prot_E-siliculosus-1a_F_contig1260.1613.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1260.1613.1
Unique Nameprot_E-siliculosus-1a_F_contig1260.1613.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length632
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1260.1613.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 1107 bits (2864), Expect = 0.000e+0
Identity = 571/633 (90.21%), Postives = 586/633 (92.58%), Query Frame = 0 
Query:    1 MWQDFSAHNTQRGDVTAVVWGAPGAPPATGESTGTVRRSSAAGAVGAEALTRGRRADTPFVQQCDLVFPLPDQDGDSDGHDHGDMQEKQQELREMEKRAKGFVIRALGKTFYYRARGPLSVLLREPFLGSYVLKGGFSALALNAPSDHGNSFAILPGGVLALSLDRESFQASMSGSR--LPGEAAPTRPNGKGKRAGAGAGSTGGSVGVLGGSAGGPDRYVSTVDLSAKSFRPGKPLHDRVLSCLSSCRWGSGDDGAAVDMVVYWCGSGGVGQGSGEGGKVAEPGSSGTSEASGQAPEGCGQGAAAVGGSRKGGCVEGEREGEQSQQCCRDITFPPGFSAERVDLAPDIRFFREACCPDLDFVGQGLAATAPTPAQHARRKGRKGIEAKAFNSTPTAENLVDDGDDGGSDDHFTDSRHPRLPPPHPSPPESAKCLLVLDMFEWLGAVSCGLDAAVRRSPSPPEPYLSKFETPRHLRYRSDRVVCRARLRGFLPPVAVSRFVDAAGSAAAAVVAVASAEDSAADGRQHQEPTQLLPVGRMVRDQGQQRPDGCSWGAVTSWPFRDAPRAYPGADAPCAGGQRSKRGGRKGRGXGGGAERPAKEWPVGGHGVYTVVACPGETAVAFVSAKCPGPGW 631
            MWQDFSAHNTQRGDVTAVVWGAPGA PATGEST TVR SSAAGAV AEALTRGRRADTPF+QQCDLVFPLPDQDG+SDGHDHGD QE+QQ+  EME+RAK FV+RALGKTFYYRARGPLSVLLRE FL SYVLKGGFSALALNAPSDHGNSFAILPGGVL LSLDRESFQAS+SG R  LPGEAA TRPNGKGKRAGAGAGSTGGSVGVLGGSAGGPDRYVS VDLSAKSFRPGKPLHDRVLSCLSSCRWGSGDDGAAVDMVV+WCGSGGVGQGSGEGG++AE  SSGTSEASGQAPEGCGQGAAAVG   KG C EG++EG+QSQQCCRDITFPPGFSAERVDL PDIRFFREACCPDLDFVGQGLAATAPT  Q ARRKGRKGIEA AFNST TAENLVD  DDGGSDDHFTD RHPRLPPP  S PESAKCLLVLDMFEWLGAVSCGLDAAVRRSPSPPEPYLSKFETPRHLRYR DRVVCRARLRGFLPPVAVSRFVDAAGSAAA V A+ASAEDSAADGRQH E  QLLPV R+VRDQGQQRPDGCSWGAVTSWPFRDAPRAYPGADAPCAGGQRSKRG RKGRG GG  ER AKEWPVGGHGVYTVVACPGETAVAFVSAKCPGPGW
Sbjct:    1 MWQDFSAHNTQRGDVTAVVWGAPGARPATGESTATVRPSSAAGAVDAEALTRGRRADTPFIQQCDLVFPLPDQDGESDGHDHGDTQERQQKRLEMEERAKAFVVRALGKTFYYRARGPLSVLLRERFLDSYVLKGGFSALALNAPSDHGNSFAILPGGVLVLSLDRESFQASISGFRICLPGEAAATRPNGKGKRAGAGAGSTGGSVGVLGGSAGGPDRYVSAVDLSAKSFRPGKPLHDRVLSCLSSCRWGSGDDGAAVDMVVHWCGSGGVGQGSGEGGELAEAESSGTSEASGQAPEGCGQGAAAVGRRPKGECAEGKQEGQQSQQCCRDITFPPGFSAERVDLTPDIRFFREACCPDLDFVGQGLAATAPTTVQRARRKGRKGIEATAFNSTSTAENLVDGSDDGGSDDHFTDRRHPRLPPPVASQPESAKCLLVLDMFEWLGAVSCGLDAAVRRSPSPPEPYLSKFETPRHLRYRRDRVVCRARLRGFLPPVAVSRFVDAAGSAAAGVAALASAEDSAADGRQHYESPQLLPVRRVVRDQGQQRPDGCSWGAVTSWPFRDAPRAYPGADAPCAGGQRSKRGARKGRGGGGSEERCAKEWPVGGHGVYTVVACPGETAVAFVSAKCPGPGW 633
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BLAST of mRNA_E-siliculosus-1a_F_contig1260.1613.1 vs. uniprot
Match: A0A835ZFG0_9STRA (Ribonuclease P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.940e-9
Identity = 47/119 (39.50%), Postives = 60/119 (50.42%), Query Frame = 0 
Query:  149 GNSFAILPGGVLALSLDRESFQASMSGSRLPGEAAPTRPNGKGKRAGAGAGSTGGSVGVLGGSAGGPDRYVSTVDLSAKSFRPGKPLHDRVLSCLSSCRWGSGDDGAAVDMVVYWCGSG 267
            G +FA+LPGG L  SLDRE+FQ       LP +A   RP    +R        GG           P RY  + DL +KSFRPGKPLHDR++ CL+         GA  + ++ W G G
Sbjct:   19 GATFAVLPGGKLVYSLDREAFQTL----GLPAKA--VRPASTSRR-------PGGDK---------PRRYFGSADLHSKSFRPGKPLHDRLVQCLAK--------GARAETMLVWDGGG 107
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1260.1613.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE0.000e+090.21Cyclic nucleotide-binding domain-containing protei... [more]
A0A835ZFG0_9STRA5.940e-939.50Ribonuclease P n=1 Tax=Tribonema minus TaxID=30337... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..105
IPR013893Ribonuclease P, Rpp40PFAMPF08584Ribonuc_P_40coord: 122..246
e-value: 2.5E-11
score: 43.4
coord: 432..563
e-value: 1.8E-6
score: 27.5
IPR013893Ribonuclease P, Rpp40PANTHERPTHR15396FAMILY NOT NAMEDcoord: 103..578
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 108..170
score: 7.033

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1260contigE-siliculosus-1a_F_contig1260:23466..26022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1260.1613.1mRNA_E-siliculosus-1a_F_contig1260.1613.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1260 23344..26768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1260.1613.1 ID=prot_E-siliculosus-1a_F_contig1260.1613.1|Name=mRNA_E-siliculosus-1a_F_contig1260.1613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=632bp
MWQDFSAHNTQRGDVTAVVWGAPGAPPATGESTGTVRRSSAAGAVGAEAL
TRGRRADTPFVQQCDLVFPLPDQDGDSDGHDHGDMQEKQQELREMEKRAK
GFVIRALGKTFYYRARGPLSVLLREPFLGSYVLKGGFSALALNAPSDHGN
SFAILPGGVLALSLDRESFQASMSGSRLPGEAAPTRPNGKGKRAGAGAGS
TGGSVGVLGGSAGGPDRYVSTVDLSAKSFRPGKPLHDRVLSCLSSCRWGS
GDDGAAVDMVVYWCGSGGVGQGSGEGGKVAEPGSSGTSEASGQAPEGCGQ
GAAAVGGSRKGGCVEGEREGEQSQQCCRDITFPPGFSAERVDLAPDIRFF
REACCPDLDFVGQGLAATAPTPAQHARRKGRKGIEAKAFNSTPTAENLVD
DGDDGGSDDHFTDSRHPRLPPPHPSPPESAKCLLVLDMFEWLGAVSCGLD
AAVRRSPSPPEPYLSKFETPRHLRYRSDRVVCRARLRGFLPPVAVSRFVD
AAGSAAAAVVAVASAEDSAADGRQHQEPTQLLPVGRMVRDQGQQRPDGCS
WGAVTSWPFRDAPRAYPGADAPCAGGQRSKRGGRKGRGGGGGAERPAKEW
PVGGHGVYTVVACPGETAVAFVSAKCPGPGW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR013893RNase_P_Rpp40