mRNA_E-siliculosus-1a_F_contig17190.4007.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: UPI001865CB10 (efflux RND transporter permease subunit n=1 Tax=Halomonas sp. 3A7M TaxID=2742616 RepID=UPI001865CB10) HSP 1 Score: 451 bits (1160), Expect = 1.050e-157 Identity = 231/259 (89.19%), Postives = 251/259 (96.91%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSR+EIEF I M+I+AAAND+RDRISGALRNLPDDADNPEVTKADSSE IVVWLSLSG DYSITELTDYANR+LVDSLSVQPGVARVRVGGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGSIESEDRQFIVRLPRSFA+ADDFK++A+ +G NGYLVRLGD+ARVE+G+VEDRSVFR+NGVPMVGLGMIMQSTAN++ELSEAV+QEL+R
Sbjct: 48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRVEIEFAITMDINAAANDIRDRISGALRNLPDDADNPEVTKADSSETIVVWLSLSGADYSITELTDYANRFLVDSLSVQPGVARVRVGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSIESEDRQFIVRLPRSFATADDFKQIALIEGSNGYLVRLGDVARVEIGSVEDRSVFRANGVPMVGLGMIMQSTANVVELSEAVRQELDR 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A3T1DTQ8_9GAMM (Uncharacterized protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A3T1DTQ8_9GAMM) HSP 1 Score: 462 bits (1189), Expect = 2.270e-157 Identity = 244/267 (91.39%), Postives = 256/267 (95.88%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAIN--------QGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGID +I+AAAND+RDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANR+LVDSLSVQPGVARVRVGGGSDYAMRVWL+RNALAARGLTVSDIEDALRAENVELPAGS+ESEDRQFIVRLPRSFASA+DF+RLAIN QGDNGYLVRL D+ARVEVGAVEDRSVFRSNG+PMVGLGMIMQSTAN+IELSEAVQ ELER
Sbjct: 48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDRDINAAANDIRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRFLVDSLSVQPGVARVRVGGGSDYAMRVWLDRNALAARGLTVSDIEDALRAENVELPAGSLESEDRQFIVRLPRSFASAEDFQRLAINSPRNTSLNQGDNGYLVRLSDVARVEVGAVEDRSVFRSNGIPMVGLGMIMQSTANVIELSEAVQIELER 314
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A455VAQ6_9GAMM (Uncharacterized protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A455VAQ6_9GAMM) HSP 1 Score: 444 bits (1142), Expect = 8.000e-154 Identity = 230/259 (88.80%), Postives = 248/259 (95.75%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEF I M+I+AAAND+RDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSG DYSI ELTDYANR+LVDSLSVQPGVARVRVGGG DYAMRVWL+RNALAARGLTV D+EDALRAENVELPAGSIES+DRQFIVRLPRSFA+A+DF+ LA+ Q +NGYLVRL D+ARVEVG+VEDRSVFR+NGVPMVGLGMIMQSTAN+IELSEAVQ+EL R
Sbjct: 48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFAITMDINAAANDIRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGADYSIAELTDYANRFLVDSLSVQPGVARVRVGGGQDYAMRVWLDRNALAARGLTVGDVEDALRAENVELPAGSIESDDRQFIVRLPRSFATAEDFQGLALAQSNNGYLVRLSDVARVEVGSVEDRSVFRANGVPMVGLGMIMQSTANVIELSEAVQEELGR 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A2A3XEI3_9GAMM (Multidrug transporter AcrB n=37 Tax=root TaxID=1 RepID=A0A2A3XEI3_9GAMM) HSP 1 Score: 464 bits (1193), Expect = 9.080e-154 Identity = 238/259 (91.89%), Postives = 256/259 (98.84%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASA+VVETRITQVLEDRIAGVEGI+LITSQSEDGRSRIEIEF +DM+IDAAAND+RDRISGALRNLPDDADNPEVTKADSSEEIVVW+SLSGEDYSITELTDYANR+LVDSLSVQPGVARVRVGGGSDYAMRVW+NRNALAARGLTVSDIED+LRAENVELPAGSIES+DRQFIVRLPRSFASA+DF+RLA+NQGDNGYLVRL D+ARVEVGAVEDR+VFRSNGVPMVGLGMIMQSTAN+IELS+AV+ ELER
Sbjct: 48 DTRYPGASASVVETRITQVLEDRIAGVEGIDLITSQSEDGRSRIEIEFSLDMDIDAAANDIRDRISGALRNLPDDADNPEVTKADSSEEIVVWMSLSGEDYSITELTDYANRFLVDSLSVQPGVARVRVGGGSDYAMRVWVNRNALAARGLTVSDIEDSLRAENVELPAGSIESQDRQFIVRLPRSFASAEDFQRLALNQGDNGYLVRLADVARVEVGAVEDRTVFRSNGVPMVGLGMIMQSTANVIELSDAVKIELER 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A1R4HU05_9GAMM (RND multidrug efflux transporter Acriflavin resistance protein n=4 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1R4HU05_9GAMM) HSP 1 Score: 453 bits (1166), Expect = 6.660e-150 Identity = 232/259 (89.58%), Postives = 251/259 (96.91%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASANVVETRITQVLEDRIAGVEGIELITS+SEDGRSRIEIEFGI+M+I+AAAND+RDRISGALRNLPDDAD PEVTKADSSEEIVVWLSLSG DYSITELTDYANR+LVDSLSVQPGVARVR+GGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGSIES+DRQFIVRLPRSFA+ADDFKRLA+NQ DNGYLVRL D+ARVEVG+VEDRSVFR+NG+PMVGLG++MQSTAN+IELS AV+ ELER
Sbjct: 48 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSRSEDGRSRIEIEFGIEMDINAAANDIRDRISGALRNLPDDADAPEVTKADSSEEIVVWLSLSGADYSITELTDYANRFLVDSLSVQPGVARVRIGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSIESQDRQFIVRLPRSFATADDFKRLALNQSDNGYLVRLADVARVEVGSVEDRSVFRANGIPMVGLGIVMQSTANVIELSSAVRNELER 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A2T0UU96_9GAMM (Multidrug efflux pump n=5 Tax=Halomonas TaxID=2745 RepID=A0A2T0UU96_9GAMM) HSP 1 Score: 452 bits (1163), Expect = 2.250e-149 Identity = 232/259 (89.58%), Postives = 251/259 (96.91%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGA+ANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEF IDM+I+AAAND+RDRI+GALRNLPDDAD PEVTKADSSEEIVVWLSLSG DYSITELTDYANR+LVDSLSVQPGVARVR+GGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGSIES+DRQFIVRLPRSFA+ADDFKRLA++QG+NGYLVRL D+ARVEVG+VEDRSVFR+NG+PMVGLGMIMQSTAN+IELS+AVQ EL R
Sbjct: 48 DTRYPGAAANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFSIDMDINAAANDIRDRIAGALRNLPDDADTPEVTKADSSEEIVVWLSLSGADYSITELTDYANRFLVDSLSVQPGVARVRLGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSIESQDRQFIVRLPRSFATADDFKRLALSQGENGYLVRLADVARVEVGSVEDRSVFRANGIPMVGLGMIMQSTANVIELSDAVQAELAR 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: UPI001D0AE336 (efflux RND transporter permease subunit n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0AE336) HSP 1 Score: 440 bits (1132), Expect = 7.760e-145 Identity = 229/259 (88.42%), Postives = 247/259 (95.37%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEF I M+ID+AANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSG +YS+TELTDYANRYLVDSLSVQPGVARVRVGGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGS++S DRQFIVRLPR+FA+ADDFKRLA++QG G LVRL D+ARVEVGAVEDRSVFR+NGVPMVGLG+IMQSTAN++ LSEAVQ+EL R
Sbjct: 48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFAITMDIDSAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGANYSMTELTDYANRYLVDSLSVQPGVARVRVGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSLQSADRQFIVRLPRAFATADDFKRLALDQGARGELVRLADVARVEVGAVEDRSVFRANGVPMVGLGIIMQSTANVLALSEAVQEELGR 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: H0J4Y9_9GAMM (Acriflavin resistance protein n=52 Tax=Halomonadaceae TaxID=28256 RepID=H0J4Y9_9GAMM) HSP 1 Score: 430 bits (1106), Expect = 7.030e-141 Identity = 221/259 (85.33%), Postives = 245/259 (94.59%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASA+VVETRITQVLEDRIAGVEGIELITS+SEDGRSRIEIEF I +IDAAANDVRDRISGALRNLPDDADNPEVTK DSSE +V+WLSLSG DY+ITELTDYANR+LVDSLSVQ GVARVRVGGG DYAMRVWL+RNALA+RGLTV DIEDALRAENVELPAGSIES DRQFIVRLPRSFA+ DDFK+LA+++GDNG+L+RL ++ARVE+G+VEDRSVFR+NGVPMVGLG+IMQSTANI+ELS AVQQE+ R
Sbjct: 48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSRSEDGRSRIEIEFAITRDIDAAANDVRDRISGALRNLPDDADNPEVTKTDSSETVVMWLSLSGADYTITELTDYANRFLVDSLSVQTGVARVRVGGGRDYAMRVWLDRNALASRGLTVGDIEDALRAENVELPAGSIESVDRQFIVRLPRSFATPDDFKQLALSRGDNGHLMRLSEVARVEIGSVEDRSVFRANGVPMVGLGIIMQSTANIVELSAAVQQEMTR 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A1A0ERS0_9GAMM (Multidrug transporter AcrB n=10 Tax=Halomonas TaxID=2745 RepID=A0A1A0ERS0_9GAMM) HSP 1 Score: 429 bits (1104), Expect = 1.140e-140 Identity = 217/259 (83.78%), Postives = 246/259 (94.98%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASA+VVETRITQVLEDRIAGVEGI+LITS+SEDGRSRI+IEF + M+IDAAANDVRDRI GALRNLPDDA+NPEV+KADSSEE+VVWLSLSG+ YSITELTDYANR+LVDSLSVQPGVARVRVGGG DYAMRVW++RNA+AAR LTV DIED+LRAENVELPAG+IESEDRQFIVRLPR+F +ADDF+ L + +GD+GYLVRLGD+ARVEVG+VEDR+VFR+NG PMVGLGMIMQSTAN++ELS AV+QELER
Sbjct: 48 DTRYPGASASVVETRITQVLEDRIAGVEGIDLITSESEDGRSRIDIEFALTMDIDAAANDVRDRIGGALRNLPDDAENPEVSKADSSEEVVVWLSLSGDGYSITELTDYANRFLVDSLSVQPGVARVRVGGGRDYAMRVWIDRNAMAARNLTVGDIEDSLRAENVELPAGAIESEDRQFIVRLPRTFETADDFQALPLAEGDDGYLVRLGDVARVEVGSVEDRTVFRANGTPMVGLGMIMQSTANVVELSGAVRQELER 306
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A120JWP6_9GAMM (Multidrug export protein AcrF n=1 Tax=Halomonas chromatireducens TaxID=507626 RepID=A0A120JWP6_9GAMM) HSP 1 Score: 410 bits (1054), Expect = 1.830e-136 Identity = 207/259 (79.92%), Postives = 236/259 (91.12%), Query Frame = 1
Query: 1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
DTRYPGASANVVETRITQ+LEDRIAGVEGI+LITS SEDGRSRI IEF +DM+IDAAANDVRDRISGALRNLPD+AD PEV KADSSEE+V+WLSLSG+DY+I ELTDYA+RYLVD SVQPGVARVRVGGG +YAMRVWL+RNALAAR LTV D+E ALRAENVELPAGSIES DRQF+VRLPR+F DDF+RLA+ Q +GYLVRLGD+ARVE+G+V+DRS+FR+NGVPMVGLG++ QSTAN++E+SE VQ EL R
Sbjct: 48 DTRYPGASANVVETRITQLLEDRIAGVEGIQLITSSSEDGRSRINIEFRLDMDIDAAANDVRDRISGALRNLPDEADPPEVQKADSSEEVVLWLSLSGDDYTIPELTDYADRYLVDGFSVQPGVARVRVGGGREYAMRVWLDRNALAARNLTVGDVESALRAENVELPAGSIESRDRQFMVRLPRTFNQPDDFERLALTQSPDGYLVRLGDVARVEIGSVDDRSIFRANGVPMVGLGIMKQSTANVLEVSEGVQAELAR 306 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig17190.4007.1 >prot_E-siliculosus-1a_F_contig17190.4007.1 ID=prot_E-siliculosus-1a_F_contig17190.4007.1|Name=mRNA_E-siliculosus-1a_F_contig17190.4007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=259bp DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIback to top mRNA from alignment at E-siliculosus-1a_F_contig17190:1..777- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig17190.4007.1 ID=mRNA_E-siliculosus-1a_F_contig17190.4007.1|Name=mRNA_E-siliculosus-1a_F_contig17190.4007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=777bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig17190:1..777- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig17190:1..777- >mRNA_E-siliculosus-1a_F_contig17190.4007.1 ID=mRNA_E-siliculosus-1a_F_contig17190.4007.1|Name=mRNA_E-siliculosus-1a_F_contig17190.4007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig17190:1..777- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |