prot_E-siliculosus-1a_F_contig1607.3488.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1607.3488.1
Unique Nameprot_E-siliculosus-1a_F_contig1607.3488.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length395
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3488.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 7.720e-49
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 
Query:  205 VFPARALEVHLMYGCALRLVKCVACGDEVTAKDLDSHKKDTCRRRLIACGNDGCFLQLPSEDMVAHREKECSRRRVWCLQGCGEEMR 291
            VFPARALEVH+MYGCALRLVKC ACGDEVTAKDLDSHKKDTCRRRLIACGNDGCFLQLPSEDMVAHREKECSRRRVWCLQGCGEEMR
Sbjct: 1911 VFPARALEVHMMYGCALRLVKCAACGDEVTAKDLDSHKKDTCRRRLIACGNDGCFLQLPSEDMVAHREKECSRRRVWCLQGCGEEMR 1997
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BLAST of mRNA_E-siliculosus-1a_F_contig1607.3488.1 vs. uniprot
Match: A0A6H5L3D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D7_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.910e-17
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0 
Query:  204 AVFPARALEVHLMYGCALRLVKCVACGDEVTAKDLDSHKKDTCR 247
            AVFPARALEVHLMYGCALRLVKC ACGDEVTAKDLDSHKKDTCR
Sbjct:  316 AVFPARALEVHLMYGCALRLVKCAACGDEVTAKDLDSHKKDTCR 359
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1607.3488.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI7.720e-4997.70Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L3D7_9PHAE3.910e-1797.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 241..298
e-value: 6.4E-5
score: 23.6
coord: 52..105
e-value: 7.7E-7
score: 29.7
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 240..290
score: 10.359
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 105..153
score: 10.504
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 21..65
score: 11.593
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 214..280
e-value: 1.2E-8
score: 36.6
coord: 1..52
e-value: 9.1E-11
score: 43.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 135..184
e-value: 5.0E-8
score: 35.1
coord: 53..115
e-value: 7.1E-9
score: 37.8
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 2..78
coord: 234..324
coord: 137..270
coord: 49..162
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 115..176
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 35..94
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 224..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1607contigE-siliculosus-1a_F_contig1607:25816..29971 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1607.3488.1mRNA_E-siliculosus-1a_F_contig1607.3488.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1607 25453..30061 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1607.3488.1 ID=prot_E-siliculosus-1a_F_contig1607.3488.1|Name=mRNA_E-siliculosus-1a_F_contig1607.3488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=395bp
MRPVACKACKNKVVASALSRHEAETCPMRMVECEQGCGEKVPVSGISRHL
AKTCPLMRVTCRLGCGQSMSLKMLAEHEKSLCSERFVKCRWRCSEDVKAK
HIDDHEKFECTHADAPCGNRCGLYLPLGDMKRHYADSCAHRFVPCGLGCG
YRVRAKDLPFHESNECESRLISCPSGCGGGGGSGGGGNDENKSGTATATA
TAAAVFPARALEVHLMYGCALRLVKCVACGDEVTAKDLDSHKKDTCRRRL
IACGNDGCFLQLPSEDMVAHREKECSRRRVWCLQGCGEEMRADERRRHHA
MACSMRYIPCPLGCPKKVPCKRYLYSFWGGTRGFGCQKLTITSTSFASGD
TWRRKKRVQTLKPLQLRRRSGDRLDITRRRGVVSVMLCLQRTGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF