mRNA_E-siliculosus-1a_M_contig7.15159.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15159.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15159.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A6H5KUD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD6_9PHAE)

HSP 1 Score: 494 bits (1272), Expect = 5.600e-168
Identity = 259/267 (97.00%), Postives = 259/267 (97.00%), Query Frame = 2 
Query:   47 MRSYCAHGTIAPLVGLLLLMASYSEAFVTPTPSQARARLMISADVSRRSHSAAFESR-PRLPAARAGRGRS-SGGLRPRMQGAPAAVALETIEDAQTAIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYTITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNFPYNQGESKVPPGFTFMDISDRYVIARGAGGGLALWLRQDTV 841
            M SYCAHGTIAPLVGLLLLMASYSEAFVTPT SQARARLMISADVSRRSHSAAFES  PRLPAARAGRGRS SGGLRPRMQGAPAA ALETIEDAQT IVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYTITNGVYLGSFPVLKFSGTFTW EETARLEFTFNEVGVLGLNFPYNQGESKVPPGFTFMDISDRYVIARGAGGGLALWLRQDTV
Sbjct:    1 MASYCAHGTIAPLVGLLLLMASYSEAFVTPTLSQARARLMISADVSRRSHSAAFESSWPRLPAARAGRGRSGSGGLRPRMQGAPAAAALETIEDAQTVIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYTITNGVYLGSFPVLKFSGTFTWAEETARLEFTFNEVGVLGLNFPYNQGESKVPPGFTFMDISDRYVIARGAGGGLALWLRQDTV 267
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A7S3XXW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXW0_HETAK)

HSP 1 Score: 142 bits (359), Expect = 5.720e-36
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 2 
Query:  461 DLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYT-ITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNFPYNQGES-KVPPGFTFMDISDRYVIARGAGGGLALWLR 829
            DL   +G W+L+FTTGD KT+K  G +I+Y P+KAVQ F+     ITNG++LG F +LKF GTFTW++E  RLEF F++V VLGL F + Q E  KVPP F F+ I ++ V+ARGAGGGLALW R
Sbjct:   19 DLERVSGCWQLVFTTGDKKTEKNFG-RINYFPVKAVQCFDAQTMGITNGIFLGDFALLKFFGTFTWIDERTRLEFDFDKVAVLGLEFGFGQKEPPKVPPAFNFIAIEEKIVVARGAGGGLALWRR 142
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A7S2UXG6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXG6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.220e-34
Identity = 83/196 (42.35%), Postives = 110/196 (56.12%), Query Frame = 2 
Query:  308 ETIEDAQTAIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNP-DYTITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGL---NFPYNQG------------------ESKVPPGFTFMDISDRYVIARGAGGGLALWLR 829
            E IE + + + +AA T+  DPD VIEA+  +EK       L+   +S+     L  NG+WRLIFTTG   TQKKLG K++Y PIKAVQ FN  D++I NGVYLG F ++KF G F W+E+  RLEF F+ + +LGL   N P                      ++   P F ++  +D    ARG GGGLALW R
Sbjct:   74 EQIESSTSMLQKAAMTKKEDPDQVIEALLNLEKLQRKLNKLDDGATSRETLQKL--NGSWRLIFTTGTADTQKKLGRKVNYFPIKAVQSFNTTDFSIENGVYLGDFSLIKFGGDFEWIEKPRRLEFDFDRISLLGLPAFNLPKGGAAEIGKSTGLGAERNVEMVKAGAKPFFNWISANDEIATARGGGGGLALWKR 267
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A7S2WPX1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPX1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.620e-31
