prot_E-siliculosus-1a_F_contig1518.3005.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1518.3005.1
Unique Nameprot_E-siliculosus-1a_F_contig1518.3005.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length545
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1518.3005.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE)

HSP 1 Score: 815 bits (2105), Expect = 8.820e-293
Identity = 454/521 (87.14%), Postives = 468/521 (89.83%), Query Frame = 0 
Query:    1 MPRAGDEEEEEEWRCLGDAREDETVGASRRRRNQTRIRTRGPQGGASANNSSAANGRSGRAARFSAARLPRNAARXXXXXXXXXXXXXSSGAVTAKKGKGRCQSGGGAAAGVVGSSAASKSSRSEND-GTRGAGERCKKRKSPRKVLGIFGIPVAWNVEDCDYDDSEDESYTQQAGGYGPPTDGATASAAKCTKIRGSTSVSSATRSRVGRGGRRRGTDWMAGLSTEVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARXXXXXXXXXXXXKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHLALEVDASNRGLRVLLEGCTRLKSLHIGSRSNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGLCCLLDPSACPRLHTLTLVKTGRVNDHCLKAMAPAMGRLTSLTLDQCPVKPSTVQFILDKCPELTSIVVSTQHGL 520
            MPR+GD+EEE  WRCLGDAREDETVGASRRRRN+TR RTRGPQGGASANNSSAANGRSGRAARFSAARLPRNAARXXXXXXXXXXXXX SGAVT K+G+GRCQSG                SRSEND GT  AGERCKKRKS RKV GIFGIPVAWNVEDCDYDDSEDESYTQQ+GG GPPT GATA AAKCTK RGSTSVSSATRSRV RGGRRRGTDWMA LS +VVLHGIIRPYLCSTSKCALQRTCNQMRRLLD+PDAWETLDLRAH+IGRRTMKSGRQSILSRQPLFFLAR            KTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHLALEVD SNRGL+VLLEGCTRLKSLHIGSRSN+AGDSISMYPNDLGMKAFT VGAPYLETLTLVDK NIGAAGL CLLDPSACPRL  LTLV+TGRVN+HCLKA+APAMGRLTSLTLDQC V PSTVQFILDKCPELTSIVVSTQHGL
Sbjct:    1 MPRSGDDEEE--WRCLGDAREDETVGASRRRRNETRTRTRGPQGGASANNSSAANGRSGRAARFSAARLPRNAARXXXXXXXXXXXXXXSGAVTTKEGQGRCQSGXXXXXXXXXXXXXXXXSRSENDDGTPEAGERCKKRKSTRKVPGIFGIPVAWNVEDCDYDDSEDESYTQQSGGSGPPTVGATAFAAKCTKTRGSTSVSSATRSRVVRGGRRRGTDWMAELSADVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDSPDAWETLDLRAHIIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLL-KTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHLALEVDDSNRGLKVLLEGCTRLKSLHIGSRSNRAGDSISMYPNDLGMKAFTTVGAPYLETLTLVDKFNIGAAGLRCLLDPSACPRLRKLTLVRTGRVNNHCLKAIAPAMGRLTSLTLDQCLVDPSTVQFILDKCPELTSIVVSTQHGL 518
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1518.3005.1 vs. uniprot
Match: D7FPP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP5_ECTSI)

HSP 1 Score: 552 bits (1422), Expect = 1.950e-192
Identity = 280/301 (93.02%), Postives = 284/301 (94.35%), Query Frame = 0 
Query:  220 MAGLSTEVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARXXXXXXXXXXXXKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHLALEVDASNRGLRVLLEGCTRLKSLHIGSRSNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGLCCLLDPSACPRLHTLTLVKTGRVNDHCLKAMAPAMGRLTSLTLDQCPVKPSTVQFILDKCPELTSIVVSTQHGL 520
            MA LSTEVVLHGIIRPYLCSTSKCALQRTCNQM RLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLAR            KTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGV HLALEVDASNRGLRVLLEGCTRLKSLHIGSRSNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGL CLL+PSACPRL TLTLV+TGRVNDHCLKA+APAMGRLTSLTLDQCPVKPSTVQFILDKCPELTS+VVSTQHGL
Sbjct:    1 MAELSTEVVLHGIIRPYLCSTSKCALQRTCNQMHRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLL-KTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVHHLALEVDASNRGLRVLLEGCTRLKSLHIGSRSNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGLRCLLNPSACPRLRTLTLVRTGRVNDHCLKAIAPAMGRLTSLTLDQCPVKPSTVQFILDKCPELTSMVVSTQHGL 300
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1518.3005.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCS2_9PHAE8.820e-29387.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPP5_ECTSI1.950e-19293.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 222..524
e-value: 5.5E-27
score: 96.5
NoneNo IPR availablePANTHERPTHR38926FAMILY NOT NAMEDcoord: 306..401
coord: 453..515
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 307..516

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1518contigE-siliculosus-1a_F_contig1518:9307..14640 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1518.3005.1mRNA_E-siliculosus-1a_F_contig1518.3005.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1518 8331..14641 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1518.3005.1 ID=prot_E-siliculosus-1a_F_contig1518.3005.1|Name=mRNA_E-siliculosus-1a_F_contig1518.3005.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=545bp
MPRAGDEEEEEEWRCLGDAREDETVGASRRRRNQTRIRTRGPQGGASANN
SSAANGRSGRAARFSAARLPRNAARSSSRSTAKSSQNSSSGAVTAKKGKG
RCQSGGGAAAGVVGSSAASKSSRSENDGTRGAGERCKKRKSPRKVLGIFG
IPVAWNVEDCDYDDSEDESYTQQAGGYGPPTDGATASAAKCTKIRGSTSV
SSATRSRVGRGGRRRGTDWMAGLSTEVVLHGIIRPYLCSTSKCALQRTCN
QMRRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQ
QPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDE
RLPQPQFSVETVIAQHLPGVRHLALEVDASNRGLRVLLEGCTRLKSLHIG
SRSNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGLCCLL
DPSACPRLHTLTLVKTGRVNDHCLKAMAPAMGRLTSLTLDQCPVKPSTVQ
FILDKCPELTSIVVSTQHGLPAATGRPSPTGISPGSGSVKAIKD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf