mRNA_E-siliculosus-1a_M_contig7.15054.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig7.15054.1 vs. uniprot
Match: D7G8W0_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W0_ECTSI) HSP 1 Score: 558 bits (1438), Expect = 7.140e-195 Identity = 291/301 (96.68%), Postives = 297/301 (98.67%), Query Frame = 2
Query: 173 MTSADVFGDLTVQVLRGINLQNLKAFGTCNPYVLVKMTSSPETKTTGVRESDANPSWHETFIFRNVASTDALQISLMEKEGSREGVVSVRGGVRATDWGFPGVGGGERVLEVTMPCTTDTTGVPNMGTVVLKLQYRAQLKFRAPFGVIKTAAAKTAILTDKARIDVVVDKVMNVLFKPVAMAEGVAKRLTKAQKIIYGGSAAAVSSAVGGGVSMTLLALAVPVLLMALLFLPLTLMGGFFLAVAMLVIMPCGLALGWVVLCSRPVQCRVWMPWLFWAMCKSPLVHKALLQPPPHTPSGTQQ 1075
M SADVFGDLTVQVLRGINLQNLKAFGTCNPYVL+KMTSSPETKTTGVRESDANPSWHETFIFRNVASTDALQISLMEKEGSREGVVSVRGGVRAT+WGFPGVGGGERVLEVTMPCTTDTTGVPNMGTVVLKLQYRAQLKFRAPFGVIKTAAAKTAILTDKA+IDVVVDKVMNVLFKPVAMAEGVAKRLTKAQKIIYGGSAAAVSSAVGGG SMTLLALAVPVL MALLFLPLTLMGGFFLAVAMLVIMPC LALGWVVLCSRPVQCRVWMPWLFWAMCKSP++HKALLQPPPH+PSGTQQ
Sbjct: 1 MASADVFGDLTVQVLRGINLQNLKAFGTCNPYVLLKMTSSPETKTTGVRESDANPSWHETFIFRNVASTDALQISLMEKEGSREGVVSVRGGVRATEWGFPGVGGGERVLEVTMPCTTDTTGVPNMGTVVLKLQYRAQLKFRAPFGVIKTAAAKTAILTDKAKIDVVVDKVMNVLFKPVAMAEGVAKRLTKAQKIIYGGSAAAVSSAVGGGASMTLLALAVPVLFMALLFLPLTLMGGFFLAVAMLVIMPCVLALGWVVLCSRPVQCRVWMPWLFWAMCKSPILHKALLQPPPHSPSGTQQ 301 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig7.15054.1 >prot_E-siliculosus-1a_M_contig7.15054.1 ID=prot_E-siliculosus-1a_M_contig7.15054.1|Name=mRNA_E-siliculosus-1a_M_contig7.15054.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=302bp MTSADVFGDLTVQVLRGINLQNLKAFGTCNPYVLVKMTSSPETKTTGVREback to top mRNA from alignment at E-siliculosus-1a_M_contig7:625072..633032+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig7.15054.1 ID=mRNA_E-siliculosus-1a_M_contig7.15054.1|Name=mRNA_E-siliculosus-1a_M_contig7.15054.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7961bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:625072..633032+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:625072..633032+ >mRNA_E-siliculosus-1a_M_contig7.15054.1 ID=mRNA_E-siliculosus-1a_M_contig7.15054.1|Name=mRNA_E-siliculosus-1a_M_contig7.15054.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:625072..633032+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |