prot_E-siliculosus-1a_F_contig1379.2254.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1379.2254.1
Unique Nameprot_E-siliculosus-1a_F_contig1379.2254.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length587
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2254.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 723 bits (1865), Expect = 1.250e-256
Identity = 488/540 (90.37%), Postives = 492/540 (91.11%), Query Frame = 0 
Query:   47 MLRLAYLACLYLWYEFCSWANIKHRASQGQTCVGESSGEHTRVDEEDHGASAQASLASALPADLVKRKSQGQCRAHGTTGSSRHAGAKRNSASPFEVCPSAAGQDCMGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADIAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLVATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKGKERSLPPSLGDVLQLTEIDLNGNALGGIIPXXXXXXXXXXXXXXXXXRLVEGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLDRNKLGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSQLRGVEDEERLGQLFPNCEISVSSWTNEWG 586
            MLRLAYLACLYLWY+FCSW NIKHRASQGQTCVGE SGEHTRVDEEDHGASAQASLASALPADLVKRK QGQ R HGTTGSSRHAGAKRNSASPFEVCPS AGQD MGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVAD+AFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRL+ATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKG   SLPPSLGDVLQ                XXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AT QLRGVEDEERLGQLFPNCEISV+SWTNEWG
Sbjct:    1 MLRLAYLACLYLWYDFCSWTNIKHRASQGQTCVGELSGEHTRVDEEDHGASAQASLASALPADLVKRKRQGQYRTHGTTGSSRHAGAKRNSASPFEVCPSPAGQDSMGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKG---SLPPSLGDVLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLNLATGQLRGVEDEERLGQLFPNCEISVASWTNEWG 536
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2254.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 6.000e-44
Identity = 114/284 (40.14%), Postives = 163/284 (57.39%), Query Frame = 0 
Query:  160 AGGNSEDL----RRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADIAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLV--NRFGAENAAMPTERNSKRLVATAFQVMQVDPGFLNGELGYIREKL-EVSRLNLGRFGLKGKERSLPPSLGDVLQLTEIDLNGN 435
            +GG+S  L    R+ LKR  I  ++TP+ +L+S V DLDL  DW FL+ GL     L+  +A    +VGTVM+ L T EF  +S+    W  +G  LS LQHV LGWQLL NV +ED+PQ +IT +T PTSV GVLN+  +G +L AK+  G++++    +S+Q +MID DP V ++L   R +A++ A  A  L  L   NR              ++  A  FQV+Q+DP F+ G+L Y+R  L   SRL +    L G    +P  +GD+  L  + L+GN
Sbjct:  139 SGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW--KGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCS----------TGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGP---IPSQVGDMTILRAVVLSGN 407
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2254.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 7.880e-30
Identity = 79/192 (41.15%), Postives = 110/192 (57.29%), Query Frame = 0 
Query:  160 AGGNSEDL----RRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQE-----------LVADIAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNAR 336
            +GG+S  L    R+ LKR  I  ++TP+ +L+S V DLDL  DW FL+ GL    E           L+  +A    +VGTVM+ L T EF  +S+             LQHV LGWQLL NV +ED+PQ +IT +T PTSV GVLN+  +G +L AK+  G +++    +S+Q +MID DP V ++L   R
Sbjct:  189 SGGHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKL------KNMWKVLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2254.1 vs. uniprot
Match: D7FK10_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK10_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.690e-8
Identity = 62/186 (33.33%), Postives = 91/186 (48.92%), Query Frame = 0 
Query:  171 LKRSAIWEKVTPLTVLTSVVSDLDLFADW--YFLQEGLEDAQ-ELVADIAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVP--LGWQLLLNVVVEDIPQLVITWVTSP-TSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQH-------LLNARHKAEELA 343
            LK     + V+    L+S+ +D+D+  DW  YF  E   DA  E + + +   T+ GT+ +VLL       ++   W R G              W LL NVV+ED+PQL IT +T+  T+VAG +NIA + F+ LAK AE  A+  +  +     M  T  G V+        LL  + +AE LA
Sbjct:   41 LKARLTRDTVSSSLALSSIAADIDVVTDWFFYFSDEVQNDASFEGLKEASLFFTLFGTLTWVLLA------TDCPGWLRNGACPDTTGRAGRYFSWPLL-NVVLEDLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHMAATAKGRVESVIELKNALLGKKQEAEVLA 219
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1379.2254.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK13_ECTSI1.250e-25690.37Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
D7G1J8_ECTSI6.000e-4440.14Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JNU7_9PHAE7.880e-3041.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK10_ECTSI1.690e-833.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 521..545
e-value: 23.0
score: 10.2
coord: 473..496
e-value: 46.0
score: 7.8
coord: 448..472
e-value: 24.0
score: 10.1
coord: 424..447
e-value: 66.0
score: 6.5
coord: 497..519
e-value: 64.0
score: 6.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 474..534
e-value: 4.5E-10
score: 39.1
coord: 424..461
e-value: 8.3E-7
score: 28.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 463..585
e-value: 3.9E-31
score: 109.9
coord: 391..462
e-value: 4.2E-11
score: 44.4
NoneNo IPR availablePANTHERPTHR27008:SF356coord: 396..516
NoneNo IPR availablePANTHERPTHR27008:SF356coord: 428..560
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 428..560
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 396..516
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..60
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 61..586
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..41
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 400..561

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1379contigE-siliculosus-1a_F_contig1379:7921..13152 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1379.2254.1mRNA_E-siliculosus-1a_F_contig1379.2254.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1379 7594..13152 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1379.2254.1 ID=prot_E-siliculosus-1a_F_contig1379.2254.1|Name=mRNA_E-siliculosus-1a_F_contig1379.2254.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=587bp
PTAAHNSSYGGKREREEEFPTRWARATSSAQGKARSERLRPLRSTLMLRL
AYLACLYLWYEFCSWANIKHRASQGQTCVGESSGEHTRVDEEDHGASAQA
SLASALPADLVKRKSQGQCRAHGTTGSSRHAGAKRNSASPFEVCPSAAGQ
DCMGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWY
FLQEGLEDAQELVADIAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRA
LSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALL
AKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLA
VLVNRFGAENAAMPTERNSKRLVATAFQVMQVDPGFLNGELGYIREKLEV
SRLNLGRFGLKGKERSLPPSLGDVLQLTEIDLNGNALGGIIPGSFGDLTA
LTTLNLGGNRLVEGHIPPELGGLRELRELNLQDNDLTGTIPAALGNLSKL
ERLYLDRNKLGGALPRELGTLHALRVLYLGGNLITGEIPQGLAALTDLQQ
LNLATSQLRGVEDEERLGQLFPNCEISVSSWTNEWG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp