prot_E-siliculosus-1a_F_contig1082.575.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1082.575.1
Unique Nameprot_E-siliculosus-1a_F_contig1082.575.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length292
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1082.575.1 vs. uniprot
Match: A0A7S2MQ94_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQ94_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.110e-46
Identity = 86/193 (44.56%), Postives = 114/193 (59.07%), Query Frame = 0
Query:   95 DDGMFDPRR-DYWGNFSRTVAQSGATTPAG----SNWVAAANRGLASTSSNCGPASSSDPCCIECFGLSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSK---TFRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQV-YPCRSYCVQLAKTCANNVVEWQELCRSIDCPPTDEECMPGP 278
            DDG F+P    +WG+ ++T  Q  AT P      S+  A    G A+   +CG   +  PCCI+C  L YC  +N Y +EDKY+P E  I GSC+  +DR  RLE+FGP+    TFRDTD CR +V+DY CLWW S N+ YDNRC     +  PCRSYCVQ+   CAN++ +W + C  I+C   +  C  GP
Sbjct:    2 DDGHFNPASFQWWGSVNKTRRQL-ATAPGALTCESSACACETEGNAA---DCGIDDNQCPCCIQCESLDYCSAINFYVMEDKYYPTENDITGSCDMLDDRIQRLEIFGPASLGYTFRDTDQCRSLVMDYICLWWASENDHYDNRCDYGEDIDRPCRSYCVQVGLVCANSL-DWLDTCYHIECASNEAGCTTGP 189          
BLAST of mRNA_E-siliculosus-1a_F_contig1082.575.1 vs. uniprot
Match: A0A7S2C5P0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5P0_9STRA)

HSP 1 Score: 150 bits (379), Expect = 8.240e-40
Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = 0
Query:  140 NCGPASSSDPCCIECFG--LSYC-DVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQVY-PCRSYCVQLAKTCANNVVEWQELCRSIDCPPTD-EECMPGPYS 280
            +CG +    PCCI C    +SYC D L G  +ED+Y+P E  I GSC+N ++R   L+VFG  KTFRD D CR++V +Y CLWWGS N  Y+NRC    Q   PCR +CVQ+   CANN  +W  LC  I C   D  EC P PYS
Sbjct:  121 DCGTSDEECPCCIRCLNEEMSYCHDALGGKLLEDQYYPTEKGISGSCDNLDERVGALDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYS 265          
BLAST of mRNA_E-siliculosus-1a_F_contig1082.575.1 vs. uniprot
Match: A0A8J2WWI3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWI3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.000e-38
Identity = 82/195 (42.05%), Postives = 111/195 (56.92%), Query Frame = 0
Query:   93 FVDDGMFDPRRDYWGNFSRTVAQSGATTPAGSNWVAAANRGLASTSSNCGPASSSDPCCIECFG-LSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCLWWGS--ANEMYDNRCGIEAQVY--PCRSYCVQLAKTCANNVVEWQELCRSIDCPPTDEECMPGPYSQA 282
            +VDDGMFDPR ++   F  T A                 R      + C  A   D CC  C   L  C  + GY VEDKY+P E ++ GSC++ + R + L+VFGPSKTFRD D CR +V +Y CLWWGS   ++  +N C  +  +   PCR +CVQ+A  CAN++ ++Q LC++I CPP +E CMP P S A
Sbjct:   83 WVDDGMFDPR-EHDPRFMVTNA----------------TRRRRLEENRCEAA---DICCSLCKNDLQTCWRMAGYLVEDKYYPSEQSVTGSCDDIDRRVANLDVFGPSKTFRDNDLCRRLVNEYMCLWWGSEGVDQSSENHCSSKGVILVAPCRPFCVQVAIQCANSL-DYQRLCQAIPCPPIEETCMPEPRSVA 256          
BLAST of mRNA_E-siliculosus-1a_F_contig1082.575.1 vs. uniprot
Match: A0A835Z6T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.600e-36
Identity = 91/266 (34.21%), Postives = 116/266 (43.61%), Query Frame = 0
Query:   98 MFDPRRDYWGNFSRTVAQSGATTPAGSNWVAAANRGLAS-----------TSSNCGPASSSDPCCIECFGLSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSKT-----------------------------------------------FRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQVYPCRSYCVQLAKTCANNVVEWQELCR--------------------------SIDCPPTDEECMPGPY 279
