mRNA_E-siliculosus-1a_F_contig1715.3984.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1715.3984.1
Unique NamemRNA_E-siliculosus-1a_F_contig1715.3984.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1715.3984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1715contigE-siliculosus-1a_F_contig1715:20762..21407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size375
Model size646
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1715.3984.1prot_E-siliculosus-1a_F_contig1715.3984.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1715 20786..21160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928216.9198656-UTR-E-siliculosus-1a_F_contig1715:20761..207851622928216.9198656-UTR-E-siliculosus-1a_F_contig1715:20761..20785Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1715 20762..20785 +
1696318850.3458114-UTR-E-siliculosus-1a_F_contig1715:20761..207851696318850.3458114-UTR-E-siliculosus-1a_F_contig1715:20761..20785Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1715 20762..20785 +
1622928216.9615464-UTR-E-siliculosus-1a_F_contig1715:21160..214071622928216.9615464-UTR-E-siliculosus-1a_F_contig1715:21160..21407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1715 21161..21407 +
1696318850.3672876-UTR-E-siliculosus-1a_F_contig1715:21160..214071696318850.3672876-UTR-E-siliculosus-1a_F_contig1715:21160..21407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1715 21161..21407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928216.9349198-CDS-E-siliculosus-1a_F_contig1715:20785..211601622928216.9349198-CDS-E-siliculosus-1a_F_contig1715:20785..21160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1715 20786..21160 +
1696318850.3597808-CDS-E-siliculosus-1a_F_contig1715:20785..211601696318850.3597808-CDS-E-siliculosus-1a_F_contig1715:20785..21160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1715 20786..21160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1715.3984.1

>prot_E-siliculosus-1a_F_contig1715.3984.1 ID=prot_E-siliculosus-1a_F_contig1715.3984.1|Name=mRNA_E-siliculosus-1a_F_contig1715.3984.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=125bp
MRLLNSKRKPLGQISSKTWPVSRPKDQANFPPRGNHHHGGAVFHHSNRHR
QSLEIKAVPFTNPKYGLPSLYYSTLYPSTLVYHETARFYPTNDYRTACGT
GYKRTRSKKSPLRTGIRLHVFEKL*
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mRNA from alignment at E-siliculosus-1a_F_contig1715:20762..21407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1715.3984.1 ID=mRNA_E-siliculosus-1a_F_contig1715.3984.1|Name=mRNA_E-siliculosus-1a_F_contig1715.3984.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=646bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1715:20762..21407+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCAAATCAAGTGACAACACAGCCATGCGTTTGCTCAACTCAAAAAGGAA
ACCTCTCGGGCAAATCTCTTCGAAAACGTGGCCCGTCTCTCGACCAAAAG
ACCAAGCCAATTTCCCGCCGCGAGGCAACCATCACCACGGAGGAGCAGTA
TTTCACCATTCGAACCGACACCGCCAGTCCCTGGAAATAAAGGCGGTCCC
CTTTACGAACCCCAAATATGGATTGCCTTCTCTCTACTACAGTACATTGT
ATCCATCAACACTTGTATATCACGAAACCGCGCGCTTCTACCCAACAAAC
GATTACCGTACGGCATGCGGCACGGGGTACAAGCGCACGAGAAGCAAGAA
ATCACCTCTTCGTACCGGAATACGACTACATGTATTCGAGAAGCTTTGAA
CCGTTTACCTTACCGGAATAGTATTCCCAGAAGATGTCAAAACAGCAGTC
CTCTCGTCTACGGTAGTGCTCACGAACGGCGACTCAACAACTATTACCGC
AAAGTGCGTCGTGTCACCATGGGGTCGACCGATTTAGATCACCACGTAAG
CACACGTCGAGGGCCTGAACCAGGCGATAGGTGCCAGCATTTGCTTGGGT
ACAACAGCTTCATCAGAGGTCGAAAGAACCTCGCTCGCCATGCCCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1715:20762..21407+

>mRNA_E-siliculosus-1a_F_contig1715.3984.1 ID=mRNA_E-siliculosus-1a_F_contig1715.3984.1|Name=mRNA_E-siliculosus-1a_F_contig1715.3984.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1715:20762..21407+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTTTGCTCAACTCAAAAAGGAAACCTCTCGGGCAAATCTCTTCGAA
AACGTGGCCCGTCTCTCGACCAAAAGACCAAGCCAATTTCCCGCCGCGAG
GCAACCATCACCACGGAGGAGCAGTATTTCACCATTCGAACCGACACCGC
CAGTCCCTGGAAATAAAGGCGGTCCCCTTTACGAACCCCAAATATGGATT
GCCTTCTCTCTACTACAGTACATTGTATCCATCAACACTTGTATATCACG
AAACCGCGCGCTTCTACCCAACAAACGATTACCGTACGGCATGCGGCACG
GGGTACAAGCGCACGAGAAGCAAGAAATCACCTCTTCGTACCGGAATACG
ACTACATGTATTCGAGAAGCTTTGAATGCGTTTGCTCAACTCAAAAAGGA
AACCTCTCGGGCAAATCTCTTCGAAAACGTGGCCCGTCTCTCGACCAAAA
GACCAAGCCAATTTCCCGCCGCGAGGCAACCATCACCACGGAGGAGCAGT
ATTTCACCATTCGAACCGACACCGCCAGTCCCTGGAAATAAAGGCGGTCC
CCTTTACGAACCCCAAATATGGATTGCCTTCTCTCTACTACAGTACATTG
TATCCATCAACACTTGTATATCACGAAACCGCGCGCTTCTACCCAACAAA
CGATTACCGTACGGCATGCGGCACGGGGTACAAGCGCACGAGAAGCAAGA
AATCACCTCTTCGTACCGGAATACGACTACATGTATTCGAGAAGCTTTGA
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