prot_E-siliculosus-1a_F_contig1304.1857.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1304.1857.1
Unique Nameprot_E-siliculosus-1a_F_contig1304.1857.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length546
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1857.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 4.620e-113
Identity = 322/442 (72.85%), Postives = 329/442 (74.43%), Query Frame = 0 
Query:    1 MGNKMSVSSTFSHASSGGSNSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGINIDXXXXXXXXXXXXXGVDGGTAYPSSTVPPXXXXXXXXXXXXNTHRFYHPETPRRETAFHCATWPQLRTPPSAESSETSSLSGGATEGGGSMFVAGSTPADSPSRTAXXXXXXXTASVSTPRGAFGAATEVGLERYPMFSLSSLRRIGGVAAAFGGFSTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSRVSDTGGQGYFTRSRRRFSTQQSGGTREGLALEGWSGSARGAAREQREVGGAGFSWDSGRAPAARAAPSTAPARRYIRAFTFGSLTSRSRRGSTGVTRSFDERGERRGNALPRQAPYLAPPDWTGTPPRSGPQRVRCP-----SRATTVTEEST 437
            MGNK+SVSSTFS+ASSGGSNSRR        XXXXXXX              INID      XXXXX  GVDGGTAY SST  P            NTHRFYHPETPRRETAFHCATWPQLRTP SAESSETSSLSGGATEGGGSMF AGSTPADSPS TA       TASVSTPR AFGAA +VGLERYPMFSLSSLRR+GGVAAAFGGFSTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXX                               LALEG  GSARGAAREQRE+GGA FSWDSGRAPA RAAPSTAPARRYI AFTFGSLTSRSRRGSTGVTRSFDERGE R +A PRQ P+LAPPD TGTP RSGPQR  CP     SRATTVTEE T
Sbjct:    1 MGNKLSVSSTFSYASSGGSNSRRGRGSSYSIXXXXXXXISS-----------INIDSSSRSTXXXXXSRGVDGGTAYTSSTRTPPRLNDDSGSGGGNTHRFYHPETPRRETAFHCATWPQLRTPSSAESSETSSLSGGATEGGGSMFAAGSTPADSPSGTAAAAA---TASVSTPRRAFGAAAQVGLERYPMFSLSSLRRVGGVAAAFGGFSTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSICFSXXXXXXXXXXXXX----------------------------LALEGLGGSARGAAREQREIGGAHFSWDSGRAPATRAAPSTAPARRYIPAFTFGSLTSRSRRGSTGVTRSFDERGESRESAPPRQPPHLAPPDRTGTPHRSGPQRAPCPRALEDSRATTVTEEWT 400
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1857.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTI9_9PHAE4.620e-11372.85RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1304contigE-siliculosus-1a_F_contig1304:28723..31945 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1304.1857.1mRNA_E-siliculosus-1a_F_contig1304.1857.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1304 28723..32150 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1304.1857.1 ID=prot_E-siliculosus-1a_F_contig1304.1857.1|Name=mRNA_E-siliculosus-1a_F_contig1304.1857.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=546bp
MGNKMSVSSTFSHASSGGSNSRRGSGSSSSYSRSSSSYSRSSSSSSGSSS
SGINIDSSSRSTNIDNSSRGVDGGTAYPSSTVPPPRLDDDSGSGGGNTHR
FYHPETPRRETAFHCATWPQLRTPPSAESSETSSLSGGATEGGGSMFVAG
STPADSPSRTAAAAAAAATASVSTPRGAFGAATEVGLERYPMFSLSSLRR
IGGVAAAFGGFSTDSDSGGGGGNGSSDSNSDSSDSSDSDNGNHNNRGFRS
AEDSCSDSSSISCSTRSIGFSDDDDGDGGGGGGGGGPSRVSDTGGQGYFT
RSRRRFSTQQSGGTREGLALEGWSGSARGAAREQREVGGAGFSWDSGRAP
AARAAPSTAPARRYIRAFTFGSLTSRSRRGSTGVTRSFDERGERRGNALP
RQAPYLAPPDWTGTPPRSGPQRVRCPSRATTVTEESTPTVTTAAASAASL
ASSSAASASASPVGGGGGGGGDGSGRFFAAAAAAAAAAAASSSPSSSATV
LAPTSSSPPSLRTTAVSAAASTRGTASTVSMPSSSVSTSSPEEERL
back to top