            M+DPR  +W   S  VA + A T AG +  A A     +             + CG A +  PCC+ C GL+ C VLN Y VE+KY+PG +  +GSC NF+DR SRL VFGP KT                                               FRDT  CR+ V  YTCLWWG+ N  +DNRCG  A   PCRS+CVQ+A+ CAN+   W                                I CPP  ++C+PGP+
Sbjct:    1 MWDPRT-HWQRDS--VAAADADTSAGKHSDAVAGGAKQAGDGDGYEHGRQLQTGCGVAPNPVPCCVLCLGLNQCSVLNSYAVEEKYYPGSSGTVGSCTNFDDRVSRLAVFGPEKTVWXXXXXXXXXXXXXXXSCDAAQVXXXXXXXXEKTVSXXXXXXXXXXFRDTPDCRKWVYAYTCLWWGTDNAHFDNRCGSFANRPPCRSFCVQVAEVCANDP-GWNAAAXXXXXXXAAAQVXXXXXXXXXXXXXXXGIACPPIADDCVPGPF 262          
BLAST of mRNA_E-siliculosus-1a_F_contig1082.575.1 vs. uniprot
Match: A0A7S2FUR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.420e-23
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0
Query:  193 LEVFGPSKTFRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQVY-PCRSYCVQLAKTCANNVVEWQELCRSIDCPPTD-EECMPGPYS 280
            L+VFG  KTFRD D CR++V +Y CLWWGS N  Y+NRC    Q   PCR +CVQ+   CANN  +W  LC  I C   D  EC P PYS
Sbjct:    8 LDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYS 96          
BLAST of mRNA_E-siliculosus-1a_F_contig1082.575.1 vs. uniprot
Match: A0A482SB23_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB23_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 2.780e-8
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 0
Query:  151 CIECFGLSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLE--VFGPSKTFRDTDACR 209
            C+ C GLS C  LNGY V++KY+P       +C+  +   SR+E  +FG S+TFRDT  CR
Sbjct:   69 CVICRGLSVCTALNGYLVQEKYYPKNLNFRETCKVIDTFGSRIEKSIFGGSRTFRDTAQCR 129          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1082.575.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2MQ94_9STRA3.110e-4644.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C5P0_9STRA8.240e-4049.32Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2WWI3_9STRA7.000e-3842.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835Z6T3_9STRA3.600e-3634.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FUR6_9STRA1.420e-2353.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482SB23_9ARCH2.780e-845.90Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..291
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availableTMHMMTMhelixcoord: 12..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1082contigE-siliculosus-1a_F_contig1082:25720..28222 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1082.575.1mRNA_E-siliculosus-1a_F_contig1082.575.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1082 25720..28222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1082.575.1 ID=prot_E-siliculosus-1a_F_contig1082.575.1|Name=mRNA_E-siliculosus-1a_F_contig1082.575.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=292bp
MSGSRKRLRSPIVVARAASATVVCSSIMLLALSENRPRNHQQQHPKQVYS
SRSSRISVMRKLSFFVAASAATSAEEGTGSNIATVPATPREPFVDDGMFD
PRRDYWGNFSRTVAQSGATTPAGSNWVAAANRGLASTSSNCGPASSSDPC
CIECFGLSYCDVLNGYKVEDKYFPGEATILGSCENFEDRASRLEVFGPSK
TFRDTDACREMVIDYTCLWWGSANEMYDNRCGIEAQVYPCRSYCVQLAKT
CANNVVEWQELCRSIDCPPTDEECMPGPYSQAREATQGYQL*
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