prot_E-siliculosus-1a_F_contig1216.1373.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1216.1373.1
Unique Nameprot_E-siliculosus-1a_F_contig1216.1373.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length304
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1216.1373.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 485 bits (1248), Expect = 3.800e-171
Identity = 302/306 (98.69%), Postives = 303/306 (99.02%), Query Frame = 0 
Query:    1 MAEFAAVPGTPMKPSKGEDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPP---SAVPANTAGGTFGISESDTSAGAPPTKPV 303
            MAEFAAVPGTPMKPSKG+DLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPP   SAVPANTAGGTFGISESDTSAGAPPTKPV
Sbjct:    1 MAEFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVPANTAGGTFGISESDTSAGAPPTKPV 306
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BLAST of mRNA_E-siliculosus-1a_F_contig1216.1373.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.950e-31
Identity = 72/124 (58.06%), Postives = 94/124 (75.81%), Query Frame = 0 
Query:   24 VTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIF 147
            VT+ +A RS+LVQGLP+LD++ TE S+V+VFS YG +S+LLLQT   S+TQRA++VFA+ AGAT+ALQ N RDILGA+CSV L+S++   N+  DR NV     A G + G T TTAEWI+ IF
Sbjct:  154 VTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNVHWMGEAEGALSGGTPTTAEWIQLIF 277
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1373.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI3.800e-17198.69RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE1.950e-3158.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 32..105
e-value: 0.0028
score: 26.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 41..100
e-value: 2.6E-6
score: 27.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 31..109
score: 11.025
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 20..112
e-value: 4.2E-8
score: 35.2
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 28..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1216contigE-siliculosus-1a_F_contig1216:8430..15067 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1216.1373.1mRNA_E-siliculosus-1a_F_contig1216.1373.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1216 8322..16163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1216.1373.1 ID=prot_E-siliculosus-1a_F_contig1216.1373.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1373.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=304bp
MAEFAAVPGTPMKPSKGEDLEHPVTDLEAVRSILVQGLPLLDQELTESSI
VQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGA
NCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQG
MVYTRLFDEKLGVSSTAKSIAAKVQTQVEQIDEKHNVSGKLAAVAFTAQA
KVQEVNTKLKVSETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSL
VKSVSGLAHQAMGQPQEMAGPVPPSAVPANTAGGTFGISESDTSAGAPPT
KPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom