prot_E-siliculosus-1a_F_contig1530.3078.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1530.3078.1
Unique Nameprot_E-siliculosus-1a_F_contig1530.3078.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length384
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1530.3078.1 vs. uniprot
Match: A0A6H5JEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE0_9PHAE)

HSP 1 Score: 502 bits (1292), Expect = 2.750e-175
Identity = 307/388 (79.12%), Postives = 317/388 (81.70%), Query Frame = 0 
Query:    1 MRREKRRRQGVGPCGAALLLVASLVPHSLAAGGFQGSHGGNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXX---QFHLSTNVAETLRERXXXXXXXXXXXXXXXX--GHQGDPPSPAGGDARRKAFLGAGRVQADRRAAALEPRAGAXXXXXXXXXXXXXXXXXXAQRGYAMQEPWDNNTXXXXXXSPDQGNDKRDKEGATGAAMGGPGMVSEGVPGSTPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMTGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVSRILTNVVFMSLCVTFAKARWVADGAF 383
            MRREKRRRQGVGPCGAALLLVASLVPHSLAAGGFQ      A                    XXXXXXXXX   QFHLSTNVAETLRER XXXXXXXXXXXXXXX  GHQGDP  PA GDARRKAFLGAG VQADRRAAALEP+AGA                  AQR YA+QEPWD++       S DQGND RD+EGATGAAMG P MVSEG P STPPPRTPLQE A+QNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQM GALRAMS+VPAVGLFLGNLVCMCLSLVESATN+QKARMKTML+VDAVCEGLLLVYNMLLLLGGASGLVPKEEFV RILTNVVF+SLCVTFAKARWVADGAF
Sbjct:    1 MRREKRRRQGVGPCGAALLLVASLVPHSLAAGGFQSRRQRAAQTTVIKQGRRWFTRGPRSRGXXXXXXXXXXXXQFHLSTNVAETLRERRXXXXXXXXXXXXXXXXQGHQGDPAFPAAGDARRKAFLGAGTVQADRRAAALEPQAGAGGGAGGAAFDPQRYRQQQAQRRYALQEPWDSSNN-----SHDQGNDNRDEEGATGAAMGVPEMVSEGAPASTPPPRTPLQEHAFQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLSVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFLSLCVTFAKARWVADGAF 383
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BLAST of mRNA_E-siliculosus-1a_F_contig1530.3078.1 vs. uniprot
Match: D7FSA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA4_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 4.440e-121
Identity = 182/184 (98.91%), Postives = 182/184 (98.91%), Query Frame = 0 
Query:  200 MGGPGMVSEGVPGSTPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMTGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVSRILTNVVFMSLCVTFAKARWVADGAF 383
            MGGPGMVSEGVPGSTPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQM GALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFV RILTNVVFMSLCVTFAKARWVADGAF
Sbjct:    1 MGGPGMVSEGVPGSTPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 184
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BLAST of mRNA_E-siliculosus-1a_F_contig1530.3078.1 vs. uniprot
Match: A0A835ZG70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG70_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.430e-18
Identity = 59/149 (39.60%), Postives = 89/149 (59.73%), Query Frame = 0 
Query:  237 LPGQAVG-----TQQPSSTLFRRS-GAGGVFFIFLVMVCRSLNHYEYAEQMTGAL-RAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVSRILTNVVFMSLCVTFAKARWV 378
            LPG+  G        P ++LF R   A G+  I+ +MV R ++HYE A+ +   L RA+++ P++ L + N  C+ L  +  AT K K RMK +LT++++ E +LL  N  LL+ G +  VPK E+VS +L NV F+S+C  FAK  WV
Sbjct:  159 LPGRPGGGAGGTATDPRNSLFMRQISAKGLAMIYFIMVWRLMHHYETADALRRPLARALAIAPSLALLVANAACLALCCLSGATLKHKLRMKLVLTLNSLAEAVLLGVNTWLLVMGPAR-VPKGEYVSSMLVNVWFLSICHNFAKMHWV 306
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1530.3078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEE0_9PHAE2.750e-17579.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA4_ECTSI4.440e-12198.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZG70_9STRA1.430e-1839.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..250
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 359..379
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 290..312
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 251..269
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 380..383
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 313..331
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 332..350
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 351..358
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 270..289
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.709
NoneNo IPR availableTMHMMTMhelixcoord: 250..272
NoneNo IPR availableTMHMMTMhelixcoord: 329..351
NoneNo IPR availableTMHMMTMhelixcoord: 356..378
NoneNo IPR availableTMHMMTMhelixcoord: 287..309

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1530contigE-siliculosus-1a_F_contig1530:24980..29736 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1530.3078.1mRNA_E-siliculosus-1a_F_contig1530.3078.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1530 24710..29748 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1530.3078.1 ID=prot_E-siliculosus-1a_F_contig1530.3078.1|Name=mRNA_E-siliculosus-1a_F_contig1530.3078.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=384bp
MRREKRRRQGVGPCGAALLLVASLVPHSLAAGGFQGSHGGNAPPRPPSSS
RGAAGSPADREARGGGGGEGGQFHLSTNVAETLRERRSGGGGGGRAGGGG
GQGHQGDPPSPAGGDARRKAFLGAGRVQADRRAAALEPRAGAGGGGGGPA
FDPQQYQQQQAQRGYAMQEPWDNNTNNNNNNSPDQGNDKRDKEGATGAAM
GGPGMVSEGVPGSTPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSST
LFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMTGALRAMSMVPAVGLFLGN
LVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLV
PKEEFVSRILTNVVFMSLCVTFAKARWVADGAF*
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