Identity = 77/186 (41.40%), Postives = 104/186 (55.91%), Query Frame = 2 
Query:  335 IVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPD-YTITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNFPYNQG--------------------ESKVPPGFTFMDISDRYVIARGAGGGLALWLR 829
            +VRAAETR  D D V+EA+  +EK     + +   D +  +  L + NG WRL+FTTG V +QKK+GG+I+Y PIKAVQ F+     +TNG+YLG+FP+LKF G F +   + +LEF F E+ VLG      +G                    E+   P F ++    R   ARG GGGLALW R
Sbjct:   70 LVRAAETRAEDSDVVLEALLDLEKG---MRTIAREDPTAAEATLSSLNGAWRLVFTTGTVDSQKKIGGRINYFPIKAVQCFDTSTMRLTNGIYLGTFPILKFFGPFEFNLASRKLEFDFTEIAVLGFRVGLGKGGASDIGSKTGLGSENNKKLVEAGKKPFFNWISADRRIATARGGGGGLALWAR 252
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A7S4DT06_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DT06_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 2.760e-27
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 2 
Query:  344 AAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYTITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNFP-------------YNQGESKVPPGFTFMDISDRYVIARGAGGGLALWLRQD 835
            AA+ RDVDPD V  AIR +E+              + +  LL   G W+L+FTTG  KTQ+  G  I+Y P+KA+Q F     ITNG++ G  P+ +  GT+ W+   +RLEF FN+V   G+  P              +  +    P F F+ + D+ ++ARGAGGG+ALW+R+D
Sbjct:  363 AAQDRDVDPDQVYAAIRALERE-------------KLQVPLLAVKGTWKLVFTTGTAKTQRDFG-PINYFPVKAIQTFGDGDVITNGIFAGPLPLFRLKGTYKWLAFRSRLEFDFNDVEAFGVYTPELPDPLRSILGLKVDGKDYNKQPAFNFIAVDDKVLVARGAGGGVALWVRED 525
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A7S2TG87_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TG87_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 1.630e-26
Identity = 72/181 (39.78%), Postives = 97/181 (53.59%), Query Frame = 2 
Query:  341 RAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPD---YTITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNFP---------------YNQGESKVPPGFTFMDISDRYVIARGAGGGLALWLR 829
            RAA  RD+DP +V+EAI  +EKS    KP   R     K      +G+WRL+FTTGDVKTQKK+GG   YVPIKAVQ F+     Y I NGVY G  PV++F G F W+   + L++ FN V + G +                 Y   + +  P F ++ I D   +AR  G  +A+W +
Sbjct:   60 RAAAKRDIDPSSVLEAIYYLEKS----KPAAQRAIPVSKL-----SGSWRLVFTTGDVKTQKKMGGTFDYVPIKAVQTFDDSSEPYRIENGVYWGDNPVVRFRGVFRWLPNRSGLKWQFNHVQLFGKDIEVPDEWKAAVGMRPEGYQAKKYEKEPFFNWIYIDDEIAVARATG--VAIWRK 229
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A7S0EPI4_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPI4_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 2.280e-26
Identity = 73/197 (37.06%), Postives = 103/197 (52.28%), Query Frame = 2 
Query:  320 DAQTAIVRAAET-RDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYT-ITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGL---NFPYNQGES--------------KVPPG----FTFMDISDRYVIARGAGGGLALWLRQDTV 841
            D+  A+ R A T R+ DPDTV E +  +EK        +G + S+     L  +G WRL+FTTG V+ Q KLG K+ Y P++A Q F+     ITNG+Y+GSF +++F G+F W+EE  R+EF F+ + VLGL   + P    E               +   G    F ++        ARG GGGLALW R   +
Sbjct:   57 DSALALCRVAATSREADPDTVCEEMLTVEKGMRDTAKDDGGELSRSTLQSL--DGAWRLVFTTGTVEMQSKLGRKVDYFPLRATQTFDTKTNAITNGIYIGSFALVRFFGSFEWLEERRRVEFDFDRIAVLGLPAFDLPKGGAEELGAATGLGAKSNVKRAEDGKKAFFNWISADAEIATARGGGGGLALWQRDAEM 251
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A813D251_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D251_POLGL)

HSP 1 Score: 118 bits (296), Expect = 4.200e-26
Identity = 84/228 (36.84%), Postives = 122/228 (53.51%), Query Frame = 2 
Query:  215 RPRLPAARAGRGRSSGGLRPRM--QGAPAAVALETIEDAQTAIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYT-ITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNF----------------PYNQGESKVPPGFTFMDISDRYVIARGAGGGLALWLRQDTV 841
            RP +P+A      + G LR R   Q A      E ++ + + +  +A T++  P+ V EAIR++EK+       + RD       LLT  G WRLI+TTG  KT++++G +ISYVPI AVQ F+   + I NG+YLG    L+F GT  W+E T R+EF F ++ + G +                 PY     K  P F F+ + ++   ARGAGGG+ALWLR + V
Sbjct:   51 RPVMPSA----AHAGGPLRTRSVAQAALEGSGAEDLQKSLSILAESALTKNTPPEEVYEAIRVLEKA-------KDRDGDSGFEQLLT--GEWRLIYTTGTKKTEEEVG-RISYVPITAVQRFDMGKSLIRNGIYLGPLS-LEFEGTLRWIEATRRMEFDFEDLKICGSSVLLPDWLRAMAGMRSSTPY-----KKQPAFNFVAVDEKIAAARGAGGGVALWLRNELV 258
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: K0TFX7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFX7_THAOC)

HSP 1 Score: 120 bits (302), Expect = 8.790e-26
Identity = 74/201 (36.82%), Postives = 111/201 (55.22%), Query Frame = 2 
Query:  314 IEDAQTAIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTD-NGNWRLIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYT---ITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNFPYNQGESKVPP----------------------GFTFMDISDRYVIARGAGGGLALWLRQDT 838
            IE+++  ++RAA T++ +P  V+EA+  IE+   S+      D ++   D+L + +G+WRLIFTTG  + Q++ GG+I+Y   KAVQ F  D T   I NG+Y+G FP++KFSG + W E   +LEF F+++ +LGL    N G  +V                         FT++   D    ARG GGGLALW R + 
Sbjct:  187 IEESKQLLLRAATTKEENPSDVLEALESIERDCRSRFK---EDPAKFSEDILNNISGDWRLIFTTGTKEQQERRGGRINYFSPKAVQSFRADTTPKQIENGIYVGDFPLVKFSGDWEWNERVRKLEFDFDKIQLLGL-ISINLGRKEVAQIGSASGLGSKNNEKLAAEGKKAFFTWISADDNIATARGGGGGLALWKRVEN 383
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Match: A0A7S2JZY1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZY1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.120e-24
Identity = 71/198 (35.86%), Postives = 104/198 (52.53%), Query Frame = 2 
Query:  308 ETIEDAQTAIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLGGK-ISYVPIKAVQVFNPD---YTITNGVYLGSFPVLKFSGTFTWVEETARLEFTFNEVGVLGLNFPYNQGES--------------------KVPPGFTFMDISDRYVIARGAGGGLALWLR 829
            E I++A   + +AAET++ DPD+V++A+  +E     +K     D +     L    G WRLIFTTG   +QKKLGGK I+Y PIKAVQ F+P      I NG+Y+G F V+KF G F +  ++ +LEF F+++ VLG +    +G++                    K  P F ++   +    ARG     ALW R
