prot_E-siliculosus-1a_F_contig112.801.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig112.801.1
Unique Nameprot_E-siliculosus-1a_F_contig112.801.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length215
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig112.801.1 vs. uniprot
Match: D8LMD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD0_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 9.700e-92
Identity = 172/214 (80.37%), Postives = 176/214 (82.24%), Query Frame = 0 
Query:    1 MHLSTIATRAIPRSTGVQLVWNIAGGCGVQAISLVRSSTRDSTVVGEKGCLWTLTFAAGSIPASFMVTIGATRGRSRRRATPLPPCSSRSGCAGGDDGGDASREVLLLSPRGCGDSEDISGDAGGGGTVDGRAEVADXXXXXXXXXXXXXXXXTSVGVFPSRNSLPVAAGVEAIVLLLQVLPPSLHGERFPLALPNLAARFRTLMPIFRSSLPL 214
            MHLSTIATRA+PRSTG QLVWNIA GCGVQAISLV SSTRDSTVVGEKGCLW LTFAAGS PA  MV IGATRGRSRR ATPLP  SSR            S EVLLLS     DS DISGDAGGGG VD RAEVAD  XXXXXXXXXXXXX TSVG+FPSR SL  AAGVEAIVLLLQVLPPSLHG+RFPLALPNLAARFRTLMP+FRSSLPL
Sbjct:    1 MHLSTIATRAVPRSTGEQLVWNIAEGCGVQAISLVSSSTRDSTVVGEKGCLWILTFAAGSTPAPLMVKIGATRGRSRRLATPLPRWSSRXXXXXXXXXXXXSGEVLLLSRTVREDSGDISGDAGGGGAVDCRAEVADDGXXXXXXXXXXXXX-TSVGLFPSRISLSAAAGVEAIVLLLQVLPPSLHGKRFPLALPNLAARFRTLMPVFRSSLPL 213
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig112.801.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMD0_ECTSI9.700e-9280.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..214
NoneNo IPR availableTMHMMTMhelixcoord: 49..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig112contigE-siliculosus-1a_F_contig112:53713..67093 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig112.801.1mRNA_E-siliculosus-1a_F_contig112.801.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig112 53524..67093 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig112.801.1 ID=prot_E-siliculosus-1a_F_contig112.801.1|Name=mRNA_E-siliculosus-1a_F_contig112.801.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=215bp
MHLSTIATRAIPRSTGVQLVWNIAGGCGVQAISLVRSSTRDSTVVGEKGC
LWTLTFAAGSIPASFMVTIGATRGRSRRRATPLPPCSSRSGCAGGDDGGD
ASREVLLLSPRGCGDSEDISGDAGGGGTVDGRAEVADDGGHTTVVLLLPP
PPTTSVGVFPSRNSLPVAAGVEAIVLLLQVLPPSLHGERFPLALPNLAAR
FRTLMPIFRSSLPL*
back to top