prot_E-siliculosus-1a_F_contig1177.1143.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1177.1143.1
Unique Nameprot_E-siliculosus-1a_F_contig1177.1143.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length347
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1177.1143.1 vs. uniprot
Match: D8LGN7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN7_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 1.700e-145
Identity = 272/346 (78.61%), Postives = 274/346 (79.19%), Query Frame = 0 
Query:    1 ASIVFTSIAESSDLSQCSGFTTIPVGIFKGLPALEKLMVGGVEIRTLEVGVFDDVAGSLRALHVQFCPELTSLPADLFRGLSGLTYLKIXXXXXXXXXXXXXXXDTTEVTELDLSGNGLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQNMWLHGDGMFNMQCLPDRSTVGEKFENLLGLGVLSMPLLSSLRCVAGAFAAFTTASSSTGDANDRSLTTECTPAKAVSCPKQTTCRPGTRGYTCEARTAPGPTPHRKPKPGGETCGVFTDIEGIVGKTRKGTACCPARQPRASSKGPPERRPRRGRPRRSPSQVVANAASTAPPASWEATTTAPSVAR 346
            ASI FTSIAESSDLSQCSGFTTIP GIFK LPALEKLMVGGVEIRTLEVGVFDDVAGSLRALHVQFCPELT LPADLFRGLSGLTYLKI               DTTEVTELDLSGNGLT+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LQNMWLHGDGMFNMQCLPDR                                   TASSSTGDANDR LTTECTPAKAV CPKQT+C PGTRGYTCEARTAPGPTPHRK KPGGETCGVFTDIEG VGKT KGTACCPA   RASSKGP ERRPRRGR  RSP QVVANAAST PPASWEATT APSVAR
Sbjct:    8 ASIAFTSIAESSDLSQCSGFTTIPAGIFKDLPALEKLMVGGVEIRTLEVGVFDDVAGSLRALHVQFCPELTWLPADLFRGLSGLTYLKIQNIPKLRSIPVGLFQDTTEVTELDLSGNGLTALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQNMWLHGDGMFNMQCLPDR-----------------------------------TASSSTGDANDRLLTTECTPAKAVFCPKQTSCCPGTRGYTCEARTAPGPTPHRKSKPGGETCGVFTDIEGFVGKTAKGTACCPAPLLRASSKGPSERRPRRGR--RSPLQVVANAASTPPPASWEATTAAPSVAR 316
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1177.1143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGN7_ECTSI1.700e-14578.61Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 31..54
e-value: 23.0
score: 10.3
coord: 106..129
e-value: 11.0
score: 13.0
coord: 130..153
e-value: 4.9
score: 15.8
coord: 81..105
e-value: 110.0
score: 4.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 6..198
e-value: 1.8E-32
score: 114.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 108..165
e-value: 3.7E-10
score: 39.4
NoneNo IPR availablePANTHERPTHR45842FAMILY NOT NAMEDcoord: 70..167
coord: 19..117
NoneNo IPR availablePANTHERPTHR45842:SF12INSULIN LIKE GROWTH FACTOR BINDING PROTEIN ACID LABILE SUBUNITcoord: 19..117
NoneNo IPR availablePANTHERPTHR45842:SF12INSULIN LIKE GROWTH FACTOR BINDING PROTEIN ACID LABILE SUBUNITcoord: 70..167
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 13..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1177contigE-siliculosus-1a_F_contig1177:19857..30688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1177.1143.1mRNA_E-siliculosus-1a_F_contig1177.1143.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1177 19857..30688 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1177.1143.1 ID=prot_E-siliculosus-1a_F_contig1177.1143.1|Name=mRNA_E-siliculosus-1a_F_contig1177.1143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=347bp
ASIVFTSIAESSDLSQCSGFTTIPVGIFKGLPALEKLMVGGVEIRTLEVG
VFDDVAGSLRALHVQFCPELTSLPADLFRGLSGLTYLKIQNVPKLRSIPV
GLFQDTTEVTELDLSGNGLTSLQLGTFHGLTKVITLPLQSNSLTTLPASI
FEPLTSLQNMWLHGDGMFNMQCLPDRSTVGEKFENLLGLGVLSMPLLSSL
RCVAGAFAAFTTASSSTGDANDRSLTTECTPAKAVSCPKQTTCRPGTRGY
TCEARTAPGPTPHRKPKPGGETCGVFTDIEGIVGKTRKGTACCPARQPRA
SSKGPPERRPRRGRPRRSPSQVVANAASTAPPASWEATTTAPSVAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR003591Leu-rich_rpt_typical-subtyp