Sbjct:   13 EPIQNALEVLYKAAETKNEDPDSVVDALESLENL--MRKKCLAEDDAAANV-LANLEGEWRLIFTTGTQDSQKKLGGKKINYFPIKAVQEFDPTADPMQIRNGIYVGDFAVIKFFGDFEFNLKSRKLEFDFDKISVLGFSIDLGKGKAAEIGAASGLGAESNVELAKKKKKPFFNWISADENIATARGGXXXXALWKR 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUD6_9PHAE5.600e-16897.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XXW0_HETAK5.720e-3656.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXG6_9STRA4.220e-3442.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WPX1_9STRA4.620e-3141.40Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4DT06_9EUKA2.760e-2737.85Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2TG87_9EUKA1.630e-2639.78Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0EPI4_9EUKA2.280e-2637.06Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A813D251_POLGL4.200e-2636.84Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
K0TFX7_THAOC8.790e-2636.82Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2JZY1_9STRA1.120e-2435.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:1779129..1786448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size798
Model size2379
Exons5
Ec32 orthologEc-15_003310.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs28KDC@1,2QSU6@2759
Seed eggNOG ortholog2880.D7FN82
Seed ortholog evalue1.7e-129
Seed ortholog score468.8
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935935.8601763-UTR-E-siliculosus-1a_M_contig7:1779128..17791741622935935.8601763-UTR-E-siliculosus-1a_M_contig7:1779128..1779174Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1779129..1779174 +
1696250854.1185427-UTR-E-siliculosus-1a_M_contig7:1779128..17791741696250854.1185427-UTR-E-siliculosus-1a_M_contig7:1779128..1779174Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1779129..1779174 +
1622935935.9520674-UTR-E-siliculosus-1a_M_contig7:1784913..17864481622935935.9520674-UTR-E-siliculosus-1a_M_contig7:1784913..1786448Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1784914..1786448 +
1696250854.183339-UTR-E-siliculosus-1a_M_contig7:1784913..17864481696250854.183339-UTR-E-siliculosus-1a_M_contig7:1784913..1786448Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1784914..1786448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935935.8773098-CDS-E-siliculosus-1a_M_contig7:1779174..17793441622935935.8773098-CDS-E-siliculosus-1a_M_contig7:1779174..1779344Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1779175..1779344 +
1696250854.131423-CDS-E-siliculosus-1a_M_contig7:1779174..17793441696250854.131423-CDS-E-siliculosus-1a_M_contig7:1779174..1779344Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1779175..1779344 +
1622935935.894299-CDS-E-siliculosus-1a_M_contig7:1780428..17806051622935935.894299-CDS-E-siliculosus-1a_M_contig7:1780428..1780605Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1780429..1780605 +
1696250854.1423728-CDS-E-siliculosus-1a_M_contig7:1780428..17806051696250854.1423728-CDS-E-siliculosus-1a_M_contig7:1780428..1780605Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1780429..1780605 +
1622935935.907097-CDS-E-siliculosus-1a_M_contig7:1781403..17815811622935935.907097-CDS-E-siliculosus-1a_M_contig7:1781403..1781581Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1781404..1781581 +
1696250854.1521142-CDS-E-siliculosus-1a_M_contig7:1781403..17815811696250854.1521142-CDS-E-siliculosus-1a_M_contig7:1781403..1781581Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1781404..1781581 +
1622935935.9235427-CDS-E-siliculosus-1a_M_contig7:1784240..17843631622935935.9235427-CDS-E-siliculosus-1a_M_contig7:1784240..1784363Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1784241..1784363 +
1696250854.1623979-CDS-E-siliculosus-1a_M_contig7:1784240..17843631696250854.1623979-CDS-E-siliculosus-1a_M_contig7:1784240..1784363Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1784241..1784363 +
1622935935.937722-CDS-E-siliculosus-1a_M_contig7:1784763..17849131622935935.937722-CDS-E-siliculosus-1a_M_contig7:1784763..1784913Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1784764..1784913 +
1696250854.172601-CDS-E-siliculosus-1a_M_contig7:1784763..17849131696250854.172601-CDS-E-siliculosus-1a_M_contig7:1784763..1784913Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1784764..1784913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15159.1prot_E-siliculosus-1a_M_contig7.15159.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 1779175..1784913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15159.1

>prot_E-siliculosus-1a_M_contig7.15159.1 ID=prot_E-siliculosus-1a_M_contig7.15159.1|Name=mRNA_E-siliculosus-1a_M_contig7.15159.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=266bp
MRSYCAHGTIAPLVGLLLLMASYSEAFVTPTPSQARARLMISADVSRRSH
SAAFESRPRLPAARAGRGRSSGGLRPRMQGAPAAVALETIEDAQTAIVRA
AETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWRLI
FTTGDVKTQKKLGGKISYVPIKAVQVFNPDYTITNGVYLGSFPVLKFSGT
FTWVEETARLEFTFNEVGVLGLNFPYNQGESKVPPGFTFMDISDRYVIAR
GAGGGLALWLRQDTV*
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mRNA from alignment at E-siliculosus-1a_M_contig7:1779129..1786448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15159.1 ID=mRNA_E-siliculosus-1a_M_contig7.15159.1|Name=mRNA_E-siliculosus-1a_M_contig7.15159.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7320bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1779129..1786448+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGATGATGATCTACACAGCAGAACATCCTCAAGCAGCAGACGAGCCATGC
GCTCCTACTGTGCCCACGGAACGATAGCGCCCCTAGTAGGGCTGCTGCTG
CTGATGGCGTCGTACTCCGAAGCGTTTGTCACCCCGACGCCGTCCCAGGC
ACGCGCGCGTCTGATGATCTCTGCCGACGTGTCCAGGCGGAGCCATTCCG
CCGCGTTCGAGAGCAGGTGAGCCTTCTATGCATATGCATGTAAGCTGTGT
GACCGTCCTAATATGGGTGTGCACCGCTGTAGATGATAAGTGTGTGGGTC
GTCGTCAACAGGCCGGAGTGCGCATCACCGGGTGATGATCCTCACGTCCA
ATTTACAACTCGGCAGACCGAGTCTTGATTTGTTGAACAACATAGGTCCC
CCTTCAACATTCCGCACGCAGTGTTGCTGCGCACAGACCAGCCTGTGTGG
TGTTGTTGGCTGAAGAGGTGTGCCCAGCGGGAATTGGGGATAGAGATAGC
ACTTATCTGGCTTTGTCGAATGTGGCAACAACGAAAGCCCTACCATGTCC
TAAATTGCCACAATTGTAGGTAATGTTGCTCTCCGGGTCAACGAGCTTTT
GCAACACAGGTCTTTGCCACGAGTGTGATGGGTTGATCATGAAGGATGCG
GGGAATTCGAGATGTTTTGGGTGTATGGCAAGCGGGGTACAGAATTAACC
TCCCGTTTCAAGGTCGCGTGAATCACGGCGAAGCGAATTCTATCGGGCCT
AAGGTCGACGGGAGTTTTGCTGCCTTCCCTGTTCTCTGCCGCGCGAAGGC
AAGCTGTATACGTCGGCCGATGAGTCAACTCGACTTAAACACGATCCACG
AGTTGCTACATAAGATTGCACACAAACAATCAACTGCGGTTCTTGGTGCG
TTTATTTTTGTCGAGTGTCCACGTTACATGTCAGATGACTACCCACACAA
GACGGGACTCAGGGGCATGTGCTGACCCCTACAGCAACCAATAGCCTCAT
TACTGCTGAGTTGTAGCTGTAATGGCTGCGTCGCTCACCCAAACATTACG
AAGTCGAGCGTCAACTTACTCACCTCCCAGGGTTCCCTCCGTTGCCTGCG
CCGGTCCCGGAAAACAACACGGAGCTATATTTTGCCACGTAAGGCTTACA
CCGCGTTAACATCCCGTACGCCGAAATTGTCGTGGTACATGAGTAAAAAC
TTTTTGAAAAGGCGAGCTCTAGGACCGGCACTCTGGCTCACACACAGCAG
CGATGGTAGCATCACAACGCAACCACGCTCTGGTGTTCGCCTCATGCTAG
GCCGCGGTTGCCGGCGGCAAGAGCGGGAAGGGGCCGCAGCAGCGGCGGCC
TGCGGCCGCGCATGCAGGGCGCACCGGCTGCGGTGGCGCTCGAGACGATC
GAAGACGCGCAGACGGCGATCGTTCGAGCGGCAGAGACGAGAGACGTCGA
TCCGGACACCGTCATCGAGGCCATCCGGTGAGCGCGTGTATAACAGTTGT
ATTCCCGGCTGGCTGAAGGGGGCTGCCGCTTGGTTTCAAAAGAGAAACCT
GATATCGTTTTTTACCTCGGAGAGGGGTGTGGGTATTCATGCACGACCGT
TACGTCTTCGACCCATAGACCCTCACGCACCAAGAGCTCAGGTCACCGTC
GAGAGCGGGGGGGTGGGGGATCCCGAGGCGGTTGTGCCCATCTAACCGGC
AGTTTTTGAAATGGAAAGGGAGCCGAAATCTCGGATGCTGGCGTTTGTTA
TCGTTCTACTGCAGCTCTTGATATGTGAGAGTTTGGGATACGAAGTCTTT
TCCCACTATGATGCGCTGTTTTCGCAATAAGAGACTTGGCGACTAGAGTA
CCCAGACCCGGCCATATAGTTGATCTAGGGGGAGGCAAGGAAGAATCGGG
TCACGGTGCGGTGGGGGCAGAAGAACCACGGCCGAAGTCTACATGCGATT
TTCCACGGCCAAAGTCAACATGCGATTGCCCTGGAACGTCTATAAACACG
TGTTTGTTTTTAACTTTGAAACAAACTGGCCAGGCGAAACAACTTCTTCA
TGGAGCGGCTATCCAATAGTAGATGTAGTTAAGGCTACATAACCACCCCA
TCCGAAATGGAAGACCTTCGAACACTGTCCAACAACAAGTCTTCGCTTTT
TTTGTCTTGCGGACGGGATTATCAAGCACTGCTCCGCCGTAAGTTTGTAG
ATTGTTGTCGGTTATTGTTCGTTTTGTTTTGCAAAAAAACACCTGCAACA
AAAAATATCATGAATGCCGGGACAGGCTTATCGAAAAGTCGGGGGGGAGC
AAGAAGCCGCTCGAGGGAAGGGACAGCTCGCAGCCCAAGTTCGACCTGCT
CACGGACAACGGGAACTGGCGCCTCATCTTCACCACCGGGGACGTGAAGA
CGCAGAAAAAACTCGGCGGAAAGATTTCGTACGTCCCGATCAAGGCAGTC
CAGGTACAGTACCTTGCTCTAGAAAAACATGCGTACAATCACAAATGATT
ATTGTACCAGTTCGAGATAATACCACAGTTTTTTTTGGCATTTTTTGTTT
CGGATGGCAATCTACGTGGCCTGATTTCGGAGACCTGGCCGGTCTTCCCT
CCGTAAGGGGTCTTTGACGTGGTCAGTACAGCGGCAGCAGTGTGTTGATG
GCAAGAATGCAATGCTACTTTTCGCTGGACATCGATCTCTTCTCTCTCAA
AGCCTCGCATTTGTCTCAGTGAACTGCATGCGAATGTGTGAAGATTCAAT
GTTGAACTCAGTGAGGGAGGAGCAGAGTGCATGTGCGATGAAGTCATTTG
GGGGCGGGGAAGTTTTTTTCTGTGCTGTCTAGGCAATTTTGAAGTTGTGC
GGCGGCGGGCCCGAGGAAAATTTTTGCAACGTTGAAATTTGCTAGTTCGC
TCCTCTATACAGTGGATCGTCCATGCTCGGGTGCTTGGGAGGCGGACAGC
TTGTTGTCAGAAGGGCAGAGAGAAACGGTTGACCCCAGGACCTTGATATG
TACTAGACGGAGTAGAGGGAGAGGGAGAGAGGGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGCCCTGT
CGGGGCTCCCGCCGCTCAATTTCCTTACCACACACACGCATCCACGTAAC
CCCCATGGTCCCTGCAGATCAGCATCGATGTCGAGGGACACCCCCAAACA
GCCCCCCTGTTAGGTATTCGATAACTTATCACCAAGTAAAACGGCAATAT
ACTCAATAACAATGCCAAACAATACCAATCCACCCAAATCTCCCATTAAG
AGATTGTTCTACGAATCTTTTGATTTCCCAAGAAAACTCTTCTCTACGAA
ATTCTGAATATTCTGATATCCGATTCTCATCGCGTCGGCATGAATTCCCT
CTAATATCCACCAACAAACAGAAAACCCTCTTGAGAAATGTTGAGAACAT
ATCTTTCACGACTGCGACCCCATCTTCTCCCTATATTTTCCCAAGCCAGA
AAAAACATCGGAGGTACTCTCGGACAATACTCGGCACAACTTAACGTACC
ATACGCAGACGTGGCAATCTATCCGAATATATTCCCGAAACAAAACCCAA
TTTCAACTTGTCGACCAATTCCAAATGACCTTCGGAAGCCCTGAACCCTC
AAGATAATCGAAAGAACGTCAATCCCTTCCTCCGTAATAGTTCGAAAATG
TGGTTACAGCAGTGGATGGAGTATTCTCTCAAAATGTCCTCGGAAACACC
AAGGAAAACCTCCACGAATACCTACATACGGGACAAGAGCGGCCTTACGG
CGGTCCGCGCGTTCCTGAGGTGCTAACCTTCAATCAAGCGGCTCTTGGCT
ACGCACGGTGGTTTGGGGAATGGTTTCAACGACGACGGGAACGAGTGGAC
CCAACGAGGACTTACCTTACGTGGGATGCTGACCAACTTGAGCATGGCGC
GGAAGTCCTCGTTGGTCCACCCGGGCCTGCCACCGTTGAAAACATGCCCC
AGCCCGCCGTGCGTAGCCAAGAGCGGTAGAGCTTTACTTCAAGCGTACCA
CGTCCGGAGCGCACGAACCACCGCCGTAGTGCCGCTCTTGTCCCGTAAGA
ACACGGCCCGACCGAAGTTGCTGCTGTGGTCGTCCAAGATCTGGAGGAGG
CAACTAGCCTGGTGCCACCCCTAGACGACGTGTACGGCCCCGCAAGGCGC
ACGAAAACATGCTCCGTGGGCCGTGATGGGTAGTAACCGCCAACGGTGGA
CGGCCTAGGGAAAAGGGATACATGATGGGGGCATTGATGGGGAGGACCAC
GATTCCACTGGTGGTGGTAGTTGTGCTGCTGGTATTGCTGGCGGGGAGGA
CGGACCCACTGCTGCTGTAACATTCCACCCAGAACCGAGTGACCCGTAAT
CCTGCTGTATCGACAAATGGGTAACGAACAAATGAGTGAAGAACAGTTTG
CCGAATTAGGCCGCATCTGCGAGCGCTGCGTACACTTTACGGCCTCGCCA
AGACGTCATCTCCAACAGCAGTTCCAGCGGCGGCCGCCGAAGCTGGTGTC
GCTTTCGGCGCCCACGATGCTTCCAACTTTTTGTTTTTTACTCTCTCGTT
AGTTTGTTTGACCTGGTGGCTGGTGTTGATGACGTCGGCGTCATAGTCGA
GGGCTGCGCCCAGGAATGGGGCCATCAGTCCTCAGCCTCCATGGCACTCT
CTACTTTTCCACCGCCGGACCTGTCGACCGTTTGAAAACTGTTGTTGTTG
AGCACCGACTTCATCGCAGGGGTCTCCTAGGCCCTTTGGGCGTTTACTTG
TCAGGCGTGAACCCGTTTACAGTGAGTTGATAAAATAGGGCAGTTCTTCC
GGTGTTCGGTGCAGCGCTATCTGCCGTCCTTGAGAAAAGGCCGTCGAAAA
GGTGCTACCTTGTACCTAGAGAATGCGGCTTCGTTCGGCAATCCATCGCC
CTAAACTTCGACTGGCGGCAGGATGTCGGTTAGTTTATACGGAGATCTGT
ATCTATTGTCTCACTGTTAACAAGAGCGCGAGTGTTGCCGACCGTGCCGA
TGTCATCTTCATGGTTGACCCGCTTCGTCTCGGCACATTCCTGTGTTCGG
ACGTTGGATCAGGTCTTCAACCCGGACTACACGATCACGAACGGCGTCTA
CCTCGGCTCCTTCCCGGTGCTCAAGTTCTCGGGCACTTTCACCTGGGTCG
AGGAGACGGCTCGCCTCGAGTTCACCTTCAATGAGGTGGGCGGGTTGGTG
ATAGGTTTTGCTCGAAATACGGTCCTGTGGAGGTTAATATATCGCATCTC
TCAAACATAGTGTTGGGGGAAAGCGCGTTGCGATGATTTTTGCGCACTAA
ATGCATGCACAAGAGGAAGGGGTGCACGTGGCTCGCCGCTGTACACGTAT
GAGGTACTCATGCTCACTGCCGTTCACGTTGGCGGCGGCGGGCGTTTCCC
TCAACGAAGCCTCGAATTTTTCCGACGAAGTGGTCAAGTTGCGGTTGGAG
GTAAAGTTCGCCGACCATCTACTACGTCACGCCACAACGCACGCAGTTTC
TTCCCTCTCCTTTCCGTCGAAGTTATCGCCTACCTTTCACCCCGCCCCCA
ACCTTGGTCTTGTGTTTCGTGATTTTTTTTGTCAGGTCGGGGTCCTCGGG
CTGAATTTCCCGTACAACCAGGGGGAGAGCAAGGTACCGCCGGGTTTCAC
CTTCATGGACATCTCGGACCGTTACGTTATCGCTCGCGGGGCCGGCGGTG
GGCTCGCCCTCTGGCTCCGGCAAGATACCGTGTAATAACCGGAGTTTCGT
TGATGGGCCAGTCCATTGCACCGCAAACGGGGCTGCTCGATTCGATGTCA
GTGTGTGGGGGGGGGCGGCGCAGTAGTGCCGCAGTGTGCCAGCCGGCACT
ACAGCAGACAAGCGGCACTACCATATACGACACAAGATAACACACCCCCT
CGAGCGATTTTCAAAGCTCAATTTCTCAACAGCAGAAAGAGTGGGGGTGC
CGAAAAGGACGGCGTTGAAACCGTCTCGCCGAGAGCTTTCCGAAAATGCA
TCGTTTCGTTTATGCATCCTCTTCGTCGTGGCGTAATCGAGCTTTGAAAA
TCGCTCGACGGGGTGTGCTATCTTGTGTTGTATACGGTATTGATCTACCA
CCGTTCTGTTCCCGGTCTTGGGGTGTTGTAGCTCGTGAGGGCTCAATCTT
GGCCGAGCTGGATGCTCTGACGGACGTGCTGGCCGGGTTGTGTTTGGTTG
TTCGCGTGGAATCAGGCGCTGATATTTCGGTAGAGTTGGCTCAACAGGGC
CTGCCGGCGAGGGAGGGGCGGGGATTCGAGCGCCGTTCGGCGAGCGAGAC
GCTTGCTTCCTGTTCGGTCGTAGATCTTTGTTATTTTCATACTTCTATAT
TTTACGACCCGGGAAGGTCGTGTACAAGAGAGGGCGAAAATGTGACATGT
AGCGAAGAATAGAGTACTCGAGTCAACTTGTCTCGTTGCGACACAATGAG
CGTTGTCAGATACACTGGGGAGCCTAAAAGTTGCTAAACCTGGGAATTGA
TGTCCCTTGCGACATTTCGGCCTTTACGCTCAGTAGAGCGTGTCCGGTAT
TGCGTGTGCAGCGGCGATTGACGTGTCACGCAAGGAATTCTCATTGCCTT
TGGCCTGTAGCGGATGCGTGAGTGGGTCGTGGGCGGTGCCCGTCGCCAAC
TGGACACAACCGGGTTTGCATTCGACCGATGGATGTGATTGCAGCCGCGG
CGGATCGTGCTTGTGAGACTGCTACAAGTGTGCCGCCGAGCAAAGTAGGG
TTCGAACACCCGGTGCAGGGCCCGGTTTCGATATGTGGGGGGCATCAAGG
CGAAGACGAGTTGGAGAATAACGTGAGATCTGTTGTTGTATTACGCGAAA
TGTTGGTCCCGGCCCGTGTGCAGTAGTTGCCATTAAGAATGCGTTTTGGG
CAGCTTCAAAGATAGATGCACGAAGCTTATTTTCGTGATAGATTCCGCCG
CATGCAAGATGTAGAAAGAACGATGCTTGGATTGCGGCAAAACGACGAAC
GAAAGACGTACTGTAGAGCACGGCACGTAGACTAACGGCAATAAAGTGCA
GTTAGGAGCAAATAGTGCTGAGGGTAGTCCTAGCCAGACTTTTTGAGCCT
GTTGTTGTTCTGCACGAATGAAGAATGGGGCGCTACACTGTTCAGAACAA
GTGCCAGCAGTGAACAAGCGACGGCCCACCCACAACAAATAGGCGGGATC
TCTTTTCAATGGCGCAAAGATATTTGGCCGGCCTTATGCCTCGCACCTGG
CACGCGTAAGAGAACATGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:1779129..1786448+

>mRNA_E-siliculosus-1a_M_contig7.15159.1 ID=mRNA_E-siliculosus-1a_M_contig7.15159.1|Name=mRNA_E-siliculosus-1a_M_contig7.15159.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1596bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1779129..1786448+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGCTCCTACTGTGCCCACGGAACGATAGCGCCCCTAGTAGGGCTGCT
GCTGCTGATGGCGTCGTACTCCGAAGCGTTTGTCACCCCGACGCCGTCCC
AGGCACGCGCGCGTCTGATGATCTCTGCCGACGTGTCCAGGCGGAGCCAT
TCCGCCGCGTTCGAGAGCAGATGCGCTCCTACTGTGCCCACGGAACGATA
GCGCCCCTAGTAGGGCTGCTGCTGCTGATGGCGTCGTACTCCGAAGCGTT
TGTCACCCCGACGCCGTCCCAGGCACGCGCGCGTCTGATGATCTCTGCCG
ACGTGTCCAGGCGGAGCCATTCCGCCGCGTTCGAGAGCAGGCCGCGGTTG
CCGGCGGCAAGAGCGGGAAGGGGCCGCAGCAGCGGCGGCCTGCGGCCGCG
CATGCAGGGCGCACCGGCTGCGGTGGCGCTCGAGACGATCGAAGACGCGC
AGACGGCGATCGTTCGAGCGGCAGAGACGAGAGACGTCGATCCGGACACC
GTCATCGAGGCCATCCGGCCGCGGTTGCCGGCGGCAAGAGCGGGAAGGGG
CCGCAGCAGCGGCGGCCTGCGGCCGCGCATGCAGGGCGCACCGGCTGCGG
TGGCGCTCGAGACGATCGAAGACGCGCAGACGGCGATCGTTCGAGCGGCA
GAGACGAGAGACGTCGATCCGGACACCGTCATCGAGGCCATCCGGCTTAT
CGAAAAGTCGGGGGGGAGCAAGAAGCCGCTCGAGGGAAGGGACAGCTCGC
AGCCCAAGTTCGACCTGCTCACGGACAACGGGAACTGGCGCCTCATCTTC
ACCACCGGGGACGTGAAGACGCAGAAAAAACTCGGCGGAAAGATTTCGTA
CGTCCCGATCAAGGCAGTCCAGGCTTATCGAAAAGTCGGGGGGGAGCAAG
AAGCCGCTCGAGGGAAGGGACAGCTCGCAGCCCAAGTTCGACCTGCTCAC
GGACAACGGGAACTGGCGCCTCATCTTCACCACCGGGGACGTGAAGACGC
AGAAAAAACTCGGCGGAAAGATTTCGTACGTCCCGATCAAGGCAGTCCAG
GTCTTCAACCCGGACTACACGATCACGAACGGCGTCTACCTCGGCTCCTT
CCCGGTGCTCAAGTTCTCGGGCACTTTCACCTGGGTCGAGGAGACGGCTC
GCCTCGAGTTCACCTTCAATGAGGTCTTCAACCCGGACTACACGATCACG
AACGGCGTCTACCTCGGCTCCTTCCCGGTGCTCAAGTTCTCGGGCACTTT
CACCTGGGTCGAGGAGACGGCTCGCCTCGAGTTCACCTTCAATGAGGTCG
GGGTCCTCGGGCTGAATTTCCCGTACAACCAGGGGGAGAGCAAGGTACCG
CCGGGTTTCACCTTCATGGACATCTCGGACCGTTACGTTATCGCTCGCGG
GGCCGGCGGTGGGCTCGCCCTCTGGCTCCGGCAAGATACCGTGTAAGTCG
GGGTCCTCGGGCTGAATTTCCCGTACAACCAGGGGGAGAGCAAGGTACCG
CCGGGTTTCACCTTCATGGACATCTCGGACCGTTACGTTATCGCTCGCGG
GGCCGGCGGTGGGCTCGCCCTCTGGCTCCGGCAAGATACCGTGTAA
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