prot_E-siliculosus-1a_F_contig1458.2679.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1458.2679.1
Unique Nameprot_E-siliculosus-1a_F_contig1458.2679.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length422
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1458.2679.1 vs. uniprot
Match: A0A6H5JD66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD66_9PHAE)

HSP 1 Score: 560 bits (1444), Expect = 3.460e-197
Identity = 393/421 (93.35%), Postives = 404/421 (95.96%), Query Frame = 0 
Query:    1 MPVPQHSSIAMNGKMCVSKTMLLLVFVSVDGGGPSKIYAVDAFVPPSPPSYTTPSRGILNSDCRNRPRWLQQLNLPLRLLQDELLLSRSSRGKKSSLSMGGKATDLGASPWKTDSRSVREWLGLSEREIDKLREPLTSASRRNLLDQRLDLLPNGQTDSVLGFLRVEFRMSRANIRSLISRHPQLLFMPRQQAVDRCSWLSENLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVEWFRSYLGMXXXXXXXXXXXXXXXXSFKPDENTEDTARFLESXXXXXXXXXXXXXXXXXXXXXXIEEKVIPMLEWLQKELRASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYRICPRATLMVERGVVPDFGEHRWLLTTASEENFEQWMKANSGTRRL 421
            MPVP+HSSIAMN K+CVSKTMLLL+FVS+DGG  SKI+AVDAFVPP P SY+T  RGIL+S CRNRPRWLQQLNLPLRLLQD+LLLSRSS GKKSSLSMGGK TDLGA PWKTDSRSVREWLGLSEREIDKLRE LTSASRRNLLDQRLDLL NGQTDSVLGFLRVEFRMS+ANIRSLISRHPQLLFMPRQQAVDRCSWLSENLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLV+WFRSYLG XXXXXXXXXXXXXXXXSFKPDEN EDTARFLESXXXXXXXXXXXXXXXXXXXXXX  EKVIPMLEWLQKELRASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYRICPRATLMVERG+VPDFGEHRWLLTTASEENFEQWMKANSGTRRL
Sbjct:    1 MPVPEHSSIAMNDKICVSKTMLLLLFVSIDGGRLSKIHAVDAFVPPRPVSYST-GRGILDSRCRNRPRWLQQLNLPLRLLQDDLLLSRSSPGKKSSLSMGGKGTDLGALPWKTDSRSVREWLGLSEREIDKLRETLTSASRRNLLDQRLDLLANGQTDSVLGFLRVEFRMSKANIRSLISRHPQLLFMPRQQAVDRCSWLSENLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVDWFRSYLGXXXXXXXXXXXXXXXXXSFKPDENIEDTARFLESXXXXXXXXXXXXXXXXXXXXXXXXEKVIPMLEWLQKELRASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYRICPRATLMVERGIVPDFGEHRWLLTTASEENFEQWMKANSGTRRL 420
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BLAST of mRNA_E-siliculosus-1a_F_contig1458.2679.1 vs. uniprot
Match: D8LLI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI6_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 3.080e-138
Identity = 313/323 (96.90%), Postives = 314/323 (97.21%), Query Frame = 0 
Query:   99 MGGKATDLGASPWKTDSRSVREWLGLSEREIDKLREPLTSASRRNLLDQRLDLLPNGQTDSVLGFLRVEFRMSRANIRSLISRHPQLLFMPRQQAVDRCSWLSENLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVEWFRSYLGMXXXXXXXXXXXXXXXXSFKPDENTEDTARFLESXXXXXXXXXXXXXXXXXXXXXXIEEKVIPMLEWLQKELRASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYRICPRATLMVERGVVPDFGEHRWLLTTASEENFEQWMKANSGTRRL 421
            MGGKATDLGASPWKTDSRSVREWLGLSEREIDKLR  LTSASRRNLLDQRLDLL NGQTDSVLGFLRVEFRMS+ANIRSLISRHPQLLFMPRQQAVDRCSWLSE LSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVEWFRSYLG XXXXXXXXXXXXXXXXSFKPDEN EDTARFLESXXXXXXXXXXXXXXXXXXXXXX  EKVIPMLEWLQKELRASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYRICPRATLMVERGVVPDFGEHRWLLTTASEENFEQWMKANSGT RL
Sbjct:    1 MGGKATDLGASPWKTDSRSVREWLGLSEREIDKLRGALTSASRRNLLDQRLDLLANGQTDSVLGFLRVEFRMSKANIRSLISRHPQLLFMPRQQAVDRCSWLSETLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVEWFRSYLGXXXXXXXXXXXXXXXXXSFKPDENIEDTARFLESXXXXXXXXXXXXXXXXXXXXXXXXEKVIPMLEWLQKELRASPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYRICPRATLMVERGVVPDFGEHRWLLTTASEENFEQWMKANSGTYRL 323
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JD66_9PHAE3.460e-19793.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLI6_ECTSI3.080e-13896.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 176..207
e-value: 2600.0
score: 0.7
coord: 249..280
e-value: 0.019
score: 24.2
coord: 285..317
e-value: 0.0071
score: 25.6
coord: 212..244
e-value: 0.094
score: 21.8
coord: 359..390
e-value: 15.0
score: 14.6
coord: 322..354
e-value: 0.073
score: 22.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 241..392
e-value: 2.6E-24
score: 85.8
coord: 168..322
e-value: 3.3E-19
score: 69.0
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 141..229
e-value: 6.2E-10
score: 40.7
coord: 230..392
e-value: 7.5E-28
score: 99.4
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 298..412
coord: 270..315
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 298..412
coord: 270..315
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..421
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 22..29
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.518

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1458contigE-siliculosus-1a_F_contig1458:6411..10438 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1458.2679.1mRNA_E-siliculosus-1a_F_contig1458.2679.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1458 6401..10715 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1458.2679.1 ID=prot_E-siliculosus-1a_F_contig1458.2679.1|Name=mRNA_E-siliculosus-1a_F_contig1458.2679.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=422bp
MPVPQHSSIAMNGKMCVSKTMLLLVFVSVDGGGPSKIYAVDAFVPPSPPS
YTTPSRGILNSDCRNRPRWLQQLNLPLRLLQDELLLSRSSRGKKSSLSMG
GKATDLGASPWKTDSRSVREWLGLSEREIDKLREPLTSASRRNLLDQRLD
LLPNGQTDSVLGFLRVEFRMSRANIRSLISRHPQLLFMPRQQAVDRCSWL
SENLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVEWFRSYLGMDTREVAR
LVVRLPQLFSFKPDENTEDTARFLESLGLSRKEVCKMVLLHPETFSYSIE
EKVIPMLEWLQKELRASPDEVIQMVARYPSLLGCSQTKNLAPKFCFFRTT
LKASVADIRAAVVATPSLLGYSLDYRICPRATLMVERGVVPDFGEHRWLL
TTASEENFEQWMKANSGTRRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF