mRNA_E-siliculosus-1a_F_contig17190.4007.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig17190.4007.1
Unique NamemRNA_E-siliculosus-1a_F_contig17190.4007.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: UPI001865CB10 (efflux RND transporter permease subunit n=1 Tax=Halomonas sp. 3A7M TaxID=2742616 RepID=UPI001865CB10)

HSP 1 Score: 451 bits (1160), Expect = 1.050e-157
Identity = 231/259 (89.19%), Postives = 251/259 (96.91%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSR+EIEF I M+I+AAAND+RDRISGALRNLPDDADNPEVTKADSSE IVVWLSLSG DYSITELTDYANR+LVDSLSVQPGVARVRVGGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGSIESEDRQFIVRLPRSFA+ADDFK++A+ +G NGYLVRLGD+ARVE+G+VEDRSVFR+NGVPMVGLGMIMQSTAN++ELSEAV+QEL+R
Sbjct:   48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRVEIEFAITMDINAAANDIRDRISGALRNLPDDADNPEVTKADSSETIVVWLSLSGADYSITELTDYANRFLVDSLSVQPGVARVRVGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSIESEDRQFIVRLPRSFATADDFKQIALIEGSNGYLVRLGDVARVEIGSVEDRSVFRANGVPMVGLGMIMQSTANVVELSEAVRQELDR 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A3T1DTQ8_9GAMM (Uncharacterized protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A3T1DTQ8_9GAMM)

HSP 1 Score: 462 bits (1189), Expect = 2.270e-157
Identity = 244/267 (91.39%), Postives = 256/267 (95.88%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAIN--------QGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGID +I+AAAND+RDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANR+LVDSLSVQPGVARVRVGGGSDYAMRVWL+RNALAARGLTVSDIEDALRAENVELPAGS+ESEDRQFIVRLPRSFASA+DF+RLAIN        QGDNGYLVRL D+ARVEVGAVEDRSVFRSNG+PMVGLGMIMQSTAN+IELSEAVQ ELER
Sbjct:   48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDRDINAAANDIRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRFLVDSLSVQPGVARVRVGGGSDYAMRVWLDRNALAARGLTVSDIEDALRAENVELPAGSLESEDRQFIVRLPRSFASAEDFQRLAINSPRNTSLNQGDNGYLVRLSDVARVEVGAVEDRSVFRSNGIPMVGLGMIMQSTANVIELSEAVQIELER 314          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A455VAQ6_9GAMM (Uncharacterized protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A455VAQ6_9GAMM)

HSP 1 Score: 444 bits (1142), Expect = 8.000e-154
Identity = 230/259 (88.80%), Postives = 248/259 (95.75%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEF I M+I+AAAND+RDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSG DYSI ELTDYANR+LVDSLSVQPGVARVRVGGG DYAMRVWL+RNALAARGLTV D+EDALRAENVELPAGSIES+DRQFIVRLPRSFA+A+DF+ LA+ Q +NGYLVRL D+ARVEVG+VEDRSVFR+NGVPMVGLGMIMQSTAN+IELSEAVQ+EL R
Sbjct:   48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFAITMDINAAANDIRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGADYSIAELTDYANRFLVDSLSVQPGVARVRVGGGQDYAMRVWLDRNALAARGLTVGDVEDALRAENVELPAGSIESDDRQFIVRLPRSFATAEDFQGLALAQSNNGYLVRLSDVARVEVGSVEDRSVFRANGVPMVGLGMIMQSTANVIELSEAVQEELGR 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A2A3XEI3_9GAMM (Multidrug transporter AcrB n=37 Tax=root TaxID=1 RepID=A0A2A3XEI3_9GAMM)

HSP 1 Score: 464 bits (1193), Expect = 9.080e-154
Identity = 238/259 (91.89%), Postives = 256/259 (98.84%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASA+VVETRITQVLEDRIAGVEGI+LITSQSEDGRSRIEIEF +DM+IDAAAND+RDRISGALRNLPDDADNPEVTKADSSEEIVVW+SLSGEDYSITELTDYANR+LVDSLSVQPGVARVRVGGGSDYAMRVW+NRNALAARGLTVSDIED+LRAENVELPAGSIES+DRQFIVRLPRSFASA+DF+RLA+NQGDNGYLVRL D+ARVEVGAVEDR+VFRSNGVPMVGLGMIMQSTAN+IELS+AV+ ELER
Sbjct:   48 DTRYPGASASVVETRITQVLEDRIAGVEGIDLITSQSEDGRSRIEIEFSLDMDIDAAANDIRDRISGALRNLPDDADNPEVTKADSSEEIVVWMSLSGEDYSITELTDYANRFLVDSLSVQPGVARVRVGGGSDYAMRVWVNRNALAARGLTVSDIEDSLRAENVELPAGSIESQDRQFIVRLPRSFASAEDFQRLALNQGDNGYLVRLADVARVEVGAVEDRTVFRSNGVPMVGLGMIMQSTANVIELSDAVKIELER 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A1R4HU05_9GAMM (RND multidrug efflux transporter Acriflavin resistance protein n=4 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1R4HU05_9GAMM)

HSP 1 Score: 453 bits (1166), Expect = 6.660e-150
Identity = 232/259 (89.58%), Postives = 251/259 (96.91%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASANVVETRITQVLEDRIAGVEGIELITS+SEDGRSRIEIEFGI+M+I+AAAND+RDRISGALRNLPDDAD PEVTKADSSEEIVVWLSLSG DYSITELTDYANR+LVDSLSVQPGVARVR+GGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGSIES+DRQFIVRLPRSFA+ADDFKRLA+NQ DNGYLVRL D+ARVEVG+VEDRSVFR+NG+PMVGLG++MQSTAN+IELS AV+ ELER
Sbjct:   48 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSRSEDGRSRIEIEFGIEMDINAAANDIRDRISGALRNLPDDADAPEVTKADSSEEIVVWLSLSGADYSITELTDYANRFLVDSLSVQPGVARVRIGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSIESQDRQFIVRLPRSFATADDFKRLALNQSDNGYLVRLADVARVEVGSVEDRSVFRANGIPMVGLGIVMQSTANVIELSSAVRNELER 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A2T0UU96_9GAMM (Multidrug efflux pump n=5 Tax=Halomonas TaxID=2745 RepID=A0A2T0UU96_9GAMM)

HSP 1 Score: 452 bits (1163), Expect = 2.250e-149
Identity = 232/259 (89.58%), Postives = 251/259 (96.91%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGA+ANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEF IDM+I+AAAND+RDRI+GALRNLPDDAD PEVTKADSSEEIVVWLSLSG DYSITELTDYANR+LVDSLSVQPGVARVR+GGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGSIES+DRQFIVRLPRSFA+ADDFKRLA++QG+NGYLVRL D+ARVEVG+VEDRSVFR+NG+PMVGLGMIMQSTAN+IELS+AVQ EL R
Sbjct:   48 DTRYPGAAANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFSIDMDINAAANDIRDRIAGALRNLPDDADTPEVTKADSSEEIVVWLSLSGADYSITELTDYANRFLVDSLSVQPGVARVRLGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSIESQDRQFIVRLPRSFATADDFKRLALSQGENGYLVRLADVARVEVGSVEDRSVFRANGIPMVGLGMIMQSTANVIELSDAVQAELAR 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: UPI001D0AE336 (efflux RND transporter permease subunit n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0AE336)

HSP 1 Score: 440 bits (1132), Expect = 7.760e-145
Identity = 229/259 (88.42%), Postives = 247/259 (95.37%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASA+VVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEF I M+ID+AANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSG +YS+TELTDYANRYLVDSLSVQPGVARVRVGGG DYAMRVWL+RNALAARGLTV DIEDALRAENVELPAGS++S DRQFIVRLPR+FA+ADDFKRLA++QG  G LVRL D+ARVEVGAVEDRSVFR+NGVPMVGLG+IMQSTAN++ LSEAVQ+EL R
Sbjct:   48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFAITMDIDSAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGANYSMTELTDYANRYLVDSLSVQPGVARVRVGGGRDYAMRVWLDRNALAARGLTVGDIEDALRAENVELPAGSLQSADRQFIVRLPRAFATADDFKRLALDQGARGELVRLADVARVEVGAVEDRSVFRANGVPMVGLGIIMQSTANVLALSEAVQEELGR 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: H0J4Y9_9GAMM (Acriflavin resistance protein n=52 Tax=Halomonadaceae TaxID=28256 RepID=H0J4Y9_9GAMM)

HSP 1 Score: 430 bits (1106), Expect = 7.030e-141
Identity = 221/259 (85.33%), Postives = 245/259 (94.59%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASA+VVETRITQVLEDRIAGVEGIELITS+SEDGRSRIEIEF I  +IDAAANDVRDRISGALRNLPDDADNPEVTK DSSE +V+WLSLSG DY+ITELTDYANR+LVDSLSVQ GVARVRVGGG DYAMRVWL+RNALA+RGLTV DIEDALRAENVELPAGSIES DRQFIVRLPRSFA+ DDFK+LA+++GDNG+L+RL ++ARVE+G+VEDRSVFR+NGVPMVGLG+IMQSTANI+ELS AVQQE+ R
Sbjct:   48 DTRYPGASASVVETRITQVLEDRIAGVEGIELITSRSEDGRSRIEIEFAITRDIDAAANDVRDRISGALRNLPDDADNPEVTKTDSSETVVMWLSLSGADYTITELTDYANRFLVDSLSVQTGVARVRVGGGRDYAMRVWLDRNALASRGLTVGDIEDALRAENVELPAGSIESVDRQFIVRLPRSFATPDDFKQLALSRGDNGHLMRLSEVARVEIGSVEDRSVFRANGVPMVGLGIIMQSTANIVELSAAVQQEMTR 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A1A0ERS0_9GAMM (Multidrug transporter AcrB n=10 Tax=Halomonas TaxID=2745 RepID=A0A1A0ERS0_9GAMM)

HSP 1 Score: 429 bits (1104), Expect = 1.140e-140
Identity = 217/259 (83.78%), Postives = 246/259 (94.98%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASA+VVETRITQVLEDRIAGVEGI+LITS+SEDGRSRI+IEF + M+IDAAANDVRDRI GALRNLPDDA+NPEV+KADSSEE+VVWLSLSG+ YSITELTDYANR+LVDSLSVQPGVARVRVGGG DYAMRVW++RNA+AAR LTV DIED+LRAENVELPAG+IESEDRQFIVRLPR+F +ADDF+ L + +GD+GYLVRLGD+ARVEVG+VEDR+VFR+NG PMVGLGMIMQSTAN++ELS AV+QELER
Sbjct:   48 DTRYPGASASVVETRITQVLEDRIAGVEGIDLITSESEDGRSRIDIEFALTMDIDAAANDVRDRIGGALRNLPDDAENPEVSKADSSEEVVVWLSLSGDGYSITELTDYANRFLVDSLSVQPGVARVRVGGGRDYAMRVWIDRNAMAARNLTVGDIEDSLRAENVELPAGAIESEDRQFIVRLPRTFETADDFQALPLAEGDDGYLVRLGDVARVEVGSVEDRTVFRANGTPMVGLGMIMQSTANVVELSGAVRQELER 306          
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Match: A0A120JWP6_9GAMM (Multidrug export protein AcrF n=1 Tax=Halomonas chromatireducens TaxID=507626 RepID=A0A120JWP6_9GAMM)

HSP 1 Score: 410 bits (1054), Expect = 1.830e-136
Identity = 207/259 (79.92%), Postives = 236/259 (91.12%), Query Frame = 1
Query:    1 DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGIDMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGEDYSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARGLTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQGDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELSEAVQQELER 777
            DTRYPGASANVVETRITQ+LEDRIAGVEGI+LITS SEDGRSRI IEF +DM+IDAAANDVRDRISGALRNLPD+AD PEV KADSSEE+V+WLSLSG+DY+I ELTDYA+RYLVD  SVQPGVARVRVGGG +YAMRVWL+RNALAAR LTV D+E ALRAENVELPAGSIES DRQF+VRLPR+F   DDF+RLA+ Q  +GYLVRLGD+ARVE+G+V+DRS+FR+NGVPMVGLG++ QSTAN++E+SE VQ EL R
Sbjct:   48 DTRYPGASANVVETRITQLLEDRIAGVEGIQLITSSSEDGRSRINIEFRLDMDIDAAANDVRDRISGALRNLPDEADPPEVQKADSSEEVVLWLSLSGDDYTIPELTDYADRYLVDGFSVQPGVARVRVGGGREYAMRVWLDRNALAARNLTVGDVESALRAENVELPAGSIESRDRQFMVRLPRTFNQPDDFERLALTQSPDGYLVRLGDVARVEIGSVDDRSIFRANGVPMVGLGIMKQSTANVLEVSEGVQAELAR 306          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig17190.4007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001865CB101.050e-15789.19efflux RND transporter permease subunit n=1 Tax=Ha... [more]
A0A3T1DTQ8_9GAMM2.270e-15791.39Uncharacterized protein n=2 Tax=Halomonas TaxID=27... [more]
A0A455VAQ6_9GAMM8.000e-15488.80Uncharacterized protein n=2 Tax=Halomonas TaxID=27... [more]
A0A2A3XEI3_9GAMM9.080e-15491.89Multidrug transporter AcrB n=37 Tax=root TaxID=1 R... [more]
A0A1R4HU05_9GAMM6.660e-15089.58RND multidrug efflux transporter Acriflavin resist... [more]
A0A2T0UU96_9GAMM2.250e-14989.58Multidrug efflux pump n=5 Tax=Halomonas TaxID=2745... [more]
UPI001D0AE3367.760e-14588.42efflux RND transporter permease subunit n=1 Tax=Ha... [more]
H0J4Y9_9GAMM7.030e-14185.33Acriflavin resistance protein n=52 Tax=Halomonadac... [more]
A0A1A0ERS0_9GAMM1.140e-14083.78Multidrug transporter AcrB n=10 Tax=Halomonas TaxI... [more]
A0A120JWP6_9GAMM1.830e-13679.92Multidrug export protein AcrF n=1 Tax=Halomonas ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig17190contigE-siliculosus-1a_F_contig17190:1..777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size777
Model size777
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01504,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.V
EggNOG OGs1MU48@1224,1RMBN@1236,1XH4Q@135619,COG0841@1,COG0841@2
EggNOG free text desc.efflux pump
KEGG ModuleM00647,M00699,M00718
KEGG Pathwayko01501,ko01503,map01501,map01503
KEGG TC2.A.6.2
KEGG koko:K03296,ko:K18138
Preferred nameacrF
Seed eggNOG ortholog1504981.KO116_4203
Seed ortholog evalue5.4e-128
Seed ortholog score463.8
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.9947343-CDS-E-siliculosus-1a_F_contig17190:0..7771622928219.9947343-CDS-E-siliculosus-1a_F_contig17190:0..777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig17190 1..777 -
1696318851.507609-CDS-E-siliculosus-1a_F_contig17190:0..7771696318851.507609-CDS-E-siliculosus-1a_F_contig17190:0..777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig17190 1..777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig17190.4007.1prot_E-siliculosus-1a_F_contig17190.4007.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig17190 1..777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig17190.4007.1

>prot_E-siliculosus-1a_F_contig17190.4007.1 ID=prot_E-siliculosus-1a_F_contig17190.4007.1|Name=mRNA_E-siliculosus-1a_F_contig17190.4007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=259bp
DTRYPGASANVVETRITQVLEDRIAGVEGIELITSQSEDGRSRIEIEFGI
DMNIDAAANDVRDRISGALRNLPDDADNPEVTKADSSEEIVVWLSLSGED
YSITELTDYANRYLVDSLSVQPGVARVRVGGGSDYAMRVWLNRNALAARG
LTVSDIEDALRAENVELPAGSIESEDRQFIVRLPRSFASADDFKRLAINQ
GDNGYLVRLGDIARVEVGAVEDRSVFRSNGVPMVGLGMIMQSTANIIELS
EAVQQELER
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mRNA from alignment at E-siliculosus-1a_F_contig17190:1..777-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig17190.4007.1 ID=mRNA_E-siliculosus-1a_F_contig17190.4007.1|Name=mRNA_E-siliculosus-1a_F_contig17190.4007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=777bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig17190:1..777- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATACCCGCTACCCCGGTGCTTCAGCCAACGTCGTGGAAACCCGCATCAC TCAGGTGTTAGAAGATCGTATTGCGGGGGTGGAAGGCATTGAGCTGATTA CCTCTCAAAGCGAAGATGGCCGCTCTCGCATCGAAATAGAGTTTGGCATT GATATGAATATCGATGCCGCCGCCAATGATGTTCGCGACCGTATTTCTGG CGCATTACGTAACCTACCCGATGATGCCGATAACCCTGAAGTCACCAAAG CGGATAGCAGTGAAGAGATTGTTGTCTGGCTAAGCCTTTCCGGTGAAGAC TATTCCATCACCGAACTGACCGACTACGCCAACCGCTACCTGGTCGATAG CCTGTCAGTTCAGCCTGGTGTGGCGCGGGTACGTGTCGGTGGTGGCAGCG ATTATGCCATGCGCGTCTGGCTGAATCGCAACGCATTAGCCGCCCGAGGC CTGACCGTTAGCGATATTGAAGATGCCTTACGAGCCGAAAACGTTGAGCT ACCGGCAGGTTCGATTGAATCAGAAGATCGACAGTTTATTGTGCGGCTAC CCCGCAGCTTTGCCAGCGCCGATGATTTTAAGCGCCTTGCCATTAATCAG GGTGATAACGGCTACCTAGTGCGCCTGGGTGATATTGCCAGGGTAGAAGT TGGTGCAGTGGAAGATCGATCCGTATTTCGCTCTAACGGCGTCCCGATGG TCGGCCTTGGCATGATCATGCAGTCCACCGCTAATATCATAGAGCTTTCT GAAGCGGTACAGCAGGAACTGGAACGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig17190:1..777-

>mRNA_E-siliculosus-1a_F_contig17190.4007.1 ID=mRNA_E-siliculosus-1a_F_contig17190.4007.1|Name=mRNA_E-siliculosus-1a_F_contig17190.4007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig17190:1..777- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATACCCGCTACCCCGGTGCTTCAGCCAACGTCGTGGAAACCCGCATCAC
TCAGGTGTTAGAAGATCGTATTGCGGGGGTGGAAGGCATTGAGCTGATTA
CCTCTCAAAGCGAAGATGGCCGCTCTCGCATCGAAATAGAGTTTGGCATT
GATATGAATATCGATGCCGCCGCCAATGATGTTCGCGACCGTATTTCTGG
CGCATTACGTAACCTACCCGATGATGCCGATAACCCTGAAGTCACCAAAG
CGGATAGCAGTGAAGAGATTGTTGTCTGGCTAAGCCTTTCCGGTGAAGAC
TATTCCATCACCGAACTGACCGACTACGCCAACCGCTACCTGGTCGATAG
CCTGTCAGTTCAGCCTGGTGTGGCGCGGGTACGTGTCGGTGGTGGCAGCG
ATTATGCCATGCGCGTCTGGCTGAATCGCAACGCATTAGCCGCCCGAGGC
CTGACCGTTAGCGATATTGAAGATGCCTTACGAGCCGAAAACGTTGAGCT
ACCGGCAGGTTCGATTGAATCAGAAGATCGACAGTTTATTGTGCGGCTAC
CCCGCAGCTTTGCCAGCGCCGATGATTTTAAGCGCCTTGCCATTAATCAG
GGTGATAACGGCTACCTAGTGCGCCTGGGTGATATTGCCAGGGTAGAAGT
TGGTGCAGTGGAAGATCGATCCGTATTTCGCTCTAACGGCGTCCCGATGG
TCGGCCTTGGCATGATCATGCAGTCCACCGCTAATATCATAGAGCTTTCT
GAAGCGGTACAGCAGGAACTGGAACGCGATACCCGCTACCCCGGTGCTTC
AGCCAACGTCGTGGAAACCCGCATCACTCAGGTGTTAGAAGATCGTATTG
CGGGGGTGGAAGGCATTGAGCTGATTACCTCTCAAAGCGAAGATGGCCGC
TCTCGCATCGAAATAGAGTTTGGCATTGATATGAATATCGATGCCGCCGC
CAATGATGTTCGCGACCGTATTTCTGGCGCATTACGTAACCTACCCGATG
ATGCCGATAACCCTGAAGTCACCAAAGCGGATAGCAGTGAAGAGATTGTT
GTCTGGCTAAGCCTTTCCGGTGAAGACTATTCCATCACCGAACTGACCGA
CTACGCCAACCGCTACCTGGTCGATAGCCTGTCAGTTCAGCCTGGTGTGG
CGCGGGTACGTGTCGGTGGTGGCAGCGATTATGCCATGCGCGTCTGGCTG
AATCGCAACGCATTAGCCGCCCGAGGCCTGACCGTTAGCGATATTGAAGA
TGCCTTACGAGCCGAAAACGTTGAGCTACCGGCAGGTTCGATTGAATCAG
AAGATCGACAGTTTATTGTGCGGCTACCCCGCAGCTTTGCCAGCGCCGAT
GATTTTAAGCGCCTTGCCATTAATCAGGGTGATAACGGCTACCTAGTGCG
CCTGGGTGATATTGCCAGGGTAGAAGTTGGTGCAGTGGAAGATCGATCCG
TATTTCGCTCTAACGGCGTCCCGATGGTCGGCCTTGGCATGATCATGCAG
TCCACCGCTAATATCATAGAGCTTTCTGAAGCGGTACAGCAGGAACTGGA
ACGC
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