prot_E-siliculosus-1a_F_contig1343.2054.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1343.2054.1
Unique Nameprot_E-siliculosus-1a_F_contig1343.2054.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length743
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1343.2054.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 536 bits (1380), Expect = 6.490e-173
Identity = 539/593 (90.89%), Postives = 544/593 (91.74%), Query Frame = 0 
Query:  150 QSSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAALTAQCRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQARSTIGHWVLTRLFRGCRALETLSLARCSRVGDEELKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSELPFKVGDVTLMALGEGCPGLQWLSLKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIKARIYKFFGLSPLPKMRERIAIKEYASLHMGARKIQG 742
            +S++N VG HIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVA LTAQCRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSELPFKVGDVTLMALGEGCP LQWLS+KGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLE+LDLREV SLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK    KFFGLSPLPKMRERIAIKEYASLHMGARKIQG
Sbjct:    8 KSNIN-VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSELPFKVGDVTLMALGEGCPELQWLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLELLDLREVLSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIKVGD-KFFGLSPLPKMRERIAIKEYASLHMGARKIQG 594
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BLAST of mRNA_E-siliculosus-1a_F_contig1343.2054.1 vs. uniprot
Match: A0A7S1U2X0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2X0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.090e-21
Identity = 174/363 (47.93%), Postives = 215/363 (59.23%), Query Frame = 0 
Query:  381 SRSELPFKVGDVTLMALGEGCPGLQWLSLKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRRLCLRGV-VGVPPPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQMEK-LEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIKARIYKFFGLSPLPKMRERIAIKEYASLHMGARKIQ 741
            SRSE PFKV D++LMALGE  P L+ L L GC+ +TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LSDGM+RDF L G+QAL      +Q L L GCFQIS TA+R++                                          +   +  V +F R   R    CLR + +     L   G+  + + C  L+ L+L     L D A++   + Q    L  + L +C  I+ AG+ W+  G  +L +L+L+GT+ T TAL +I +RY YS +  R   FFGL PL +  +R  I EY ++     KIQ
Sbjct:  313 SRSEFPFKVTDISLMALGERTPYLETLLLSGCNMLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLSDGMKRDFGLEGLQALCGDLDEVQHLHLHGCFQISTTAMRAIANGLGAPLRSLSLSNCPKLTLNGMQALWEHCASLEYLSL---NGCGENIVDNFFRPLVRRPAACLRTLELEDAECLTHTGVAYLVAGCPQLDKLNLSGCVGLNDEAMLHLGESQFYPGLRHLHLTNCTNISDAGLSWMSDGVDSLYTLSLRGTRCTYTALRVIADRYRYSHM-VRNANFFGLYPLRRALDRKMINEYGAMIKATIKIQ 671
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1343.2054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPS0_ECTSI6.490e-17390.89Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A7S1U2X0_9STRA3.090e-2147.93Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 649..674
e-value: 17.0
score: 12.8
coord: 453..478
e-value: 0.0093
score: 25.2
coord: 372..400
e-value: 130.0
score: 5.9
coord: 238..263
e-value: 3.8E-4
score: 29.8
coord: 401..426
e-value: 0.097
score: 21.8
coord: 565..591
e-value: 3.2E-4
score: 30.0
coord: 592..621
e-value: 260.0
score: 3.6
coord: 539..564
e-value: 0.0074
score: 25.5
coord: 479..512
e-value: 0.016
score: 24.3
coord: 212..237
e-value: 130.0
score: 5.7
coord: 264..289
e-value: 130.0
score: 5.9
coord: 346..371
e-value: 6.7E-4
score: 29.0
coord: 513..538
e-value: 0.55
score: 19.3
coord: 320..345
e-value: 0.11
score: 21.7
coord: 427..452
e-value: 9.8E-5
score: 31.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 346..367
e-value: 1.5
score: 9.1
coord: 215..234
e-value: 0.31
score: 11.2
coord: 263..285
e-value: 1.1
score: 9.5
coord: 428..450
e-value: 0.38
score: 10.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 306..385
e-value: 1.2E-14
score: 55.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 470..606
e-value: 9.7E-30
score: 105.3
coord: 192..305
e-value: 4.1E-21
score: 76.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 386..469
e-value: 3.4E-18
score: 67.6
coord: 613..707
e-value: 3.7E-10
score: 41.4
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 344..689
coord: 282..550
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 344..689
coord: 119..342
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 119..342
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 282..550
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 216..569
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 511..687

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1343contigE-siliculosus-1a_F_contig1343:3210..14132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1343.2054.1mRNA_E-siliculosus-1a_F_contig1343.2054.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1343 3210..25452 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1343.2054.1 ID=prot_E-siliculosus-1a_F_contig1343.2054.1|Name=mRNA_E-siliculosus-1a_F_contig1343.2054.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=743bp
MAADPNFLTRKQSLAPLQSNPRAPVAAFGRGTPDGSCDDISNGGERGGSP
AAHEPSVTFSAENGSGLTGSAPADAVAATLAGVAESVKSAIKAYEHTTRL
PYDSVPAEVCRARDGTKSIDLAAWSLLVDDAALRCIAAGDRDRIDKLACQ
SSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSE
EIERAQDRFTDQEGLTSLDISGAQGVGDSGVAALTAQCRRLQSLNMSGAS
RVTDVAIRSLAVNCTGLTQLNLSGCLGICGPGLAAVGECCPKLVHLDLSD
CKQARSTIGHWVLTRLFRGCRALETLSLARCSRVGDEELKELGVGCRGLV
RLDLKGCNQVSDTGLLEVARRCSSLTVLELSRSELPFKVGDVTLMALGEG
CPGLQWLSLKGCDGVTDVGLAWMSSGCPALEYLDVSGCVKVSNAGVTSLC
ERCPLLEHLGMASLKHVTDIGVARLGSSCTRLTHLDLSGIVNLSDGMQRD
FALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGGGLRSLKRLSLARC
PGLSQEGMAAVAKGCPNLTELNLPNCGSAVTDAAVASFARGCRRLRRLCL
RGVVGVPPPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQME
KLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERY
PYSRIKARIYKFFGLSPLPKMRERIAIKEYASLHMGARKIQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp