mRNA_E-siliculosus-1a_M_contig7.15002.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15002.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15002.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: D8LK09_ECTSI (OrfB_Zn_ribbon domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK09_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.630e-45
Identity = 83/168 (49.40%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  806 KKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNKRMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVRCASEHHSAETSVLGKRK 1309
            K   I K ++D+   KKK  L +A YR  ARAK L  D H+KTIK L+D YDVI++GKI VQ LMS   Q+ +NK  F +LSH+ FRQRL  K  +    VV QDESYT+Q C +CG LKKD+G A+ Y C  C L + RD++   NI++RCASE H   T   G+++
Sbjct:    7 KSYGILKAIKDSKDDKKKNNLGRACYRVNARAKDLVTDFHFKTIKFLMDNYDVIILGKINVQQLMSMKSQNKTNKDHFRFLSHFLFRQRLLMKTSITPHAVVIQDESYTTQTCVKCGVLKKDVGDAEVYKCSRCNLCMGRDISGASNILLRCASETHQEATRTSGRKR 174          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A2G4EXR4_9CYAN (Transposase n=2 Tax=Tychonema bourrellyi TaxID=54313 RepID=A0A2G4EXR4_9CYAN)

HSP 1 Score: 114 bits (285), Expect = 1.420e-24
Identity = 106/378 (28.04%), Postives = 183/378 (48.41%), Query Frame = 2
Query:  158 EQEKVLRKWMNSARQTYNEALRLVKAKKAKAN-LLLKSATRDLVKN------FKSARAAYTARLRKVKFGKARIKKRRKSGQFKGRRRYKKRKPFELKFKSRRLTSDSIELEKKSISFEDNTVCFFGSTKKHKLRVDMSEAFSDEPGAHKPSQSCRLAYCFGRWYIIVPEKVQIKKERADASVEPRIIGIDPGLRTAFTCSS--NFGDVLEVGIDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK--RMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            EQ+ ++++W   +R  YN  ++ ++ + AKAN + +K+   + +        F+    A       VK  K   KK    GQ +           + KF+SR+ T  SI + K ++    N   +     K +L   +   FSD           RL   +G +Y+IV E+VQ  K       + R++ +DPG+RT  T  S  ++G    +G D+    Q+   +   +  K+  A   ++K + +KA  R + + K+L+ +LH K  K L+D +DVI++       ++SK+ +   NK  R    LSHY F+  LK+KA   +++V++ +E+YTS+     G + K+LG A+T      GL +DRD+N    I +R
Sbjct:    8 EQKALIKQWFGVSRFVYNTTIKYLQERGAKANWMTIKTGILNSLPEWAKPVPFQIKSIAIKDACSAVKAAKQGFKK---DGQLR-----------QCKFRSRKDTKQSIYVPKSAVK---NCGVYHSILGKCQLTESLPTNFSDG----------RLTLTYGEYYLIVSEEVQPTK----TDKQGRVVALDPGVRTFMTFFSEDSYG---WLGNDSNLYIQKLCFRLDKLVSKISKAPS-RQKRRFKKAASRLRCKIKNLSRELHHKVAKFLVDNFDVILLPTFETSQMVSKSRRKLRNKTVRQMLTLSHYEFKNFLKWKAWENSQLVIDCNEAYTSKTVSWTGEIVKNLGGARTIKSAATGLKMDRDLNGARGIFLR 350          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A7Z9BN03_9CYAN (Transposase n=7 Tax=Microcoleaceae TaxID=1892252 RepID=A0A7Z9BN03_9CYAN)

HSP 1 Score: 110 bits (274), Expect = 2.400e-23
Identity = 85/283 (30.04%), Postives = 143/283 (50.53%), Query Frame = 2
Query:  422 ELKFKSRRLTSDSIELEKKSISFEDNTVCFFGSTKKHKLRVDMSEAFSDEPGAHKPSQSCRLAYCFGRWYIIVPEKVQIKKERADASVEPRIIGIDPGLRT--AFTCSSNFGDVLEVGIDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK--RMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            + KF+SR+    SI + K +I          G  K  +L  D    FSD           RL   +G +Y+ +  KVQ    + ++  + R++ +DPG+RT   F   ++FG    +G D+  + Q+   +   +  ++  A C K+K  L+KA  R + + ++   +LH KT + L++ +DVI++       ++SK+ +   NK  R    LSHY F+Q LK+KA   +KVV++ +E+YTS+     G +  +LG AKT       L +DRD+N    I +R
Sbjct:   49 QCKFRSRKDVKQSIYIPKSAIKDCGIYHSILGGCKFKELLPDN---FSDG----------RLTLIYGEYYLTISTKVQ----QLNSENQGRVVALDPGVRTFMTFFSETSFG---WLGQDSNLQIQKLCFQLDKLVSQLSKAKC-KQKRNLKKAASRLRCKIQNFVKELHHKTARFLVENFDVILLPTFETSQMVSKSRRKLRNKSVRQMLTLSHYEFKQFLKWKAWENHKVVIDCNEAYTSKTVSWTGEIINNLGGAKTIKSNSTQLKMDRDLNGARGIFLR 310          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A0M1JJY8_9CYAN (Transposase (Fragment) n=5 Tax=Microcoleaceae TaxID=1892252 RepID=A0A0M1JJY8_9CYAN)

HSP 1 Score: 108 bits (269), Expect = 8.350e-23
Identity = 80/281 (28.47%), Postives = 142/281 (50.53%), Query Frame = 2
Query:  422 ELKFKSRRLTSDSIELEKKSISFEDNTVCFFGSTKKHKLRVDMSEAFSDEPGAHKPSQSCRLAYCFGRWYIIVPEKVQIKKERADASVEPRIIGIDPGLRT--AFTCSSNFGDVLEVGIDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK-RMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMV 1255
            + KF+SR+    SI + K +I    +   +     K K +  + E FSD           RL   +G +Y+ +  ++Q    + ++  + R++ + PG+RT   F   ++FG    +G D+    Q+   K   +  ++  A C K+K  L+KA  R   + K+L  +LH+KT + L++ +DVI +       ++SK+ +  +   R+   LSHY F+Q LK+KA   +K+V++ +E+YTS+     G +  +LG AKT       L +DRD+N    I +
Sbjct:   49 QCKFRSRKDVKQSIYIPKSAIK---DCGIYHSILGKGKFKESLPENFSDG----------RLTLTYGEYYLTISTELQ----QLNSENQGRVVALAPGVRTFMTFFSETSFG---WLGKDSNLHIQKLCFKLDKLVSRLSKAKC-KQKRNLKKAASRLGCKIKNLVKELHYKTARFLVENFDVIFLPTFETSQMVSKSRRKRNKSVRLMLTLSHYEFKQFLKWKAWENHKIVIDCNEAYTSKTVSWTGEIINNLGGAKTIKSNSTQLKMDRDLNGARGIFL 308          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A4V0XV77_PLAAG (Transposase n=1 Tax=Planktothrix agardhii CCAP 1459/11A TaxID=282420 RepID=A0A4V0XV77_PLAAG)

HSP 1 Score: 102 bits (254), Expect = 1.580e-21
Identity = 66/202 (32.67%), Postives = 112/202 (55.45%), Query Frame = 2
Query:  665 ERADASVEPRIIGIDPGLRT--AFTCSSNFGDVLEVGIDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK--RMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            ++ ++  + R++ +DPG+RT   F   ++FG    +G D+    Q+   K   +  ++  A C +KK  L+KA  R + + K+L  +LH KT K L++ +DVI++       ++SK+ +   NK  R    LSHY F+Q LK+K+   +KVV++ +E+YTS+     G +  +LG AKT       L +DRD+N    I +R
Sbjct:    2 QQLNSENQGRVVALDPGVRTFMTFFSETSFG---WLGKDSNLHIQKLCFKLDKLVSQLSKAKCKQKKN-LKKAASRLRCKIKNLVKELHHKTAKFLVENFDVILLPTFETSQMVSKSRRKLRNKSVRQMLTLSHYEFKQFLKWKSWENHKVVIDCNEAYTSKTVSWTGEIINNLGGAKTIKSNSTQLKMDRDLNGARGIFLR 199          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: UPI0011DFF219 (RNA-guided endonuclease TnpB family protein n=1 Tax=Scytonema hofmannii TaxID=34078 RepID=UPI0011DFF219)

HSP 1 Score: 103 bits (256), Expect = 1.660e-20
Identity = 71/225 (31.56%), Postives = 119/225 (52.89%), Query Frame = 2
Query:  599 CRLAYCFGRWYIIVP-EKVQIKKERADASVEPRIIGIDPGLRTAFT--CSSNFGDVLEVGIDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK--RMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            CRL   +G +Y+ +P E  Q++ E      + R++ +DPG+RT FT    S+FG    +G +   + Q+   K   +   +   T  + K +L+KA  R + + K+L  +L  K+I+ L+D +D+I++       +  K  +   +K  R    LSHY F+Q +K+KA   NKVV++ +E+YTS+     G + K+LG AK       G  +DRD+N    I +R
Sbjct:  160 CRLVLAYGDYYLTIPVESPQLETEN-----QGRVVALDPGIRTFFTFLSESSFG---WLGKNANVKIQKLCFKLDELCSGI-SKTRGQLKRRLKKAANRLRGKIKNLVDELQKKSIRFLVDNFDIILLPTFETSQMSKKARRRIRSKSVRQMLTLSHYKFKQFIKHKAFEHNKVVLDVNEAYTSKTVSWSGEIVKNLGGAKIIKSSSTGQTMDRDLNGARGIFLR 375          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A139X085_9CYAN (Transposase n=1 Tax=Scytonema hofmannii PCC 7110 TaxID=128403 RepID=A0A139X085_9CYAN)

HSP 1 Score: 103 bits (256), Expect = 4.710e-20
Identity = 71/225 (31.56%), Postives = 119/225 (52.89%), Query Frame = 2
Query:  599 CRLAYCFGRWYIIVP-EKVQIKKERADASVEPRIIGIDPGLRTAFT--CSSNFGDVLEVGIDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK--RMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            CRL   +G +Y+ +P E  Q++ E      + R++ +DPG+RT FT    S+FG    +G +   + Q+   K   +   +   T  + K +L+KA  R + + K+L  +L  K+I+ L+D +D+I++       +  K  +   +K  R    LSHY F+Q +K+KA   NKVV++ +E+YTS+     G + K+LG AK       G  +DRD+N    I +R
Sbjct:  298 CRLVLAYGDYYLTIPVESPQLETEN-----QGRVVALDPGIRTFFTFLSESSFG---WLGKNANVKIQKLCFKLDELCSGI-SKTRGQLKRRLKKAANRLRGKIKNLVDELQKKSIRFLVDNFDIILLPTFETSQMSKKARRRIRSKSVRQMLTLSHYKFKQFIKHKAFEHNKVVLDVNEAYTSKTVSWSGEIVKNLGGAKIIKSSSTGQTMDRDLNGARGIFLR 513          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A1D1Y5P0_9ARAE (Putative transposase R104 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y5P0_9ARAE)

HSP 1 Score: 100 bits (250), Expect = 3.270e-19
Identity = 82/293 (27.99%), Postives = 131/293 (44.71%), Query Frame = 2
Query:  410 RKPFELKFKSRRLTSDSIELEKKSISFEDNTVCFFGSTKKHKLRVDMSEAFSDEPGAHKPSQSCRLAYC-FGRWYIIVPEKVQIKKERADASVEPR---IIGIDPGLRTAFTCSSNFGDVLEVG---IDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK--RMFSYLSHYSFRQRLKYKAGLLNKV-VVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            RK F +KF+S++    SI +  K          F      HK++       S EP   K     RL     G +Y+ +P  ++I+ E            +I +DPG+RT  T     G  +E G   I   YR    + K  S   ++      +K+ +LR+   R   +   L  D H+K  K L + Y +I++ +   Q ++ +  +   +K  R     SHY FRQ L +K+       VV   E YTS+ C  CG++ K LG +K + C +C   +DRD+N   NI+++
Sbjct:  287 RKKFNMKFRSKKDPQQSIAILSKHWGKSRGEYSFL-----HKIK-------SSEPLPEKLEYDSRLVLNRLGEYYLCIPRPLEIRAENQGPIFRKEGSGVISLDPGVRTFMTGYDPSGTAVEWGKNDIGRVYRLCHAYDKLQSKRDQIHGKKNKRKRYRLRRVMLRIYKKIHCLVNDCHYKLAKWLCENYRIILLPEFRTQGMVRRGQRRIGSKTARAMCSWSHYRFRQHLVHKSREYPWCQVVICTEEYTSKTCGFCGYIHKKLGGSKEFCCPKCKTNLDRDINGARNILLK 567          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A397GM53_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GM53_9GLOM)

HSP 1 Score: 99.8 bits (247), Expect = 8.030e-19
Identity = 79/291 (27.15%), Postives = 131/291 (45.02%), Query Frame = 2
Query:  407 KRKPFELKFKSRRLTSDSIELEKKSISFEDNTVCFFGSTKKHKLRVDMSEAFSDEPGAHKPSQSCRLAYCFGRWYIIVPEKVQIKKERADASVEPRIIGIDPGLRTAFTCSSNFGDVLEVG---IDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNK--RMFSYLSHYSFRQRLKYKAGLLN--KVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            KRK F++KF+S++    SI +  K          F         ++  +E    E   +      RL    G +Y+ +P+ ++I  +    +    +I +DPG+RT  T     G  +E G   I   YR    + K  S    +      +K+ KL +   R   + + L  D H K  K L   Y +I++ K   Q ++ +  +   +K  RM    SH+ FRQ L +K       +V++  +E YTS+ C  CGH+ + LG +K + C  C   +DRD+N   NI++R
Sbjct:  291 KRKKFKMKFRSKKDQQQSIAILSKHWGKSKGVYTFL-------CKMKSAENLPAELHYYSRLMMNRL----GEFYLCIPQPLEIWAKNQGPTQSDAVIALDPGVRTFITGYDPSGQAVEWGKNDISRIYRLSHIYDKIQSTHNSIHGKVHKQKRYKLCRVMLRIHKKIRCLINDCHHKLAKWLCQSYRIILLPKFQTQGMVRRGKRRIRSKTARMMLTWSHFRFRQYLLHKVREYPWCRVIICTEE-YTSKTCGCCGHIHRKLGGSKVFRCPSCTAELDRDINGARNILLR 569          
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Match: A0A0W8DZT6_PHYNI (Transposase IS605 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DZT6_PHYNI)

HSP 1 Score: 94.0 bits (232), Expect = 2.260e-17
Identity = 78/281 (27.76%), Postives = 127/281 (45.20%), Query Frame = 2
Query:  422 ELKFKSRRLTSDSIELEKKSISFEDNTVCFFGSTKKHKLRVDMSEAFSDEPGAHKPSQSCRLAYCFG-RWYIIVPEKVQIKKERADASVEPRIIGIDPGLRTAFTCSSNFGDVLEVGIDTRYRFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKTIKHLLDRYDVIVVGKIGVQSLMSKTGQ-STSNKRMFSYLSHYSFRQRLKYKAGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVNSGYNIMVR 1258
            EL+FKS++  S SIE   + I   +  V F    K        +E F  +        S RL      ++Y+ +P +V++ K+    +   R   IDPG+R+  T     G  L V     Y F+R       I+++ R+ T  +K+ ++ K   +   R K + AD+H K    L   Y  +++       + S+  + S+   R     SHY F+  L YK       ++E +E YT++ C  CG +   +   K + C  C LVIDRDVN+  NI ++
Sbjct:   89 ELRFKSKKDNSSSIEFRNRGIKSANGLVQF----KPRYFGFSKNEGFLIKEKMPDLQFSVRLLRTRDEKFYLCIP-RVKVFKQ----TTSTRTCAIDPGVRSFITMYDQDGLTLGVDDANEYIFRRCLTIDRLISRRTRE-TNKRKRYRMGKRLTKMFNRVKAMIADMHHKVSSWLSKNYKQVLLPSFQTSDMTSRQKRISSKTSRAILTWSHYKFKMMLAYKMERSGGRMIECEEHYTTKTCSCCGRINYGITSQKVFDCNHCNLVIDRDVNAARNIFLK 359          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK09_ECTSI1.630e-4549.40OrfB_Zn_ribbon domain-containing protein n=1 Tax=E... [more]
A0A2G4EXR4_9CYAN1.420e-2428.04Transposase n=2 Tax=Tychonema bourrellyi TaxID=543... [more]
A0A7Z9BN03_9CYAN2.400e-2330.04Transposase n=7 Tax=Microcoleaceae TaxID=1892252 R... [more]
A0A0M1JJY8_9CYAN8.350e-2328.47Transposase (Fragment) n=5 Tax=Microcoleaceae TaxI... [more]
A0A4V0XV77_PLAAG1.580e-2132.67Transposase n=1 Tax=Planktothrix agardhii CCAP 145... [more]
UPI0011DFF2191.660e-2031.56RNA-guided endonuclease TnpB family protein n=1 Ta... [more]
A0A139X085_9CYAN4.710e-2031.56Transposase n=1 Tax=Scytonema hofmannii PCC 7110 T... [more]
A0A1D1Y5P0_9ARAE3.270e-1927.99Putative transposase R104 n=1 Tax=Anthurium amnico... [more]
A0A397GM53_9GLOM8.030e-1927.15Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A0W8DZT6_PHYNI2.260e-1727.76Transposase IS605 n=1 Tax=Phytophthora nicotianae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:9981..11376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1131
Model size1315
Exons2
Ec32 orthologEc-06_007715.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelSaccharomycetaceae
COG Functional cat.L
EggNOG OGs2S61S@2759,3A84T@33154,3P6H3@4751,3R2Z2@4890,3RW77@4891,3S28D@4893,COG0675@1
EggNOG free text desc.Probable transposase
Seed eggNOG ortholog4950.XP_003678658.1
Seed ortholog evalue1.2e-24
Seed ortholog score120.9
Taxonomic scopeFungi
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15002.1prot_E-siliculosus-1a_M_contig7.15002.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 10165..11376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935902.0654125-UTR-E-siliculosus-1a_M_contig7:9980..101641622935902.0654125-UTR-E-siliculosus-1a_M_contig7:9980..10164Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 9981..10164 +
1696250839.8699355-UTR-E-siliculosus-1a_M_contig7:9980..101641696250839.8699355-UTR-E-siliculosus-1a_M_contig7:9980..10164Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 9981..10164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935902.0866942-CDS-E-siliculosus-1a_M_contig7:10164..102411622935902.0866942-CDS-E-siliculosus-1a_M_contig7:10164..10241Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 10165..10241 +
1696250839.8814957-CDS-E-siliculosus-1a_M_contig7:10164..102411696250839.8814957-CDS-E-siliculosus-1a_M_contig7:10164..10241Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 10165..10241 +
1622935902.1051047-CDS-E-siliculosus-1a_M_contig7:10322..113761622935902.1051047-CDS-E-siliculosus-1a_M_contig7:10322..11376Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 10323..11376 +
1696250839.898716-CDS-E-siliculosus-1a_M_contig7:10322..113761696250839.898716-CDS-E-siliculosus-1a_M_contig7:10322..11376Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 10323..11376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15002.1

>prot_E-siliculosus-1a_M_contig7.15002.1 ID=prot_E-siliculosus-1a_M_contig7.15002.1|Name=mRNA_E-siliculosus-1a_M_contig7.15002.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=377bp
MNSARQTYNEALRLVKAKKAKANLLLKSATRDLVKNFKSARAAYTARLRK
VKFGKARIKKRRKSGQFKGRRRYKKRKPFELKFKSRRLTSDSIELEKKSI
SFEDNTVCFFGSTKKHKLRVDMSEAFSDEPGAHKPSQSCRLAYCFGRWYI
IVPEKVQIKKERADASVEPRIIGIDPGLRTAFTCSSNFGDVLEVGIDTRY
RFQREHGKKTSIAKKMRDATCVKKKTKLRKAWYRCQARAKHLAADLHWKT
IKHLLDRYDVIVVGKIGVQSLMSKTGQSTSNKRMFSYLSHYSFRQRLKYK
AGLLNKVVVEQDESYTSQACFRCGHLKKDLGPAKTYLCRECGLVIDRDVN
SGYNIMVRCASEHHSAETSVLGKRKS*
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mRNA from alignment at E-siliculosus-1a_M_contig7:9981..11376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15002.1 ID=mRNA_E-siliculosus-1a_M_contig7.15002.1|Name=mRNA_E-siliculosus-1a_M_contig7.15002.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1396bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:9981..11376+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATACACGAATCGTGGTTCAAGACAAAGACATATGCTCTTCCAAACAAGAG CTCACAGAAGATCTCGTGGCCATCATCCATGTGTTTTCCTGCAAGCTTCA CGGAAGCCGGAGATACAGGAACAAAGGCGAGAAAGATACGTCTAAAACCG GTGAAAAGAGCAGGAAAAAGTGCTTCGGAAGTGGATGAACTCTGCGAGAC AAACCTACAACGAAGCCCTGCGTCTCGTCAAGGCCAAGAAGGCCAAGGCC AATCTACTTCTGTCTAAGCTCGTTGTGACCGCCCGGGATACCGACAAGAA CTCTCGACTGGAAAGTATGAAGTTTGCTCCGGCTGATGTTAGGAAGTCAG CTACGCGTGACCTCGTCAAGAACTTTAAAAGTGCTCGTGCGGCGTACACA GCCCGGCTACGAAAGGTCAAGTTCGGAAAGGCGAGAATCAAGAAGAGACG CAAATCCGGCCAGTTTAAGGGGAGACGTCGCTACAAGAAAAGGAAGCCGT TCGAGCTGAAGTTCAAGTCCCGCCGTCTCACATCCGATTCTATTGAGCTA GAAAAGAAATCGATCTCGTTCGAAGACAACACGGTCTGCTTTTTCGGAAG CACCAAGAAGCACAAACTACGAGTTGACATGAGCGAGGCATTTTCGGATG AACCGGGCGCACACAAGCCTTCTCAGAGTTGCAGACTAGCCTACTGTTTT GGTAGATGGTACATCATCGTTCCAGAGAAGGTACAGATCAAGAAGGAGCG CGCCGACGCATCGGTGGAACCTCGAATCATCGGAATCGACCCTGGACTAC GAACAGCCTTCACGTGTTCTTCCAATTTCGGTGACGTCCTGGAGGTCGGG ATTGACACCCGTTATCGCTTTCAGAGAGAACACGGCAAAAAGACTTCCAT CGCTAAGAAGATGAGAGATGCGACGTGTGTGAAGAAGAAAACGAAGCTAA GGAAAGCTTGGTACCGCTGTCAAGCGAGAGCCAAGCATCTTGCAGCTGAC CTACACTGGAAAACCATCAAGCATCTTTTGGACAGATACGACGTTATTGT CGTCGGGAAGATCGGTGTTCAGTCTCTCATGTCCAAGACGGGACAGTCTA CCAGCAACAAGAGGATGTTTTCATACTTGAGCCACTACTCTTTCAGACAA AGGCTGAAGTACAAAGCCGGGCTACTCAACAAAGTTGTGGTCGAGCAGGA CGAATCGTATACGTCACAGGCATGTTTCCGGTGTGGCCATCTGAAAAAAG ACCTTGGTCCGGCGAAGACATATCTCTGCAGAGAGTGTGGGCTTGTGATA GATCGAGATGTCAACTCCGGATACAACATCATGGTCCGTTGCGCATCCGA GCACCACTCAGCGGAGACTTCTGTTTTGGGCAAGCGCAAGTCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:9981..11376+

>mRNA_E-siliculosus-1a_M_contig7.15002.1 ID=mRNA_E-siliculosus-1a_M_contig7.15002.1|Name=mRNA_E-siliculosus-1a_M_contig7.15002.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2262bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:9981..11376+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAACTCTGCGAGACAAACCTACAACGAAGCCCTGCGTCTCGTCAAGGC
CAAGAAGGCCAAGGCCAATCTACTTCTATGAACTCTGCGAGACAAACCTA
CAACGAAGCCCTGCGTCTCGTCAAGGCCAAGAAGGCCAAGGCCAATCTAC
TTCTGAAGTCAGCTACGCGTGACCTCGTCAAGAACTTTAAAAGTGCTCGT
GCGGCGTACACAGCCCGGCTACGAAAGGTCAAGTTCGGAAAGGCGAGAAT
CAAGAAGAGACGCAAATCCGGCCAGTTTAAGGGGAGACGTCGCTACAAGA
AAAGGAAGCCGTTCGAGCTGAAGTTCAAGTCCCGCCGTCTCACATCCGAT
TCTATTGAGCTAGAAAAGAAATCGATCTCGTTCGAAGACAACACGGTCTG
CTTTTTCGGAAGCACCAAGAAGCACAAACTACGAGTTGACATGAGCGAGG
CATTTTCGGATGAACCGGGCGCACACAAGCCTTCTCAGAGTTGCAGACTA
GCCTACTGTTTTGGTAGATGGTACATCATCGTTCCAGAGAAGGTACAGAT
CAAGAAGGAGCGCGCCGACGCATCGGTGGAACCTCGAATCATCGGAATCG
ACCCTGGACTACGAACAGCCTTCACGTGTTCTTCCAATTTCGGTGACGTC
CTGGAGGTCGGGATTGACACCCGTTATCGCTTTCAGAGAGAACACGGCAA
AAAGACTTCCATCGCTAAGAAGATGAGAGATGCGACGTGTGTGAAGAAGA
AAACGAAGCTAAGGAAAGCTTGGTACCGCTGTCAAGCGAGAGCCAAGCAT
CTTGCAGCTGACCTACACTGGAAAACCATCAAGCATCTTTTGGACAGATA
CGACGTTATTGTCGTCGGGAAGATCGGTGTTCAGTCTCTCATGTCCAAGA
CGGGACAGTCTACCAGCAACAAGAGGATGTTTTCATACTTGAGCCACTAC
TCTTTCAGACAAAGGCTGAAGTACAAAGCCGGGCTACTCAACAAAGTTGT
GGTCGAGCAGGACGAATCGTATACGTCACAGGCATGTTTCCGGTGTGGCC
ATCTGAAAAAAGACCTTGGTCCGGCGAAGACATATCTCTGCAGAGAGTGT
GGGCTTGTGATAGATCGAGATGTCAACTCCGGATACAACATCATGGTCCG
TTGCGCATCCGAGCACCACTCAGCGGAGACTTCTGTTTTGGGCAAGCGCA
AGTCGTAGGAAGTCAGCTACGCGTGACCTCGTCAAGAACTTTAAAAGTGC
TCGTGCGGCGTACACAGCCCGGCTACGAAAGGTCAAGTTCGGAAAGGCGA
GAATCAAGAAGAGACGCAAATCCGGCCAGTTTAAGGGGAGACGTCGCTAC
AAGAAAAGGAAGCCGTTCGAGCTGAAGTTCAAGTCCCGCCGTCTCACATC
CGATTCTATTGAGCTAGAAAAGAAATCGATCTCGTTCGAAGACAACACGG
TCTGCTTTTTCGGAAGCACCAAGAAGCACAAACTACGAGTTGACATGAGC
GAGGCATTTTCGGATGAACCGGGCGCACACAAGCCTTCTCAGAGTTGCAG
ACTAGCCTACTGTTTTGGTAGATGGTACATCATCGTTCCAGAGAAGGTAC
AGATCAAGAAGGAGCGCGCCGACGCATCGGTGGAACCTCGAATCATCGGA
ATCGACCCTGGACTACGAACAGCCTTCACGTGTTCTTCCAATTTCGGTGA
CGTCCTGGAGGTCGGGATTGACACCCGTTATCGCTTTCAGAGAGAACACG
GCAAAAAGACTTCCATCGCTAAGAAGATGAGAGATGCGACGTGTGTGAAG
AAGAAAACGAAGCTAAGGAAAGCTTGGTACCGCTGTCAAGCGAGAGCCAA
GCATCTTGCAGCTGACCTACACTGGAAAACCATCAAGCATCTTTTGGACA
GATACGACGTTATTGTCGTCGGGAAGATCGGTGTTCAGTCTCTCATGTCC
AAGACGGGACAGTCTACCAGCAACAAGAGGATGTTTTCATACTTGAGCCA
CTACTCTTTCAGACAAAGGCTGAAGTACAAAGCCGGGCTACTCAACAAAG
TTGTGGTCGAGCAGGACGAATCGTATACGTCACAGGCATGTTTCCGGTGT
GGCCATCTGAAAAAAGACCTTGGTCCGGCGAAGACATATCTCTGCAGAGA
GTGTGGGCTTGTGATAGATCGAGATGTCAACTCCGGATACAACATCATGG
TCCGTTGCGCATCCGAGCACCACTCAGCGGAGACTTCTGTTTTGGGCAAG
CGCAAGTCGTAG
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