prot_E-siliculosus-1a_F_contig11171.785.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig11171.785.1
Unique Nameprot_E-siliculosus-1a_F_contig11171.785.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length148
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: UPI00166D61E0 (RNA polymerase sigma factor n=2 Tax=Pseudomonas matsuisoli TaxID=1515666 RepID=UPI00166D61E0)

HSP 1 Score: 122 bits (305), Expect = 2.800e-32
Identity = 66/144 (45.83%), Postives = 95/144 (65.97%), Query Frame = 0
Query:    2 DADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLREQGH 145
            DADDI+Q  YLEAW++R+ ++G +RPETW+CGIA N++R ++++        + D++   E        PV   D S Q E+ QLL   + AI++LP +MR T++  +ET+GSY +TA RLG+ VGTVRSRLSRAR  L+   H
Sbjct:   42 DADDILQLTYLEAWRNRHKFDGRARPETWLCGIAHNLIRNHFRRHYARPPHSSHDELETHEQ-------PVEPSDLSIQFERHQLLDKTIEAIAELPRDMRETLWTAIETDGSYRDTAERLGVPVGTVRSRLSRAREQLKRSVH 178          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: J2MDC1_PSEFL (RNA polymerase sigma factor n=2 Tax=Pseudomonas TaxID=286 RepID=J2MDC1_PSEFL)

HSP 1 Score: 113 bits (283), Expect = 5.940e-29
Identity = 59/141 (41.84%), Postives = 91/141 (64.54%), Query Frame = 0
Query:    2 DADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLRE 142
            DADDI+Q  YLEAW+++  + GL++P+TW+CGIA+N++R ++++      +   D+    E+ + S GT     D S Q E  +LL   ++A+  LP +MR T++  V+TE SY + A RLG+ +GTVRSRL RAR  L+ 
Sbjct:   43 DADDIVQLTYLEAWRNQEKFKGLAKPDTWLCGIALNLIRNHFRRFYAQPPLSTFDE---SEFIESSDGT-----DLSQQCEHRRLLDRTLLAMDALPKDMRDTLWTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKR 175          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: A0A1H8JSV3_9PSED (RNA polymerase sigma factor n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1H8JSV3_9PSED)

HSP 1 Score: 111 bits (277), Expect = 4.880e-28
Identity = 57/141 (40.43%), Postives = 89/141 (63.12%), Query Frame = 0
Query:    2 DADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLRE 142
            DADDIIQ  YLEAW+++  + GL++P+TW+CGIA+N++R ++++      +   D+    + SD         +D S Q +  +LL   ++A+  LP +MR T++  V+TE SY + A RLG+ +GTVRSRL RAR  L+ 
Sbjct:   44 DADDIIQLTYLEAWRNQEKFKGLAKPDTWLCGIALNLIRNHFRRFYAQPPLSTFDESDFNQSSD--------DIDLSEQCDNRRLLDRTLLAMDALPKDMRETLWTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKR 176          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: UPI001905C568 (RNA polymerase sigma factor n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001905C568)

HSP 1 Score: 109 bits (273), Expect = 1.660e-27
Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = 0
Query:    2 DADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLRE 142
            DADD+IQ  YLEAW+++  + GL++P+TW+CGIA+N++R ++++      + + D+      SD         VD S Q +  +LL   ++A+  LP  MR T++  V+TE SY + A RLG+ +GTVRSRL RAR  L+ 
Sbjct:   38 DADDLIQLTYLEAWRNQEKFQGLAKPDTWLCGIALNLIRNHFRRYYAQPPLSSFDESEFHACSD--------DVDLSEQCDSRRLLDRTLLAMDALPQAMRETLWTAVDTESSYRDAAKRLGVPIGTVRSRLFRAREQLKR 170          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: UPI001FD69A6E (sigma-70 family RNA polymerase sigma factor n=3 Tax=Pseudomonas TaxID=286 RepID=UPI001FD69A6E)

HSP 1 Score: 106 bits (264), Expect = 1.770e-26
Identity = 56/141 (39.72%), Postives = 87/141 (61.70%), Query Frame = 0
Query:    2 DADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLRE 142
            DADDIIQ  YLEAW+++  + GL++ +TW+CGIA+N++R ++++      +   D+    E SD         +D S   +  +LL   ++A+  LP +MR T++  V+TE SY + A RLG+ +GTVRSRL RAR  L+ 
Sbjct:   10 DADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLIRNHFRRFYAQPPLSTFDESEFNESSD--------DIDLSELCDNRRLLDRTLIAMDALPKDMRDTLWTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKR 142          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: A0A0A7JTN4_9PSED (RNA polymerase sigma factor n=1 Tax=Pseudomonas parafulva TaxID=157782 RepID=A0A0A7JTN4_9PSED)

HSP 1 Score: 107 bits (266), Expect = 1.880e-26
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = 0
Query:    2 DADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRAR 137
            DADD+IQ  YLEAW+++  + GL++P+TW+CGIA+N++R ++++      +   D+    E SD         +D   Q +  +LL   + A+  LP EMR T+   V+TE SY + A RLG+ +GTVRSRL RAR
Sbjct:   38 DADDLIQLTYLEAWRNQEKFKGLAKPDTWLCGIALNLIRNHFRRYYAQPPLCAFDESECHEMSD--------DIDLGEQCDHHRLLDRTLTAMDALPKEMRETLLTAVDTESSYRDAAERLGVPIGTVRSRLFRAR 165          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: A0A125RM52_PSEFL (RNA polymerase sigma factor n=31 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A125RM52_PSEFL)

HSP 1 Score: 106 bits (264), Expect = 4.270e-26
Identity = 56/141 (39.72%), Postives = 87/141 (61.70%), Query Frame = 0
Query:    2 DADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLRE 142
            DADDIIQ  YLEAW+++  + GL++ +TW+CGIA+N++R ++++      +   D+    E SD         +D S   +  +LL   ++A+  LP +MR T++  V+TE SY + A RLG+ +GTVRSRL RAR  L+ 
Sbjct:   43 DADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLIRNHFRRFYAQPPLSTFDESEFNESSD--------DIDLSELCDNRRLLDRTLIAMDALPKDMRDTLWTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKR 175          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: A0A0D4ZZI0_ENTAG (Type III secretion system protein n=16 Tax=Enterobacterales TaxID=91347 RepID=A0A0D4ZZI0_ENTAG)

HSP 1 Score: 104 bits (260), Expect = 1.620e-25
Identity = 64/146 (43.84%), Postives = 91/146 (62.33%), Query Frame = 0
Query:    1 QDADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLREQGHA 146
            +DADDI+Q   LE   +R+ + G SRPETWV GIAVN++R YY+ K++    +N++D   E  +D+         DPS   E  QLLS  + ++  LP ++R  +   VE EGSY++ A +L I VGTVRSRLSRAR  L+ + +A
Sbjct:   44 EDADDILQMTCLEVLCNRHKFRGASRPETWVFGIAVNLIRNYYKSKKIHYLFDNLND---EVIADLLLDN-----DPSDLTENRQLLSHTLASLEILPKDVRVMLSILVEEEGSYQDIAQQLEIPVGTVRSRLSRARETLKGRIYA 181          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: A0A0J6GW54_PSETA (RNA polymerase sigma factor n=3 Tax=Pseudomonas TaxID=286 RepID=A0A0J6GW54_PSETA)

HSP 1 Score: 103 bits (257), Expect = 3.520e-25
Identity = 59/141 (41.84%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    1 QDADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLR 141
            +DADDI+Q   LEAW++R+ ++G +   TW+CGIA N++R ++  +RV+    +       E+ ++         DP  Q E  Q L   ++AI+QLP+EMR T++A +ET+G+Y +TA  L + +GTVRSRLSRAR  LR
Sbjct:   34 EDADDILQLTCLEAWRNRDRFSGQASLSTWMCGIAQNLIRSHF--RRVYAKPVHC------EFDELLSHGQDFGTDPGGQFEINQRLERTLIAINQLPAEMRKTVYASLETDGNYRDTACALEVPIGTVRSRLSRAREKLR 166          
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Match: UPI00034D74E1 (RNA polymerase sigma factor n=1 Tax=Erwinia toletana TaxID=92490 RepID=UPI00034D74E1)

HSP 1 Score: 103 bits (256), Expect = 6.940e-25
Identity = 62/141 (43.97%), Postives = 89/141 (63.12%), Query Frame = 0
Query:    1 QDADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQSIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSEMRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLR 141
            +D +D++Q   LE  ++R+ + G SRPETWV GIAVN++R YY+ +   QS   +D + DE  +D+     +   DPS   EQ QLL   + +I +LP ++R+ +   VE EGSY++ A  L I +GTVRSRLSRAR  LR
Sbjct:   47 EDVEDVLQMTCLEVLRNRHKFMGASRPETWVFGIAVNLIRNYYKSQ---QSRYLLDTLDDEITADL-----LFDNDPSDITEQRQLLGATLNSIEKLPGDIRTMLSILVENEGSYQDVAQHLNIPIGTVRSRLSRAREALR 179          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11171.785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00166D61E02.800e-3245.83RNA polymerase sigma factor n=2 Tax=Pseudomonas ma... [more]
J2MDC1_PSEFL5.940e-2941.84RNA polymerase sigma factor n=2 Tax=Pseudomonas Ta... [more]
A0A1H8JSV3_9PSED4.880e-2840.43RNA polymerase sigma factor n=4 Tax=Pseudomonadace... [more]
UPI001905C5681.660e-2740.43RNA polymerase sigma factor n=1 Tax=unclassified P... [more]
UPI001FD69A6E1.770e-2639.72sigma-70 family RNA polymerase sigma factor n=3 Ta... [more]
A0A0A7JTN4_9PSED1.880e-2641.18RNA polymerase sigma factor n=1 Tax=Pseudomonas pa... [more]
A0A125RM52_PSEFL4.270e-2639.72RNA polymerase sigma factor n=31 Tax=Pseudomonadac... [more]
A0A0D4ZZI0_ENTAG1.620e-2543.84Type III secretion system protein n=16 Tax=Enterob... [more]
A0A0J6GW54_PSETA3.520e-2541.84RNA polymerase sigma factor n=3 Tax=Pseudomonas Ta... [more]
UPI00034D74E16.940e-2543.97RNA polymerase sigma factor n=1 Tax=Erwinia toleta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1740.10coord: 1..71
e-value: 1.6E-11
score: 45.9
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 92..137
e-value: 6.8E-10
score: 38.5
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 72..145
e-value: 1.0E-12
score: 49.4
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 2..143
e-value: 1.7E-18
score: 64.8
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 1..47
e-value: 3.2E-7
score: 30.0
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133FAMILY NOT NAMEDcoord: 1..143
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 81..142
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 1..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11171contigE-siliculosus-1a_F_contig11171:1..444 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11171.785.1mRNA_E-siliculosus-1a_F_contig11171.785.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig11171 1..444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig11171.785.1 ID=prot_E-siliculosus-1a_F_contig11171.785.1|Name=mRNA_E-siliculosus-1a_F_contig11171.785.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=148bp
QDADDIIQQAYLEAWKSRNNYNGLSRPETWVCGIAVNMVRKYYQKKRVFQ
SIENIDDVTDEEYSDISPGTPVSSVDPSAQAEQAQLLSGAMMAISQLPSE
MRSTMFARVETEGSYEETALRLGIAVGTVRSRLSRARCMLREQGHAF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3/r4-like
IPR039425RNA_pol_sigma-70
IPR007627RNA_pol_sigma70_r2
IPR014284RNA_pol_sigma-70_dom
IPR036388WH-like_DNA-bd_sf
IPR013249RNA_pol_sigma70_r4_t2