mRNA_E-siliculosus-1a_M_contig7.15129.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15129.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15129.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:1459283..1461069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size417
Model size417
Exons2
Ec32 orthologEc-15_003740.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935929.2802198-CDS-E-siliculosus-1a_M_contig7:1459282..14594171622935929.2802198-CDS-E-siliculosus-1a_M_contig7:1459282..1459417Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1459283..1459417 +
1696250851.4587183-CDS-E-siliculosus-1a_M_contig7:1459282..14594171696250851.4587183-CDS-E-siliculosus-1a_M_contig7:1459282..1459417Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1459283..1459417 +
1622935929.302892-CDS-E-siliculosus-1a_M_contig7:1460787..14610691622935929.302892-CDS-E-siliculosus-1a_M_contig7:1460787..1461069Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1460788..1461069 +
1696250851.4671605-CDS-E-siliculosus-1a_M_contig7:1460787..14610691696250851.4671605-CDS-E-siliculosus-1a_M_contig7:1460787..1461069Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1460788..1461069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15129.1prot_E-siliculosus-1a_M_contig7.15129.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 1459283..1461069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15129.1

>prot_E-siliculosus-1a_M_contig7.15129.1 ID=prot_E-siliculosus-1a_M_contig7.15129.1|Name=mRNA_E-siliculosus-1a_M_contig7.15129.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=139bp
MSAWVNAPPPTNHLGTASASLGFQGTVIMFVAVQTTRLIDSSASKVFVGH
GASGMFALTTRFEASAGRLSTLAQGDADPPLVNVTARRAFVSGEEKYVFL
RISRVATMYVYGRDSAAATLNFVSFVPVVVSGSPPSIFR
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mRNA from alignment at E-siliculosus-1a_M_contig7:1459283..1461069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15129.1 ID=mRNA_E-siliculosus-1a_M_contig7.15129.1|Name=mRNA_E-siliculosus-1a_M_contig7.15129.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1787bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1459283..1461069+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCGCCTGGGTCAATGCGCCCCCACCGACGAACCACCTGGGCACCGC
CTCTGCTTCGCTCGGGTTTCAGGGCACGGTCATCATGTTTGTAGCTGTGC
AAACGACGAGGTTGATCGACAGCTCCGCCTCGAAGGTGAGACGAGAGCGC
CCAACTCGCCATGGTGACGAGACGGTTACTAACCACATGAGTGTAGGCAC
AACCCTTTTTGGCAGTGTTGCGGTGGCGTGCGTGTGATGAGGCTTGCTTC
ACCGATTACTGCACCGCACGTGTTCTGGCACGGGCATTGTATCGTTTGGT
GTCGTGGTCGTTCCAGGCAGGAGGTGATACTGGCCCCTCTTGTAGCACCG
AGTCTGGGGGGGGATCCAGAATGCAAGCCCTTCTCGGTGTTCGCGACAGC
CTTTTCACGTTCACCGACCTATTCTCGATCTTGACGTTCAAGAGCACATG
