prot_E-siliculosus-1a_F_contig125.1553.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig125.1553.1
Unique Nameprot_E-siliculosus-1a_F_contig125.1553.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length396
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig125.1553.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 5.170e-48
Identity = 123/290 (42.41%), Postives = 158/290 (54.48%), Query Frame = 0 
Query:  109 RVRGAGATEAGDRQPWIVRVLGHITNFWHVAVPVVDDVTDVLLLTSTAGASSPLWWICLIALVVADVERFWLLFALCVTVPLLPLLWCWDWIASTHWRTAAFFFARLNC----------------RGDAPEGTFVGRLLDSFLWVLVGSRSRCSPFWRMLGMSLDPKVEEADHAGVGFGAIDKWVEWHPFRWVGRV--SFGSGFVLKGESEGVSRRAMVMIRAVGETLVVDSLFLALSVMSGGWDDDLSGVAGISALFSVLELVTELQYYVAEAGASM-----EPVSSSI 375
            +VRGAG  E     P  V V+  +   WH  +P+ DDVTDV+LL  T      LWW C  A V+ADVER  +L    VT+ LL LLW    +  T       F   L C                R   P       +LD F+WV+VGSRS+ S   R+ GM+    V+  + +G G   ID+ V+ HP+  +GR   S+  G  L G  E  +RR+ VM+RAVGETLVVDSLFLALS+ S  W+D +S +   S +FSVLEL+TELQYYV+EA A M     EP S+SI
Sbjct:  158 KVRGAGRVE-----PLAVSVVDFLVALWHFLIPIFDDVTDVILLIGTFEDRGGLWWACCGAFVLADVERVLILL---VTL-LLVLLWVPFALLGTDESRGERFEVALKCLNGCHDLKLETVWGGSRFVVPRSALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEA-TRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVS-IGIFSLIFSVLELLTELQYYVSEARADMVTGGEEPTSTSI 436
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BLAST of mRNA_E-siliculosus-1a_F_contig125.1553.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.040e-13
Identity = 64/172 (37.21%), Postives = 78/172 (45.35%), Query Frame = 0 
Query:  264 DHAGVGFGA-IDKWVEWHPFRWVGRVSFG------SGFVLKG--------ESEGVSRR------------------------------------------------AMVMIRAVGETLVVDSLFLALSVMS-GGWDDDLSGVAGISALFSVLELVTELQYYVAEAGASMEPV 371
            + A   FGA ID WV  HPF W+G   FG      SG   +G         +EG                                                    A VM+R+VGETLVVD LFLALS +S GGWD  L+G+AGISA+FS L+L+TEL+YYV  A A +E V
Sbjct:  206 EQAAGDFGAVIDSWVSCHPFSWLGNCVFGRVRPSDSGCARRGCCCAGRRNLAEGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASAVLERV 377
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig125.1553.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE5.170e-4842.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME9_9PHAE1.040e-1337.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..98
e-value: 4.5E-27
score: 96.4
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 3..89
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 3..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 198..395
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 173..177
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 149..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..148
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..88
NoneNo IPR availableTMHMMTMhelixcoord: 179..201
NoneNo IPR availableTMHMMTMhelixcoord: 150..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig125contigE-siliculosus-1a_F_contig125:26336..35013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig125.1553.1mRNA_E-siliculosus-1a_F_contig125.1553.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig125 26144..48529 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig125.1553.1 ID=prot_E-siliculosus-1a_F_contig125.1553.1|Name=mRNA_E-siliculosus-1a_F_contig125.1553.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=396bp
MYLCLDENQLTGSIPTELGALTKLEGLFLGKNQLTGPIPKELGALTEISS
LSLELNNLTGSIPKELGALASLVSLSLGDNQLTGPLPPRSYGRDMQDWVD
IPDENEKARVRGAGATEAGDRQPWIVRVLGHITNFWHVAVPVVDDVTDVL
LLTSTAGASSPLWWICLIALVVADVERFWLLFALCVTVPLLPLLWCWDWI
ASTHWRTAAFFFARLNCRGDAPEGTFVGRLLDSFLWVLVGSRSRCSPFWR
MLGMSLDPKVEEADHAGVGFGAIDKWVEWHPFRWVGRVSFGSGFVLKGES
EGVSRRAMVMIRAVGETLVVDSLFLALSVMSGGWDDDLSGVAGISALFSV
LELVTELQYYVAEAGASMEPVSSSITAISGQGAVSDPSTAGAHAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf