prot_E-siliculosus-1a_F_contig11.681.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig11.681.1
Unique Nameprot_E-siliculosus-1a_F_contig11.681.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length480
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11.681.1 vs. uniprot
Match: A0A6H5JH33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH33_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.510e-18
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0 
Query:  138 MFDAGCGWRLCRRGRGLLRWPETLRKLTFGREFNEPIQGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDIDXXXXXXXXXXXXXXXXXVDAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHAIGNGAAXXXXXXXXXXXXXXXXXIATVSXXPLLEE 317
            MFDAGCGWRL RRGRGLLRWPETLRKLTFGREFNEPIQGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDIDXXXXXXXXXXXXXXXXXVDAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHAIGNGA XXXXXXXXXXXXXXXXXIATVSXXPL+EE
Sbjct:    1 MFDAGCGWRLYRRGRGLLRWPETLRKLTFGREFNEPIQGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDIDXXXXXXXXXXXXXXXXXVDAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHAIGNGAGXXXXXXXXXXXXXXXXXIATVSXXPLMEE 180
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BLAST of mRNA_E-siliculosus-1a_F_contig11.681.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.180e-9
Identity = 56/178 (31.46%), Postives = 78/178 (43.82%), Query Frame = 0 
Query:   22 KTTAQSLCLDALTLAIDTTVDEGGRWYVSAMNLQSVCVDLCVACRTCLSFSAWHVVVTSDTPRRLWLRGEGGAPGIKELC-TRVPLLPVRALTVVW---------CPEIVLTRLSEGGLRYGARTGMFDAGCGWRLCRRGRG------------LLRWPETLRKLTFGREFNEPIQGI 177
            K   +  CL+AL +A++ T D G  WY S   LQ   +D C+ACR C +    H+ V    PRRL    +   P  K LC TRVP L  R+  V W          P   +T +    L +G   G       W    R               L++WP  L+ +TFG +FN+PI+ +
Sbjct:   44 KGPTRKFCLEALIVALNETCD-GKSWYTSTKELQLASLDFCIACRNCQTV---HLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRL--RSRRVTWNMPTAAKLRTPIFAMTDMEY--LEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERV 213
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11.681.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH33_9PHAE1.510e-1898.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE2.180e-931.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 158..189
e-value: 7.0E-5
score: 22.9
coord: 346..388
e-value: 2.4E-8
score: 34.0
coord: 390..431
e-value: 2.5E-6
score: 27.6
coord: 434..474
e-value: 1.1E-9
score: 38.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 266..478
e-value: 3.4E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 223..431
coord: 322..474
coord: 158..320
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 158..320
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 223..431
coord: 322..474
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 160..474

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11contigE-siliculosus-1a_F_contig11:46261..47920 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11.681.1mRNA_E-siliculosus-1a_F_contig11.681.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig11 45398..52391 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig11.681.1 ID=prot_E-siliculosus-1a_F_contig11.681.1|Name=mRNA_E-siliculosus-1a_F_contig11.681.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=480bp
MSSHIRGGAAAESDRVSGGDVKTTAQSLCLDALTLAIDTTVDEGGRWYVS
AMNLQSVCVDLCVACRTCLSFSAWHVVVTSDTPRRLWLRGEGGAPGIKEL
CTRVPLLPVRALTVVWCPEIVLTRLSEGGLRYGARTGMFDAGCGWRLCRR
GRGLLRWPETLRKLTFGREFNEPIQGILWPPSLEEIRFGASFNQPIQDIV
WPACLRRLTFGHYFDQPVDIDWPETLRQLTFGHCFDQRVDAVKWPSSLQE
LVFGAFFNQPIDGVLWPVSLRHLALTGFFKHAIGNGAAWPSSLRRLTIGQ
NFIQPIATVSWPPLLEELTLGTLFNQPIDAVVWPVSLQCLSFGSSFNQPL
DNVSWPALLQRLCFGRAFNQPIDRTSWPSSLQQLTFGQDFNQSIAGVVWP
NSLQRLKFGYRFDQRIDEVTWPDSLQEVCFGRAFNQRIEGVLWPPSLQRL
TFGRSFNQPIDAGAFPGSLKDLILDGVAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP