prot_E-siliculosus-1a_F_contig1298.1805.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1298.1805.1
Unique Nameprot_E-siliculosus-1a_F_contig1298.1805.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length245
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1298.1805.1 vs. uniprot
Match: D7FJN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN7_ECTSI)

HSP 1 Score: 499 bits (1286), Expect = 6.000e-179
Identity = 234/244 (95.90%), Postives = 239/244 (97.95%), Query Frame = 0
Query:    1 MTAVTTLADCWLKALLTLVALALSANVIVGPSVRWRPVFVSGLLVAIVICEYYYLFFAMVKVPTDWASMRGVSLERWDCLQSTKGGKRADGSGSSFDINPCFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVDLYIKSTRDCTAAQGPSCSLGAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVLGEGPYCWKEPGSREVEPCSVCCTELEALYLNGTCY 244
            MTAVTTLA+CWLKALLTLVALALSANVIVGPSVRWRPVFVSGLLVAIVICEYYYLFFA+VKVPTDWAS RG S+ERWDCLQSTKGGKRAD SGSSFDINPCFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPV+LYIKSTRDCTAAQGPSCSL APCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFV+GEGPYCWKEPGSREVEPCSVCCTE EALYLNGTCY
Sbjct:    1 MTAVTTLAECWLKALLTLVALALSANVIVGPSVRWRPVFVSGLLVAIVICEYYYLFFAIVKVPTDWASRRGASIERWDCLQSTKGGKRADSSGSSFDINPCFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVNLYIKSTRDCTAAQGPSCSLAAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVIGEGPYCWKEPGSREVEPCSVCCTEPEALYLNGTCY 244          
BLAST of mRNA_E-siliculosus-1a_F_contig1298.1805.1 vs. uniprot
Match: A0A836CP84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP84_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.600e-41
Identity = 79/206 (38.35%), Postives = 114/206 (55.34%), Query Frame = 0
Query:   41 SGLLVAIVICEYYYLFFAMVKVPTDWASMRGVSLERWDCLQSTKGGKRADGSGSSFDINPCFCP--FGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVDLYIKSTRDCTAAQGPSCSLGAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVLGEGPYCWKEPGSREVEPCSVCCTE-LEALYLNGTC 243
            + LL   ++ ++ +++ A +K P  W       + RWDCLQS KGGK+  G  +  ++NPC C   F A C +L +G     + C  DGT  C D +   ++  + + RDC+A QG  CS  +PC PC    L+ +  A G DA          RCR CG+ N+G C F  GEGPYCW  PGS EV+PC++CC++  E + +NG C
Sbjct:   12 TWLLPVSLLLQFNFVWQAAMKPPPTWER----EVFRWDCLQSPKGGKQWAGDDARDEVNPCLCAPHFKAACHSLETGA---AAACRTDGTVRCRDKSGVKINRLLSAERDCSAGQGRVCSQRSPCLPCEPSKLQQWALA-GLDA---------PRCRRCGSSNAGNCRFREGEGPYCWVRPGSNEVQPCALCCSDPSELINVNGVC 200          
BLAST of mRNA_E-siliculosus-1a_F_contig1298.1805.1 vs. uniprot
Match: A0A7S2CU36_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU36_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.410e-28
Identity = 82/241 (34.02%), Postives = 105/241 (43.57%), Query Frame = 0
Query:   30 GPSVRWRPVFVSGLLVAIVICEYYYLFF-AMVKVPTDWASMRGVSLERWDCLQSTKGGKRADG---SGSSFDINPCFCPFGAFCKNLTSGEWVD---PSVCPKDGTALCWD-----------------INHTPVDLYIKST-------RDCTAAQGPSCSLGAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVLGEGPYCWKEP------GSREVEPCSVCCTE 233
            G   +WR  F   LL+ +V+ +YY +F  AM   P D     GV   RWDCLQSTKGGK +      GS   +NPC+C   A CK  +  +  +   P  CP      C +                      V  YI          RDC   Q   C+   PC+PC L+ +  +               GV+RC +C   N+G CNFV G GPYCW+ P      GSR+V PC  CCTE
Sbjct:  147 GVGSKWRSNFSGSLLLGMVVIQYYSVFMTAMQNYPYD-----GVEAYRWDCLQSTKGGKISRAMFYEGSERALNPCYCHANATCKYKSGVKEYNGSHPLGCPLTDEFTCLEQYAFQAFKTETXXXXXXXXXXKVWPYIAREALDEGFRRDCKKGQAARCTRQDPCSPCELEKVLAF---------------GVTRCETCSVFNNGDCNFVPGVGPYCWESPDYDERGGSRKVVPCKQCCTE 367          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1298.1805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJN7_ECTSI6.000e-17995.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CP84_9STRA3.600e-4138.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CU36_9STRA1.410e-2834.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..244
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availableTMHMMTMhelixcoord: 38..60
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1298contigE-siliculosus-1a_F_contig1298:20601..29833 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1298.1805.1mRNA_E-siliculosus-1a_F_contig1298.1805.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1298 20549..30701 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1298.1805.1 ID=prot_E-siliculosus-1a_F_contig1298.1805.1|Name=mRNA_E-siliculosus-1a_F_contig1298.1805.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=245bp
MTAVTTLADCWLKALLTLVALALSANVIVGPSVRWRPVFVSGLLVAIVIC
EYYYLFFAMVKVPTDWASMRGVSLERWDCLQSTKGGKRADGSGSSFDINP
CFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVDLYIKSTRDCT
AAQGPSCSLGAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAG
NSGACNFVLGEGPYCWKEPGSREVEPCSVCCTELEALYLNGTCY*
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