mRNA_E-siliculosus-1a_M_contig7.15008.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15008.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15008.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:20397..23434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size909
Model size1490
Exons6
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935897.1404073-UTR-E-siliculosus-1a_M_contig7:20396..209761622935897.1404073-UTR-E-siliculosus-1a_M_contig7:20396..20976Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 20397..20976 +
1696250838.4154363-UTR-E-siliculosus-1a_M_contig7:20396..209761696250838.4154363-UTR-E-siliculosus-1a_M_contig7:20396..20976Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 20397..20976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935897.1583683-CDS-E-siliculosus-1a_M_contig7:20976..210001622935897.1583683-CDS-E-siliculosus-1a_M_contig7:20976..21000Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 20977..21000 +
1696250838.4261477-CDS-E-siliculosus-1a_M_contig7:20976..210001696250838.4261477-CDS-E-siliculosus-1a_M_contig7:20976..21000Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 20977..21000 +
1622935897.177602-CDS-E-siliculosus-1a_M_contig7:21209..213141622935897.177602-CDS-E-siliculosus-1a_M_contig7:21209..21314Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 21210..21314 +
1696250838.4383876-CDS-E-siliculosus-1a_M_contig7:21209..213141696250838.4383876-CDS-E-siliculosus-1a_M_contig7:21209..21314Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 21210..21314 +
1622935897.1969435-CDS-E-siliculosus-1a_M_contig7:21781..220701622935897.1969435-CDS-E-siliculosus-1a_M_contig7:21781..22070Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 21782..22070 +
1696250838.448211-CDS-E-siliculosus-1a_M_contig7:21781..220701696250838.448211-CDS-E-siliculosus-1a_M_contig7:21781..22070Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 21782..22070 +
1622935897.2157938-CDS-E-siliculosus-1a_M_contig7:22531..225671622935897.2157938-CDS-E-siliculosus-1a_M_contig7:22531..22567Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 22532..22567 +
1696250838.4575975-CDS-E-siliculosus-1a_M_contig7:22531..225671696250838.4575975-CDS-E-siliculosus-1a_M_contig7:22531..22567Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 22532..22567 +
1622935897.2412102-CDS-E-siliculosus-1a_M_contig7:22806..229101622935897.2412102-CDS-E-siliculosus-1a_M_contig7:22806..22910Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 22807..22910 +
1696250838.4748464-CDS-E-siliculosus-1a_M_contig7:22806..229101696250838.4748464-CDS-E-siliculosus-1a_M_contig7:22806..22910Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 22807..22910 +
1622935897.2614143-CDS-E-siliculosus-1a_M_contig7:23083..234341622935897.2614143-CDS-E-siliculosus-1a_M_contig7:23083..23434Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 23084..23434 +
1696250838.4857368-CDS-E-siliculosus-1a_M_contig7:23083..234341696250838.4857368-CDS-E-siliculosus-1a_M_contig7:23083..23434Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 23084..23434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15008.1prot_E-siliculosus-1a_M_contig7.15008.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 20977..23434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15008.1

>prot_E-siliculosus-1a_M_contig7.15008.1 ID=prot_E-siliculosus-1a_M_contig7.15008.1|Name=mRNA_E-siliculosus-1a_M_contig7.15008.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=303bp
MLKMPDSASRHKTKLYGTSGDTTQLLDAIVKKRKKLVPPDEREDFDSDVE
SLRSKVAELAKHEQDVRSSVEELVERWDGQKKQASRDACVHRKRLKMSPP
TAASASAPADAAGDAGGSSGTVRAGAVSNAPAVAMDWGKDDEDDHAMAFV
QNYGKAWSHMKASVTEEGVPTPDIRVSNDASFLGRKGSIDKAIWSEVQAQ
KKTDTGVGLYIVYFPGTTTEYGLPQVLVRINEQAVSIVKEVDCVATTTQC
GKTLSVLVSFCEQGGDFLAVDRNVCTLTIPGEKKREGDGAKEERESEGDG
KQG
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mRNA from alignment at E-siliculosus-1a_M_contig7:20397..23434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15008.1 ID=mRNA_E-siliculosus-1a_M_contig7.15008.1|Name=mRNA_E-siliculosus-1a_M_contig7.15008.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3038bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:20397..23434+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCAGCGCGAAGGGTAGGAAGGAGACTATGTATGCTCATCGCCACGTTGG
TCTGTCTTAAAATGCGAGTCCGTTCAAGCCCATGGTGTCTCATGGAGATC
ACTCTTGCAGAACGTTTGCTGATTCCCGATTTTTGCTGTAGCTTTCTGAC
CGTAGTGTGTGTTCGCTTTCTGAAGCTGATCGATTTACCCCTATTGCTGC
GGTAGCTTTCTAAACAGAGGGTGGGTGTGTTTGCGGTTGCTTTCGGGTGG
CTAACCAACAATGCCTCCATCGCGGTCCGCGAGTGTGGGTGCGTTTGCAG
TTGCTTTCTGACGCTGATCGATTTGCCCCTGTTGCTGTGGTAGCTTTCTA
AACAGAGTGCAGGTGCGGTCCTCATCGCGGTCCGTGAGTGTGTGTTCGTT
TGCAGTTGCTTTGTTTTTTCCCAGACACCGAGCTCTCGAATCTCTCTGTT
GTCGTAAATAAATCATTCATGACGCCTTGCAAGTGACGGAACGCGGTAAC
TTGGATCGAATGAACCGTTTACCACGTAGGCTCAATACCAATACCGGAAC
AGTTGGTGCACGAGCGACGGTTACACGAGGATGCTGAAGATGCCGGACTC
TGCTGTGAGATATGTTGCTGTAGGTGACCCGACCTGGGCATCAAAACCAC
TTGTTTGCCCATGCCTCTAATAGCGATCGGCGCGTTGAACAAGTATTTTA
GCTGAATGATGTCCGTATTTTGCGATGCTGATCTTGTTGCAAAAAACGAA
AAACATCCCCAACTACGAGTCTAAACTGTGACTATTTTTCCCCGTGTGGT
GCACTCATCGCAGTCACGTCACAAAACGAAACTCTATGGGACATCGGGCG
ACACGACGCAGTTGCTGGACGCAATTGTGAAAAAGAGAAAAAAACTCGTA
CCTCCAGATGAACGAGAGGTGCGTAACACTCACACGCCGACGAGGGTTCG
GTGGGTTGGAATACCAATGATAATATTAATAGAACAAATTCACACAGGGC
CTCGCATACGCTCTTTCAAGTAGCTTAAGCATGAATTTGCATCCAACGTA
AGATTGAAGCTCTCCCGAGGCTTTAGAAGCAGAGGGGATGAGAATTTCTT
GCGATATCCAACCCGTTTCCAAATGTGCCTCGATATAATAGGCTGTGTGG
CGAGGGTTGCCTATGTTTGGACTAAAAGCTGTATGCGGTTATGCAGTGGA
CAGACAAATAAGTCACTAAGCGCTTTTTTTCGCCAGTGAAGACGACGTTG
AGAATCGAACCCCAGACCCTGAGGTTAGGTAGTTGACGCTGCTAACCACT
GAGCCATAAGGATGGACTCGCTTTGATTTCTTGTGAAAAGAAAGGTATCG
TAAACGTCGTTTTATCTTTGCTTTGATGTTCACAGGATTTTGACAGCGAT
GTGGAATCGCTCCGGTCAAAGGTCGCGGAGTTGGCTAAACATGAACAAGA
CGTAAGGAGCTCTGTGGAGGAATTGGTCGAAAGATGGGATGGACAAAAAA
AACAAGCCTCGCGCGACGCTTGCGTACACCGGAAACGGTTGAAAATGTCG
CCTCCAACGGCTGCGTCGGCTTCAGCACCAGCTGACGCAGCAGGTGACGC
GGGGGGTTCAAGCGGAACGGTACGAGCAGGAGCTGTTTCCAATGCTCCGG
CTGTGGCAATGGACTGGGGAAAAGGTGAAACGGTGTTGGTAAAAGTCATA
GTTGTATTACGGAGGACGACGCCTACAATACGCAGTGGTAAACTGTTGTA
CACGCCGATCACCTTTTGTGTCTGTGAGAGATTATGCAGTAAACAGACAA
ATAAGTCTGGGAGCGCTTTTTTCGCCAGGAAAGACGACGTTGAGGTTAGG
AAGTTGGTGCTGCTTTCACATATTGAGTTTAAAAGAGATAGATAGGGTTT
GAGACTTGTGGGCGGAGAGGGTCGACCAGTCAGCCACATGATTGCATTGG
TGAACATTGCACGAAGTGGTGAATTTTGGTTCACAAGCCTTTGCATGTTT
GAATACGTTACACGGGGATTTCTGACTGTACCAAACACGAGATGAAAATC
CCCTGTACACAAACGTGTCAGTTTATAATCCTTGGCAATTTTCTCCTCCA
TTGCTACTGTACCCTGTCGCGCATTCCGATAACAGATGATGAAGACGATC
ATGCCATGGCCTTCGTCCAAAGTAAGTCTAATACTGTATATTTTAGTACC
GCTTGGTCAAACAAGCCTGTTTTATCCATCAGCTAGTTTTGCACGGAGAA
TAAGCCATCGCGCGGAATTCTTCTGGGGGATGGCGGGTTGAAACACGGTA
CAGTATCACGAGTTTTTTGCTACAGACACATTTGAAAAATTCAGATAACG
CATTAAACTCACACGTGTTTATTTCGGTCCGTTGCATTTCTGCGCGAATT
CGTCCACAAGACTATGGCAAGGCTTGGTCCCACATGAAGGCCTCGGTGAC
AGAGGAAGGGGTGCCCACGCCCGACATCCGAGTCTCGAACGATGCGTCGT
TCCTCGGAAGAAAGGTACATATGACAGGTCACCGGTTTCTCCACGTGTTA
TGCACATCTACTTTCGTATTCGCATTGACACCCCAAGACTCGACCGTTGC
TTAATTTTCGAAATATCTGAGGCTGACTTCGTTGCAAATCCGTAGCTCAT
GAACAGTCCTTTTTTGTATGTGCTCGAAACATCACAGGGCTCCATTGACA
AGGCAATCTGGAGCGAAGTCCAGGCACAGAAGAAGACGGACACGGGTGTT
GGGTTGTACATCGTTTATTTCCCGGGCACAACAACCGAGTACGGGCTCCC
CCAAGTGTTGGTCAGGATCAACGAACAGGCCGTCAGCATCGTGAAGGAAG
TCGACTGCGTCGCCACCACAACTCAATGTGGAAAGACGCTCAGCGTCCTG
GTGTCGTTTTGCGAACAAGGTGGAGACTTCTTGGCAGTTGATAGGAATGT
CTGTACGTTGACGATTCCAGGGGAAAAGAAACGAGAGGGCGATGGAGCAA
AAGAGGAGAGAGAAAGTGAGGGAGACGGGAAGCAGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:20397..23434+

>mRNA_E-siliculosus-1a_M_contig7.15008.1 ID=mRNA_E-siliculosus-1a_M_contig7.15008.1|Name=mRNA_E-siliculosus-1a_M_contig7.15008.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1818bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:20397..23434+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGAAGATGCCGGACTCTGCTATGCTGAAGATGCCGGACTCTGCTTC
ACGTCACAAAACGAAACTCTATGGGACATCGGGCGACACGACGCAGTTGC
TGGACGCAATTGTGAAAAAGAGAAAAAAACTCGTACCTCCAGATGAACGA
GAGTCACGTCACAAAACGAAACTCTATGGGACATCGGGCGACACGACGCA
GTTGCTGGACGCAATTGTGAAAAAGAGAAAAAAACTCGTACCTCCAGATG
AACGAGAGGATTTTGACAGCGATGTGGAATCGCTCCGGTCAAAGGTCGCG
GAGTTGGCTAAACATGAACAAGACGTAAGGAGCTCTGTGGAGGAATTGGT
CGAAAGATGGGATGGACAAAAAAAACAAGCCTCGCGCGACGCTTGCGTAC
ACCGGAAACGGTTGAAAATGTCGCCTCCAACGGCTGCGTCGGCTTCAGCA
CCAGCTGACGCAGCAGGTGACGCGGGGGGTTCAAGCGGAACGGTACGAGC
AGGAGCTGTTTCCAATGCTCCGGCTGTGGCAATGGACTGGGGAAAAGGAT
TTTGACAGCGATGTGGAATCGCTCCGGTCAAAGGTCGCGGAGTTGGCTAA
ACATGAACAAGACGTAAGGAGCTCTGTGGAGGAATTGGTCGAAAGATGGG
ATGGACAAAAAAAACAAGCCTCGCGCGACGCTTGCGTACACCGGAAACGG
TTGAAAATGTCGCCTCCAACGGCTGCGTCGGCTTCAGCACCAGCTGACGC
AGCAGGTGACGCGGGGGGTTCAAGCGGAACGGTACGAGCAGGAGCTGTTT
CCAATGCTCCGGCTGTGGCAATGGACTGGGGAAAAGATGATGAAGACGAT
CATGCCATGGCCTTCGTCCAAAATGATGAAGACGATCATGCCATGGCCTT
CGTCCAAAACTATGGCAAGGCTTGGTCCCACATGAAGGCCTCGGTGACAG
AGGAAGGGGTGCCCACGCCCGACATCCGAGTCTCGAACGATGCGTCGTTC
CTCGGAAGAAAGACTATGGCAAGGCTTGGTCCCACATGAAGGCCTCGGTG
ACAGAGGAAGGGGTGCCCACGCCCGACATCCGAGTCTCGAACGATGCGTC
GTTCCTCGGAAGAAAGGGCTCCATTGACAAGGCAATCTGGAGCGAAGTCC
AGGCACAGAAGAAGACGGACACGGGTGTTGGGTTGTACATCGTTTATTTC
CCGGGCACAACAACCGAGTACGGGCTCCCCCAAGTGTTGGTCAGGATCAA
CGAACAGGCCGTCAGCATCGTGAAGGAAGTCGACTGCGTCGCCACCACAA
CTCAATGTGGAAAGACGCTCAGCGTCCTGGTGTCGTTTTGCGAACAAGGT
GGAGACTTCTTGGCAGTTGATAGGAATGTCTGTACGTTGACGATTCCAGG
GGAAAAGAAACGAGAGGGCGATGGAGCAAAAGAGGAGAGAGAAAGTGAGG
GAGACGGGAAGCAGGGGGGCTCCATTGACAAGGCAATCTGGAGCGAAGTC
CAGGCACAGAAGAAGACGGACACGGGTGTTGGGTTGTACATCGTTTATTT
CCCGGGCACAACAACCGAGTACGGGCTCCCCCAAGTGTTGGTCAGGATCA
ACGAACAGGCCGTCAGCATCGTGAAGGAAGTCGACTGCGTCGCCACCACA
ACTCAATGTGGAAAGACGCTCAGCGTCCTGGTGTCGTTTTGCGAACAAGG
TGGAGACTTCTTGGCAGTTGATAGGAATGTCTGTACGTTGACGATTCCAG
GGGAAAAGAAACGAGAGGGCGATGGAGCAAAAGAGGAGAGAGAAAGTGAG
GGAGACGGGAAGCAGGGG
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