prot_E-siliculosus-1a_F_contig1285.1744.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1285.1744.1
Unique Nameprot_E-siliculosus-1a_F_contig1285.1744.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length75
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: D7FNU5_ECTSI (Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU5_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 9.360e-45
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query:    1 MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC
Sbjct:   27 MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 100          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: L8GYQ9_ACACA (Elongin-C n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYQ9_ACACA)

HSP 1 Score: 109 bits (272), Expect = 1.800e-29
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 0
Query:    1 MVSGTIKAMLSGG--FGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLD 73
            MVSGTIK+MLSG   F E A G+++F EISTPILEKVIQ+ YYK+RYTNS T IPEF IEPE+ALELLMAANFLD
Sbjct:   28 MVSGTIKSMLSGPGTFTEQAMGEINFREISTPILEKVIQYFYYKLRYTNSTTEIPEFPIEPEVALELLMAANFLD 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: A0A7S2XYA0_9STRA (Elongin-C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA0_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.100e-28
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    1 MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            MVSGTI AMLSG F E+  G+V F EIS+ ILEK+IQ+ YYKVRYTNS +RIP+F IEPE+ALELLMAANFLDC
Sbjct:   33 MVSGTINAMLSGQFAESR-GEVTFPEISSAILEKIIQYCYYKVRYTNSTSRIPDFPIEPEIALELLMAANFLDC 105          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: A0A6U1KLA4_9STRA (Elongin-C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KLA4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.220e-28
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0
Query:    3 SGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            SGTIKAMLSG F E+ SG++ F EISTPILEKVIQ+ YYK  Y NS  RIPEF IEPE+ALELLMAANFLDC
Sbjct:   48 SGTIKAMLSGSFTES-SGEIKFPEISTPILEKVIQYFYYKASYKNSQVRIPEFAIEPEVALELLMAANFLDC 118          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: A0A1V9Z8H2_9STRA (Elongin-C n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z8H2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.990e-28
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    1 MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            +VSGTIKAMLSG F E+  G+V F +IS PILEKVIQ++YYK RY+NS  RIP+F IEPE+ALELLMAAN+LDC
Sbjct:   29 LVSGTIKAMLSGHFSES-KGEVRFPDISAPILEKVIQYMYYKKRYSNSNARIPDFGIEPEMALELLMAANYLDC 101          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: F0YER3_AURAN (Elongin-C (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER3_AURAN)

HSP 1 Score: 105 bits (262), Expect = 4.370e-28
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0
Query:    3 SGTIKAMLSGGFGEA----ASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            SGTIKAMLSG  G      +SG++ F EISTPILEKVIQ+ YYK+RYTNS  RIPEF I+PE+ALELLMA+NFLDC
Sbjct:   17 SGTIKAMLSGPRGPRQFTESSGEIKFPEISTPILEKVIQYFYYKLRYTNSQVRIPEFQIDPEMALELLMASNFLDC 92          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: A0A6G0WB49_9STRA (Elongin-C n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB49_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.210e-27
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    1 MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            MVSGTIKAML+G F E+  G+V F +IS PILEK+IQ+ Y+KVRY+NS  R+P+F IEPE+ALELLMAAN+LDC
Sbjct:   31 MVSGTIKAMLTGHFSES-KGEVRFPDISAPILEKIIQYFYFKVRYSNSNARLPDFTIEPEIALELLMAANYLDC 103          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: A0A1W0A8X8_9STRA (Elongin-C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8X8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.380e-27
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    1 MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            +VSGTIKAML G F E+  G++ F +IS PILEKVIQ++YYK RY+NS  RIPEF+IEPE++LELLMAAN+L+C
Sbjct:   33 LVSGTIKAMLLGQFSES-KGEIRFPDISAPILEKVIQYLYYKKRYSNSNARIPEFNIEPEMSLELLMAANYLEC 105          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: K8Z122_NANGC (Elongin-C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z122_NANGC)

HSP 1 Score: 102 bits (254), Expect = 8.840e-27
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 0
Query:    2 VSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 74
            VS TI+AML+G F E+  G+++F EIST ILEKVIQ++YYKVRYTNS  ++P+F +EPE+ALELLMAANFLDC
Sbjct:   28 VSKTIEAMLAGNFAES-KGEINFPEISTNILEKVIQYLYYKVRYTNSPQKVPDFKMEPEIALELLMAANFLDC 99          
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Match: A0A1Y1IDM0_KLENI (Elongin-C n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDM0_KLENI)

HSP 1 Score: 100 bits (249), Expect = 5.880e-26
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 0
Query:    1 MVSGTIKAMLS--GGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSAT--RIPEFHIEPELALELLMAANFLDC 74
            M+S T+K MLS  GGF E   G+V F EISTPILEK+ QF YYK+RYTNSA    +PEF IEPE+A+ELLMA+NFLDC
Sbjct:   27 MISNTLKNMLSSSGGFQETELGEVRFPEISTPILEKLCQFFYYKLRYTNSAAVKNVPEFKIEPEIAIELLMASNFLDC 104          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1285.1744.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU5_ECTSI9.360e-45100.00Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN... [more]
L8GYQ9_ACACA1.800e-2976.00Elongin-C n=1 Tax=Acanthamoeba castellanii str. Ne... [more]
A0A7S2XYA0_9STRA1.100e-2874.32Elongin-C n=1 Tax=Fibrocapsa japonica TaxID=94617 ... [more]
A0A6U1KLA4_9STRA3.220e-2876.39Elongin-C n=1 Tax=Pelagomonas calceolata TaxID=356... [more]
A0A1V9Z8H2_9STRA3.990e-2871.62Elongin-C n=3 Tax=Saprolegniaceae TaxID=4764 RepID... [more]
F0YER3_AURAN4.370e-2871.05Elongin-C (Fragment) n=1 Tax=Aureococcus anophagef... [more]
A0A6G0WB49_9STRA1.210e-2768.92Elongin-C n=1 Tax=Aphanomyces euteiches TaxID=1008... [more]
A0A1W0A8X8_9STRA7.380e-2767.57Elongin-C n=1 Tax=Thraustotheca clavata TaxID=7455... [more]
K8Z122_NANGC8.840e-2768.49Elongin-C n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A1Y1IDM0_KLENI5.880e-2666.67Elongin-C n=1 Tax=Klebsormidium nitens TaxID=10523... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 1..74
e-value: 0.0094
score: 2.4
NoneNo IPR availableGENE3D3.30.710.10coord: 1..74
e-value: 5.6E-21
score: 76.9
NoneNo IPR availablePANTHERPTHR20648:SF0ELONGIN-Ccoord: 1..74
IPR039948Elongin-CPANTHERPTHR20648FAMILY NOT NAMEDcoord: 1..74
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 1..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1285contigE-siliculosus-1a_F_contig1285:32640..33656 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1285.1744.1mRNA_E-siliculosus-1a_F_contig1285.1744.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1285 31508..33719 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1285.1744.1 ID=prot_E-siliculosus-1a_F_contig1285.1744.1|Name=mRNA_E-siliculosus-1a_F_contig1285.1744.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSAT
RIPEFHIEPELALELLMAANFLDC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011333SKP1/BTB/POZ_sf
IPR039948ELC1
IPR001232SKP1-like