAATTTCTTGGAAATTTCCCGCAGCGAGCGAGCAAGGGCGA
GACAGAGACAAGAGAGACCAGAGCACGAAAAGGGAGGAACGACTCTAAAC
ATCGATGGCATAAACCGTCCCCTTTTTCTTTCTCCCCAACAACGACGAAA
ACAAAGCACACGCGGGCACAGGCTATGCAGTCGACACTCACTTAGCAACA
ACAGCAGCAGTCGTTTTCCCCTATCCGCCACTAAACGTGCTGTTGCTCGT
TCTGAGAAACGCGTGCCCTGGCGCGCTTCGACACCAACCGGTCGCCGGGC
AACAACAACAAACACCATTCGTTCGCCACGCCTCACACTCGAACACCGGT
CCGCACGCCCACCGACAGCAAGCCTTGGGCTTGATCGAGACATTTCTAAT
TCTCCTCCTCTTTCCCCATCATACCTACCTATCCCCGGCCTCATCAGCGT
ACGGTCTTCGAATTCTGCAGACAACAGTTTTCGCTTCCGACAACACCCAA
GACAGGCAACACGCCGCGCACAACGTGCGAAATTTCTTGGAAATTTCCCG
CAGCGAGCGAGCAAGGGCGAGACAGAGACAAGAGAGACCAGAGCACGAAA
AGGGAGGAACGACTCTAAACATCGATGGCATAAACCGTCCCCTTTTTCTT
TCTCCCCAACAACGACGAAAACAAAGCACACGCGGGCACAGGCTATGCAG
TCGACACTCACT
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