prot_E-siliculosus-1a_F_contig1126.837.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1126.837.1
Unique Nameprot_E-siliculosus-1a_F_contig1126.837.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length749
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1126.837.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 845 bits (2183), Expect = 5.240e-301
Identity = 563/657 (85.69%), Postives = 569/657 (86.61%), Query Frame = 0 
Query:  102 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXXXXAKLFQPVFNFDEHQPYLVGDGGGYDGTDNXXXXXXXXXXXX-SQDMPMIVPHDPILDAIFTPCRAVLPSTHHFHHPAEAAPVAVTCGLVRVPSGGQFGAGKKKNEIAAFRPELLYNIPPXXXXXEVSYAAPLQVPMAPLRQPSGGRGLYSSSPARGRVMIQSAERSPAAAAARLVAAATYLNKEENSNNIPTEFSPSGCGGGGAMYTAATT-PLTGADAHSSREYDDERHAFLRRQEAALAAGAQYITGGVIVEPAARSAAVDWISRLHTAAPAASGGSEPLSLETLFLAVNLMDRFLATPQGAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDTQAASLWGVAAXXXXXXXXXXXXXXXXXXXXXXXXXX--------DFFGVLGAGDSLGLXXXXXXXXXXXXXXXNADVRAARKELAAMEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAXXXXXXXXXXXXXXXDWAGAAFPEHAGNSLFGAGGGHPAIAAL 748
            MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXX  AKLFQPVFNFDEHQPYLVGDGGGY     XXXXXXXXXXXX SQDMPMIVPHDPILDAIFTPCRAVLPSTHH+HHPAEAAPVAVTCGLVRVPSGG+FGAGKK NEIAAFRPELLYNIPPXXXX EVSYAA LQVPMAPLRQPSGGR LYSSSP RGRVMIQSAERSPAAAAARLVA ATYLNKEENSNNIP EFSPS               PLTGADAHSSREYDDERHAFLRRQEAALAAGA+YITGGV+V+PAARSAAVDW+SRLH                                 GAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQD           XXXXXXXXXXXXXXXXXXXXXXXXXX        DFFGVLGAGDSLGLXXXXXXXXXXXXXX NADVRAARKELAA EMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPA XXXXXXXXXXXX  DWAGAAFPEHA NSLFGAGGGHPAIAAL
Sbjct:    1 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXXA-AKLFQPVFNFDEHQPYLVGDGGGYXXXXXXXXXXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPAEAAPVAVTCGLVRVPSGGRFGAGKK-NEIAAFRPELLYNIPPXXXX-EVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSAERSPAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXXXXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGVVVDPAARSAAVDWLSRLH---------------------------------GAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXXXXXXX-NADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXX--DWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1126.837.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRC5_ECTSI5.240e-30185.69Cyclin_C domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 589..683
e-value: 5.1
score: 3.5
coord: 415..576
e-value: 0.076
score: 22.1
IPR004367Cyclin, C-terminal domainSMARTSM01332Cyclin_C_2coord: 585..705
e-value: 8.7E-12
score: 55.2
IPR004367Cyclin, C-terminal domainPFAMPF02984Cyclin_Ccoord: 585..684
e-value: 2.6E-8
score: 33.9
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 383..582
e-value: 6.8E-10
score: 38.8
NoneNo IPR availableGENE3D1.10.472.10coord: 579..692
e-value: 4.0E-13
score: 51.6
IPR039361CyclinPANTHERPTHR10177CYCLINEcoord: 379..683
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 568..684
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 374..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1126contigE-siliculosus-1a_F_contig1126:20209..22455 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1126.837.1mRNA_E-siliculosus-1a_F_contig1126.837.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1126 19993..22587 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1126.837.1 ID=prot_E-siliculosus-1a_F_contig1126.837.1|Name=mRNA_E-siliculosus-1a_F_contig1126.837.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=749bp
MSLLLLEDAARYIDSDNTNVSAGMKASATWVPASWGGQQQQAAAASASAA
ARDGDELFFGGGGGGSSNAESDEMQQQYGSSSRGGELRRADSIVIDDSDE
EMEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEAAASSSSSGSSRG
GGGAAKLFQPVFNFDEHQPYLVGDGGGYDGTDNHHHRPQQQQQQQSQDMP
MIVPHDPILDAIFTPCRAVLPSTHHFHHPAEAAPVAVTCGLVRVPSGGQF
GAGKKKNEIAAFRPELLYNIPPPPPPPEVSYAAPLQVPMAPLRQPSGGRG
LYSSSPARGRVMIQSAERSPAAAAARLVAAATYLNKEENSNNIPTEFSPS
GCGGGGAMYTAATTPLTGADAHSSREYDDERHAFLRRQEAALAAGAQYIT
GGVIVEPAARSAAVDWISRLHTAAPAASGGSEPLSLETLFLAVNLMDRFL
ATPQGAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDTQAASLWGVA
AASISSSTSSSQPPLHLGGGADSGGGGDFFGVLGAGDSLGLGGGSGSGGG
GGGGGGNADVRAARKELAAMEMQVASALGFRLTVPTSLSFLGVFLRRAEG
LGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCV
TTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFAS
CSSPAAAGAGGEGGGGGGGGDWAGAAFPEHAGNSLFGAGGGHPAIAAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036915Cyclin-like_sf
IPR039361Cyclin
IPR006671Cyclin_N
IPR004367Cyclin_C-dom
IPR013763Cyclin-like