TCACACATCCTCTTGAGTGCTATGTTTGCACCCTTGCCTCACCGCTCTCG
GGCACACGGGGGGACTTTCACCCTAGTTTGTAAAACAGATGCTTGCTTTG
CGGTTGCTTCAGGTGCTGGGTGTTCCATCGCGATATATCTTGCCGCCAAA
GCCAGGCAGGAAGACGTAAGTTGGAACACCTCTTTTTGCGGCACCGTCGA
CGGTGAAGAAAGAGTGGCATACACATACATCCGTGCAGGGTGTGGTGTAG
TTTCGAACGATGATTACCACATGCAACAAAAAAAAACGTGGTATTGTACT
GCTGTAGTGGGCACGTTCGCATGGCCCAATCAACTGCACTGTTCACACTA
TTCTCGCCTACGCGCACGCCCTGTGGCGCTCAGCTAGCGTTTGGCATCCG
ATGGTTTCAGCACCATGCACCAATCACCTCCAAGCGTGCTCTTCCTTAGT
TGCAATTTGCCCTGTGAACACGCCGTCCTCAATGTATGTGAGTCATCGGA
GATTACCAAGGCGTTCTACACAAAGGCGAAATGGAACGTCTGGCTCCAAG
CCATGGGATTCTGCGGCACGCTAGCCTGCGCGGTGCTCATTGGTGTGCTA
AGGGTGCTGACAGCGGCCGGCCAAGGCACACCAAATATGCTTTGGTATTT
TCAGGCGAGGACGACTAGAAAAAGGATAAACACACACAGGCACGCACACA
TTGCTGATAAATGTTTGTCCTCCTGCGGAGACCTTGACTCTTCCCTCCCG
CTGACGCTGACGTGTTTTCGTCGGTAAGCCGACTGGCCCTACCAAAACGG
AATATTTGAAGCACACACACATGCGGGCGGGTCTACCGTGATATTTGCAT
TTGAAAAGCATCTAAATCACTTCCCTTCCCTGGCAAACTGCATCCATCCC
GGAACGCTCGGCAAGAGCGTTGAAAAGGCCAGCCTACGCAGTAACCGATA
TCCAGCGGCGACCAAACCGTTCATCCAATGCAGTAGCCGATATCCAGTTG
TCACTAACTCGCGCTCCCCTGTGCCTATTCACAACTACGTCGACAACTAC
GCCAGGTTTTTGTCGGCCATGGCGCGAGCGGAATGTTCGCCCTTACCACT
CGATTCGAAGCTTCTGCAGGGCGCCTCTCGACCCTGGCGCAAGGCGATGC
GGACCCGCCTTTGGTGAACGTAACTGCTCGCAGGGCCTTTGTCTCAGGTG
AAGAAAAATACGTTTTTTTGCGTATCTCGAGAGTCGCCACTATGTATGTG
TATGGGCGGGATTCGGCCGCGGCAACTCTCAATTTCGTGAGTTTTGTTCC
CGTTGTTGTTAGCGGATCCCCACCCTCGATTTTCCGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:1459283..1461069+

>mRNA_E-siliculosus-1a_M_contig7.15129.1 ID=mRNA_E-siliculosus-1a_M_contig7.15129.1|Name=mRNA_E-siliculosus-1a_M_contig7.15129.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=834bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1459283..1461069+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCGCCTGGGTCAATGCGCCCCCACCGACGAACCACCTGGGCACCGC
CTCTGCTTCGCTCGGGTTTCAGGGCACGGTCATCATGTTTGTAGCTGTGC
AAACGACGAGGTTGATCGACAGCTCCGCCTCGAAGATGTCCGCCTGGGTC
AATGCGCCCCCACCGACGAACCACCTGGGCACCGCCTCTGCTTCGCTCGG
GTTTCAGGGCACGGTCATCATGTTTGTAGCTGTGCAAACGACGAGGTTGA
TCGACAGCTCCGCCTCGAAGGTTTTTGTCGGCCATGGCGCGAGCGGAATG
TTCGCCCTTACCACTCGATTCGAAGCTTCTGCAGGGCGCCTCTCGACCCT
GGCGCAAGGCGATGCGGACCCGCCTTTGGTGAACGTAACTGCTCGCAGGG
CCTTTGTCTCAGGTGAAGAAAAATACGTTTTTTTGCGTATCTCGAGAGTC
GCCACTATGTATGTGTATGGGCGGGATTCGGCCGCGGCAACTCTCAATTT
CGTGAGTTTTGTTCCCGTTGTTGTTAGCGGATCCCCACCCTCGATTTTCC
GTGTTTTTGTCGGCCATGGCGCGAGCGGAATGTTCGCCCTTACCACTCGA
TTCGAAGCTTCTGCAGGGCGCCTCTCGACCCTGGCGCAAGGCGATGCGGA
CCCGCCTTTGGTGAACGTAACTGCTCGCAGGGCCTTTGTCTCAGGTGAAG
AAAAATACGTTTTTTTGCGTATCTCGAGAGTCGCCACTATGTATGTGTAT
GGGCGGGATTCGGCCGCGGCAACTCTCAATTTCGTGAGTTTTGTTCCCGT
TGTTGTTAGCGGATCCCCACCCTCGATTTTCCGT
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