prot_E-siliculosus-1a_F_contig1394.2333.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1394.2333.1
Unique Nameprot_E-siliculosus-1a_F_contig1394.2333.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length666
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2333.1 vs. uniprot
Match: D8LEW8_ECTSI (CDT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW8_ECTSI)

HSP 1 Score: 929 bits (2402), Expect = 0.000e+0
Identity = 543/619 (87.72%), Postives = 553/619 (89.34%), Query Frame = 0 
Query:   49 MTKMNMSTRGRAVRVAAAAGAVVSQERGHRSARVTETRSNEAAPATAVRSSPRRSKKSAAAGGPQGTPLPTAVSRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--KTAGGAADGESAMKMLATLLSPVAAARQDTRPPDAQHDQAPGTPASSQGAQESSASGRDSGDGHDLDPCPLEAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTKQHIAQIAFVQPDAYKLSSRTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARRHRVGKGPAAGKGAVASADRGXXXXXXXXXXSNAGVEALSARRREIFLRLLGSARARHCKCGGSGGIAGGPSAPRDECSCLPQAPLPDTRPLRADGIGGGSRAAADAGVTVESPSTSQGLERSPGDGRSGGSDVGGDLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRVWMLASIVPEWCTIIAPPAPSAGGGGGIDGGLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGGGASQ 665
            MTK NMSTRGRAVRVAAAAGA V QERG  SARVTETRSNEAAPATAVRSSPRRSKKSAAAGGPQGTPLPTAVSR  XXXXXXXXXXXXXXX                            XXXXXXXXXXD   TAGGAADG++AMKMLATLLSPVAAARQDTRPPDAQHDQAPGTP SS+GAQESSASGRDSG+GHDLDPCPLEAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFT+QH+A+IAFVQPDAYKLSSRTDARPTRGGYRL+DIFIETGPSPPPADEACLDDDTQGARR RVGK PAAGKGAVA ADR           S AG EALSARRREIFLRLL SA+ARHCKCGGS GIAGGPSAPRDECSCLPQAPLPDTRPLRADGIGGGSRAA DAG  VESPSTSQGLERSPGDGRSGG   GG+LLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKT EEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRV MLASIVPEWCTIIAP APSAGGGGGIDGGLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGGGASQ
Sbjct:    1 MTKTNMSTRGRAVRVAAAAGAAVGQERGRCSARVTETRSNEAAPATAVRSSPRRSKKSAAAGGPQGTPLPTAVSRXXXXXXXXXXXXXXXXXTPGATAATTIPAVAVRASLQKARNNKSGXXXXXXXXXXDTDNTAGGAADGDAAMKMLATLLSPVAAARQDTRPPDAQHDQAPGTPISSRGAQESSASGRDSGEGHDLDPCPLEAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTRQHLARIAFVQPDAYKLSSRTDARPTRGGYRLKDIFIETGPSPPPADEACLDDDTQGARRDRVGKAPAAGKGAVAGADRDGRNGGDTGGHSIAGGEALSARRREIFLRLLASAKARHCKCGGSRGIAGGPSAPRDECSCLPQAPLPDTRPLRADGIGGGSRAAPDAGGAVESPSTSQGLERSPGDGRSGGGG-GGNLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKTEEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRVRMLASIVPEWCTIIAPRAPSAGGGGGIDGGLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGGGASQ 618
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2333.1 vs. uniprot
Match: A0A6H5K955_9PHAE (CDT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K955_9PHAE)

HSP 1 Score: 691 bits (1784), Expect = 5.070e-245
Identity = 375/413 (90.80%), Postives = 382/413 (92.49%), Query Frame = 0 
Query:  253 MFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTKQHIAQIAFVQPDAYKLSSRTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARRHRVGKGPAAGKGAVASADRGXXXXXXXXXXSNAGVEALSARRREIFLRLLGSARARHCKCGGSGGIAGGPSAPRDECSCLPQAPLPDTRPLRADGIGGGSRAAADAGVTVESPSTSQGLERSPGDGRSGGSDVGGDLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRVWMLASIVPEWCTIIAPPAPSAGGGGGIDGGLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGGGASQ 665
            MFLALEQVL LFRRRRQATLLKQIKPAVEGMCGRSFT+QH+AQIAFVQPDAYKLSS+TDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARR RVGK PAAGKGAVA AD  XXXXXXXXX SNAG EALSARRR IFLRLL SARARHCKCGGS GI   PSAPRDECSCLPQAPLPDTRPLRADGI GGSRAAA AG   ESPSTSQGLERSP DGR GG  +GG+LLPGT RGGCVASGM GGRVDYDEEG DAPKN+EALRERLRQKDALSAKERNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVL+EALSSSSKHALS KEARDRV MLASIVPEWCTIIAPPAP AGGGGGIDGGLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSG  ASQ
Sbjct:    1 MFLALEQVLTLFRRRRQATLLKQIKPAVEGMCGRSFTRQHLAQIAFVQPDAYKLSSKTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARRDRVGKAPAAGKGAVAGADXXXXXXXXXXXRSNAGGEALSARRRGIFLRLLASARARHCKCGGSEGITNEPSAPRDECSCLPQAPLPDTRPLRADGISGGSRAAAHAGGAAESPSTSQGLERSPVDGRCGGGGIGGNLLPGTSRGGCVASGMSGGRVDYDEEGPDAPKNLEALRERLRQKDALSAKERNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLMEALSSSSKHALSRKEARDRVRMLASIVPEWCTIIAPPAPLAGGGGGIDGGLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGSAASQ 413
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1394.2333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW8_ECTSI0.000e+087.72CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K955_9PHAE5.070e-24590.80CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 518..538
NoneNo IPR availableGENE3D1.10.10.1420coord: 510..614
e-value: 2.1E-14
score: 55.4
NoneNo IPR availablePANTHERPTHR28637FAMILY NOT NAMEDcoord: 519..612
coord: 233..307
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 24..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..665
IPR014939CDT1 Geminin-binding domain-likeSMARTSM01075CDT1_2coord: 250..436
e-value: 0.0031
score: 4.7
IPR014939CDT1 Geminin-binding domain-likePFAMPF08839CDT1coord: 250..399
e-value: 4.8E-14
score: 53.0
IPR032054DNA replication factor Cdt1, C-terminalPFAMPF16679CDT1_Ccoord: 521..612
e-value: 3.1E-14
score: 53.2
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 250..324

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1394contigE-siliculosus-1a_F_contig1394:15751..20548 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1394.2333.1mRNA_E-siliculosus-1a_F_contig1394.2333.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1394 15683..21553 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1394.2333.1 ID=prot_E-siliculosus-1a_F_contig1394.2333.1|Name=mRNA_E-siliculosus-1a_F_contig1394.2333.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=666bp
MKRRIATSNACPPSKKRSTRGAELLAAAAAGGASSSSSAAGPIQTNGKMT
KMNMSTRGRAVRVAAAAGAVVSQERGHRSARVTETRSNEAAPATAVRSSP
RRSKKSAAAGGPQGTPLPTAVSRRTTAKRFSSGGGGKRAATPGATAATTI
PAVAARASSQKARDNKSGGGTGSGGGDTDKTAGGAADGESAMKMLATLLS
PVAAARQDTRPPDAQHDQAPGTPASSQGAQESSASGRDSGDGHDLDPCPL
EAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTKQHIAQIAFVQ
PDAYKLSSRTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGARRH
RVGKGPAAGKGAVASADRGGRSGGDTGGRSNAGVEALSARRREIFLRLLG
SARARHCKCGGSGGIAGGPSAPRDECSCLPQAPLPDTRPLRADGIGGGSR
AAADAGVTVESPSTSQGLERSPGDGRSGGSDVGGDLLPGTFRGGCVASGM
GGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKTAEEKEADRRRK
GNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRVWM
LASIVPEWCTIIAPPAPSAGGGGGIDGGLVARPMKGKDVVRVNTRIRFDE
VRQMIAFMSGGGASQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR032054Cdt1_C
IPR014939CDT1_Gemini-bd-like