mRNA_E-siliculosus-1a_F_contig1703.3931.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1703.3931.1
Unique NamemRNA_E-siliculosus-1a_F_contig1703.3931.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.160e-84
Identity = 138/216 (63.89%), Postives = 172/216 (79.63%), Query Frame = 1
Query:    4 SWKAGVYMEELVGDLLSESIDLRATSFWSDPAMAEGEHLATPQGAVRGKEWNKAAAVVHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDELGANFISTSS 651
            S +A  ++ + +GDL+  S+DL +T+FWSD  M  GE L+ P GAVR ++W+KAA+VVH LSEAA TSPGDICSWN V V H   D+LLVSGLDHLL+SGRGAGG   GGE+AEL +ACFMGL+SFLA + +VLRV+   +   LNA ARAN+QSAT+TDTPLTDAGLDGTGQV+Q+ID+G+DESSCFF HD++GDH+ HG+YF+E G N   TSS
Sbjct:  192 SVEAEAFISDTLGDLMLASVDLHSTNFWSDQNMGGGEQLSFPGGAVRARDWSKAASVVHELSEAAGTSPGDICSWNRVSVHHAEGDVLLVSGLDHLLHSGRGAGGRSDGGESAELHIACFMGLVSFLASKPEVLRVAPRQSQALLNASARANIQSATVTDTPLTDAGLDGTGQVVQVIDSGVDESSCFFAHDESGDHVPHGHYFEEWGINPPLTSS 407          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 3.540e-82
Identity = 139/221 (62.90%), Postives = 175/221 (79.19%), Query Frame = 1
Query:    4 SWKAGVYMEELVGDLLSESIDLRATSFWSDPAM-AEGEHLATPQGAVRGKEWNKAAAVVHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDELGANFISTSSFGDD 663
            S +A  ++  ++GDL+S S+DL +T+FWSDP M   GEHL++P GAVR ++W KAA+VVH LSEAAST PGDICSWN + V H GDD LLVSGLDHLL+SGRGAGG+ +  E+ EL VACFMGL+SFLAGR +VLRVS   T   LNA AR  +QSA+ TDTPLTDAGLDGTG++IQ+ID+GLDE+SC+F+ DD+G+ + HGYYFDELG   + +SS+  D
Sbjct:  199 SSEAKSFINHMLGDLMSASVDLHSTNFWSDPGMDGAGEHLSSPAGAVRARDWRKAASVVHELSEAASTGPGDICSWNRIFVHHAGDDSLLVSGLDHLLFSGRGAGGSHEE-ESTELHVACFMGLVSFLAGRPEVLRVSPRPTKRVLNAAARGVIQSASATDTPLTDAGLDGTGEIIQVIDSGLDETSCYFI-DDSGEEVDHGYYFDELGRAAVYSSSYSSD 417          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.490e-78
Identity = 130/201 (64.68%), Postives = 165/201 (82.09%), Query Frame = 1
Query:   22 YMEELVGDLLSESIDLRATSFWSDPAMAEGEHLATPQGAVRGKEWNKAAAVVHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDEL 624
            ++ +L+GDL+S S+DL +T+FWSDP MA GEHL++  GAVR ++W+KAA+VVH LSEAA TSPGDICSW+ V ++  GDD LLV+GLDHLL+SGRGAGG+ +  E+ EL VACFMGL+SF AGR +VLRVS  HT   LN  AR  +QSA+ TDTPLTDAGLDGTG+VIQ++DTGLDE+SCFF+ DD G+ + HGY+F+EL
Sbjct:  208 FIIDLLGDLMSASVDLHSTNFWSDPVMAGGEHLSSHGGAVRARDWSKAASVVHELSEAAGTSPGDICSWDEVALIQAGDDSLLVTGLDHLLFSGRGAGGSHEE-ESTELHVACFMGLVSFFAGRPEVLRVSPRHTKRVLNEAARGIIQSASATDTPLTDAGLDGTGEVIQVVDTGLDETSCFFI-DDGGEEVDHGYFFEEL 406          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 254 bits (648), Expect = 2.320e-75
Identity = 131/218 (60.09%), Postives = 167/218 (76.61%), Query Frame = 1
Query:   10 KAGVYMEELVGDLLSESIDLRATSFWSDPAMAEGEHLATPQGAVRGKEWNKAAAVVHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDELGANFISTSSFGDD 663
            +AG+++ EL+ DL+S+SIDL   + WSDP  A GEHL TP GAVR +EW+ AA +VH L+ A  TSPGDICSW+++ + + G+DLLLVSGLDHLL+   GA G+ +  EA ELRVACFMGL+SFL+ R++VLRVS  H    LNA AR  +QSATIT+ PLTDAGLDGTGQVIQ+IDTGLDE+SCFF+ DD G+ + HG+Y++ LG    S+SS  DD
Sbjct:  201 EAGMFIAELLDDLMSDSIDLHGGNVWSDPVAANGEHLTTPAGAVRKREWSMAATLVHQLAVAGRTSPGDICSWDSISMHYAGNDLLLVSGLDHLLHKENGAIGSDE--EATELRVACFMGLVSFLSNRLEVLRVSPRHADRLLNAVARTIIQSATITEAPLTDAGLDGTGQVIQVIDTGLDETSCFFIDDD-GEEVPHGHYYEALGEIIPSSSSARDD 415          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: D7G6L6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L6_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.720e-62
Identity = 115/219 (52.51%), Postives = 147/219 (67.12%), Query Frame = 1
Query:   49 LSESIDLRATSFWS--------DPAMAEG--EHLATPQGAVRGKEWNKAAAVVHGLSEA-ASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDELGANFISTSSFGDDWSF 672
            +SES+D+   SFWS        D A AEG  + L    G V  +EW +AA V+ GL  A    + GD+CSW+ + V+H  DDLL + G+DHLL  GRGAGG  +G EA EL+VACFM LLSFLA R +VLRVS       LNA A  NVQSA +T++P+TDAGLDGTG+VIQI+DTGLD +SCFFV +D G+ +AHG+YF+E+G    + SS+   W F
Sbjct:    1 MSESLDVHGKSFWSSGWSAKLLDEAAAEGAGDSLGGGPGEVLAREWTRAADVLRGLGGAEGGPTIGDVCSWDGLVVVHTDDDLLTMKGMDHLLPEGRGAGGN-EGPEADELQVACFMALLSFLASRPEVLRVSPARAIKLLNAAAYHNVQSANLTESPMTDAGLDGTGEVIQIVDTGLDVNSCFFVDEDGGEGVAHGHYFEEIGVEASALSSWFTSWDF 218          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: D8LBZ2_ECTSI (Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ2_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 3.100e-59
Identity = 115/219 (52.51%), Postives = 147/219 (67.12%), Query Frame = 1
Query:   49 LSESIDLRATSFWS--------DPAMAEG--EHLATPQGAVRGKEWNKAAAVVHGLSEA-ASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDELGANFISTSSFGDDWSF 672
            +SES+D+   SFWS        D A AEG  + L    G V  +EW +AA V+ GL  A    + GD+CSW+ + V+H  DDLL + G+DHLL  GRGAGG  +G EA EL+VACFM LLSFLA R +VLRVS       LNA A  NVQSA +T++P+TDAGLDGTG+VIQI+DTGLD +SCFFV +D G+ +AHG+YF+E+G    + SS+   W F
Sbjct:    1 MSESLDVHGKSFWSSGWSAKLLDEAAAEGAGDSLGGGPGEVLAREWTRAADVLRGLGGAEGGPTIGDVCSWDGLVVVHTDDDLLTMKGMDHLLPEGRGAGGN-EGPEADELQVACFMALLSFLASRPEVLRVSPARAIKLLNAAAYHNVQSANLTESPMTDAGLDGTGEVIQIVDTGLDVNSCFFVDEDGGEGVAHGHYFEEIGVEASALSSWFTSWDF 218          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: D8LQI1_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI1_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 5.440e-58
Identity = 110/215 (51.16%), Postives = 152/215 (70.70%), Query Frame = 1
Query:   10 KAGVYMEELVGDLLSESIDLRATSFWSDPAMAEGEHLATPQGAVRGKEWNKAAAVVHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDELGA-NFISTSS 651
            KA  +++EL+  L S S+DL A + WSD  M  G+HL +  GA+RG+EW++AA +V+  SE+   +P  +C W  V V H  +D+LLV+GLDHLLY GR   G  +  EAAELR+AC+MGL+SFLA R +VL+V+  +  + LNA ARA +QSA++  TPLTDAGLDG+G+VIQIID G++E++CF  H D G  + HGYYFD + + N + TSS
Sbjct:  199 KAHEFIQELLKSLSSPSLDLHAITCWSDLVMKGGDHLFSAAGALRGREWSRAATLVNERSESEQETPSQVCGWEQVVVHHAANDVLLVAGLDHLLYDGREVSGASEE-EAAELRMACYMGLVSFLASRHEVLKVAGWNRKVNLNAAARATIQSASVDSTPLTDAGLDGSGEVIQIIDAGVNETTCFLEHGD-GTEVEHGYYFDFVASSNPLFTSS 411          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 206 bits (525), Expect = 1.040e-57
Identity = 107/176 (60.80%), Postives = 133/176 (75.57%), Query Frame = 1
Query:   10 KAGVYMEELVGDLLSESIDLRATSFWSDPAMAEGEHLATPQGAVRGKEWNKAAAVVHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQII 537
            +AG+++ EL+ DL+S+SIDL   + WSDP  A GEHL TP GAVR +EW+ AA +VH L+ A  TSPGDICSW+++ + H G+DLLLVSGLDHLL+   GA G+ +  EA ELRVACFMGL+SFL+ R++V RVS  H    LNA AR  +QSATIT  PLT AGLDGTGQVIQ+I
Sbjct:  201 QAGMFIAELLDDLMSDSIDLHGGNVWSDPVAANGEHLTTPAGAVRKREWSMAATLVHQLAVAGRTSPGDICSWDSISIHHAGNDLLLVSGLDHLLHKESGAIGSDE--EATELRVACFMGLVSFLSSRLEVSRVSPRHADRLLNAVARTIIQSATITKAPLTAAGLDGTGQVIQVI 374          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 2.720e-57
Identity = 118/232 (50.86%), Postives = 153/232 (65.95%), Query Frame = 1
Query:   13 AGVYMEELVGDLLSESIDLRATSFWS--------DPAMAEG--EHLATPQGAVRGKEWNKAAAVVHGL--SEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDELGANFISTSSFGDDWSF 672
            +G   +E   +L+S+S+D+   SFWS        D A AEG  +      G V  +EW +AA V+ GL  +E   T  GD+CSW+ + V+H  DDLL + G+DHLL  GRGAGG  +G EA EL+VACFM LLSFLA R +VLRVS       LNA A  NVQSA++T++P+TDAGLDGTG+VIQI+DTGLD +SCFFV +D G+ +AHGYYF+E+G    S  S+   W F
Sbjct:  253 SGELTDEWREELMSQSLDVHDKSFWSSGWSAKLPDEAAAEGAGDSSGGGPGEVLAREWTRAADVLRGLGGTEGGPTI-GDVCSWDGLVVVHTDDDLLTMKGMDHLLPEGRGAGGN-EGPEADELKVACFMALLSFLASRPEVLRVSPARAIKLLNAAAYHNVQSASLTESPMTDAGLDGTGEVIQIVDTGLDVNSCFFVDEDGGEGVAHGYYFEEIGVEASSFGSWFTSWDF 482          
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Match: D8LSW0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW0_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 3.900e-44
Identity = 95/202 (47.03%), Postives = 130/202 (64.36%), Query Frame = 1
Query:   13 AGVYMEELVGDLLSESIDLRATSFWSDPAMAEGEHLATPQGAVRGKEWNKAAAVVHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTWKGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSATITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFD 618
            A  ++ +   DL SES+++R  SFWSD      E+  T     R +EW++AAAVV GL+  ++ + G+IC +  +++ HV DDL+LV G++HLL   R           +E R AC+MGLLS LA + +VLRVS   +    NA A A VQSAT T+TPL DAGLDGTG+VIQ++D+GLDE+SCFF  DD G  + HG+ FD
Sbjct:  194 AEAFLRDWHADLTSESVNMRRASFWSDSDADRSEYDVT-----RVREWSRAAAVVDGLASKSARTVGEICGFGKLKLRHVADDLVLVEGMNHLLPGKR---------FPSETRTACYMGLLSQLAAKPEVLRVSPLQSARLHNAVANALVQSATTTETPLLDAGLDGTGEVIQVVDSGLDETSCFFADDD-GLQVEHGFLFD 380          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1703.3931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQT4_9PHAE1.160e-8463.89Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LNG6_ECTSI3.540e-8262.90Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K229_9PHAE2.490e-7864.68Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A2I6U1R2_SACJA2.320e-7560.09Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
D7G6L6_ECTSI1.720e-6252.51Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LBZ2_ECTSI3.100e-5952.51Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculos... [more]
D8LQI1_ECTSI5.440e-5851.16Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A2I6U1S5_SACJA1.040e-5760.80Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A6H5JKA8_9PHAE2.720e-5750.86Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LSW0_ECTSI3.900e-4447.03Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1703contigE-siliculosus-1a_F_contig1703:5851..7182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size705
Model size730
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG1404@1,KOG1114@2759
EggNOG free text desc.tripeptidyl-peptidase activity
Seed eggNOG ortholog2880.D8LNG6
Seed ortholog evalue3.2e-71
Seed ortholog score275.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1703.3931.1prot_E-siliculosus-1a_F_contig1703.3931.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1703 5851..7158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.6400838-CDS-E-siliculosus-1a_F_contig1703:5850..60481622928206.6400838-CDS-E-siliculosus-1a_F_contig1703:5850..6048Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1703 5851..6048 -
1696318846.7636533-CDS-E-siliculosus-1a_F_contig1703:5850..60481696318846.7636533-CDS-E-siliculosus-1a_F_contig1703:5850..6048Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1703 5851..6048 -
1622928206.6507907-CDS-E-siliculosus-1a_F_contig1703:6363..66171622928206.6507907-CDS-E-siliculosus-1a_F_contig1703:6363..6617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1703 6364..6617 -
1696318846.7753654-CDS-E-siliculosus-1a_F_contig1703:6363..66171696318846.7753654-CDS-E-siliculosus-1a_F_contig1703:6363..6617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1703 6364..6617 -
1622928206.662773-CDS-E-siliculosus-1a_F_contig1703:6905..71581622928206.662773-CDS-E-siliculosus-1a_F_contig1703:6905..7158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1703 6906..7158 -
1696318846.784949-CDS-E-siliculosus-1a_F_contig1703:6905..71581696318846.784949-CDS-E-siliculosus-1a_F_contig1703:6905..7158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1703 6906..7158 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.6745653-UTR-E-siliculosus-1a_F_contig1703:7158..71821622928206.6745653-UTR-E-siliculosus-1a_F_contig1703:7158..7182Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1703 7159..7182 -
1696318846.7950077-UTR-E-siliculosus-1a_F_contig1703:7158..71821696318846.7950077-UTR-E-siliculosus-1a_F_contig1703:7158..7182Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1703 7159..7182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1703.3931.1

>prot_E-siliculosus-1a_F_contig1703.3931.1 ID=prot_E-siliculosus-1a_F_contig1703.3931.1|Name=mRNA_E-siliculosus-1a_F_contig1703.3931.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=235bp
MEELVGDLLSESIDLRATSFWSDPAMAEGEHLATPQGAVRGKEWNKAAAV
VHGLSEAASTSPGDICSWNNVRVLHVGDDLLLVSGLDHLLYSGRGAGGTW
KGGEAAELRVACFMGLLSFLAGRIDVLRVSSTHTYLPLNAEARANVQSAT
ITDTPLTDAGLDGTGQVIQIIDTGLDESSCFFVHDDTGDHIAHGYYFDEL
GANFISTSSFGDDWSFFGDDDWWKIGDDDWWNFGD
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mRNA from alignment at E-siliculosus-1a_F_contig1703:5851..7182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1703.3931.1 ID=mRNA_E-siliculosus-1a_F_contig1703.3931.1|Name=mRNA_E-siliculosus-1a_F_contig1703.3931.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1703:5851..7182- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACTCCTGGAAGGCTGGCGTGTACATGGAGGAGTTGGTCGGAGACCTCCT GTCCGAGTCGATAGACCTCCGCGCCACCAGCTTCTGGTCCGATCCTGCGA TGGCGGAGGGGGAGCACCTTGCCACCCCGCAAGGCGCTGTGCGGGGGAAG GAATGGAACAAGGCTGCTGCTGTTGTGCACGGGCTGAGCGAGGCAGCCAG CACATCCCCTGGGGACATTTGCTCCTGGAACAACGTCCGAGTTCTTCATG TTGGAGACGACCTGCTGTTGGTGTCAGGTAGGTTCGGCACCACCACGATT TCCCAGTGCAATAGAGTACATGTGAAGCTCTAGACTCCTTCCCTTCGGCG AAATAAAACTGTTTTGCTGCAGATTCGTGACACACCGTATTCTCTGATGT TTATCTACATCGACACTACAACACGAGTGCAGGTGTGAAGGCGGTACGCG TTGCTCCTCAAAATGGAGCTCGCTTCTTCTCTGGTAGTTGAGCAGCAGCG TGGTCTTTCTCTCTGATTAAGCCATGTAAGTATACCTAGTACAATGTTTT ATGTTCAATCGACAGGTCTGGACCACCTGCTGTACTCAGGGAGGGGCGCG GGGGGAACATGGAAAGGGGGAGAAGCAGCCGAGTTGCGCGTGGCATGTTT CATGGGCCTTCTCTCCTTCCTGGCCGGCCGGATAGACGTCCTTCGAGTCT CCTCGACGCATACGTACCTCCCTCTGAACGCGGAAGCGCGAGCAAACGTC CAAAGCGCCACGATCACCGACACTCCTTTGACGGACGCCGGGTTGGACGG AACGGGCCAAGTGATCCAGGTACGGCTTTTGCTCTGCTCGCAAACAGCGG GAACAATGCCCGGCGCTCATAGTTATCCCAACGCCGCACTCCACGGTGTG ATCATCCCACACCTCATGCAGATCCGTCGACGGAGACAGCTTCAGCAAAA ATAGATCGTGCCTCGCCTTCGGTCAAGCAGCGCCCATAGCGCATTTTACC TTCTACTTCATTTATAACCCGTGTGCGGAGTAGTTCTCGCAGCCAACACT CTTTCTACCGCGTATTTGTCTCAAGGTTCTGAACCCCCCTTTTCAGTCAG CTGACACATCGGGTCTTGATGCCTGTTCCACCAGATTATCGACACCGGGC TCGACGAGAGCTCTTGCTTCTTTGTCCACGACGATACAGGGGATCATATC GCGCACGGGTACTACTTCGACGAGCTGGGCGCCAACTTTATCTCGACCTC GTCCTTCGGCGACGACTGGTCGTTCTTCGGTGACGACGACTGGTGGAAAA TCGGTGACGACGACTGGTGGAACTTCGGCGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1703:5851..7182-

>mRNA_E-siliculosus-1a_F_contig1703.3931.1 ID=mRNA_E-siliculosus-1a_F_contig1703.3931.1|Name=mRNA_E-siliculosus-1a_F_contig1703.3931.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1703:5851..7182- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGGAGTTGGTCGGAGACCTCCTGTCCGAGTCGATAGACCTCCGCGC
CACCAGCTTCTGGTCCGATCCTGCGATGGCGGAGGGGGAGCACCTTGCCA
CCCCGCAAGGCGCTGTGCGGGGGAAGGAATGGAACAAGGCTGCTGCTGTT
GTGCACGGGCTGAGCGAGGCAGCCAGCACATCCCCTGGGGACATTTGCTC
CTGGAACAACGTCCGAGTTCTTCATGTTGGAGACGACCTGCTGTTGGTGT
CAGATGGAGGAGTTGGTCGGAGACCTCCTGTCCGAGTCGATAGACCTCCG
CGCCACCAGCTTCTGGTCCGATCCTGCGATGGCGGAGGGGGAGCACCTTG
CCACCCCGCAAGGCGCTGTGCGGGGGAAGGAATGGAACAAGGCTGCTGCT
GTTGTGCACGGGCTGAGCGAGGCAGCCAGCACATCCCCTGGGGACATTTG
CTCCTGGAACAACGTCCGAGTTCTTCATGTTGGAGACGACCTGCTGTTGG
TGTCAGGTCTGGACCACCTGCTGTACTCAGGGAGGGGCGCGGGGGGAACA
TGGAAAGGGGGAGAAGCAGCCGAGTTGCGCGTGGCATGTTTCATGGGCCT
TCTCTCCTTCCTGGCCGGCCGGATAGACGTCCTTCGAGTCTCCTCGACGC
ATACGTACCTCCCTCTGAACGCGGAAGCGCGAGCAAACGTCCAAAGCGCC
ACGATCACCGACACTCCTTTGACGGACGCCGGGTTGGACGGAACGGGCCA
AGTGATCCAGGTCTGGACCACCTGCTGTACTCAGGGAGGGGCGCGGGGGG
AACATGGAAAGGGGGAGAAGCAGCCGAGTTGCGCGTGGCATGTTTCATGG
GCCTTCTCTCCTTCCTGGCCGGCCGGATAGACGTCCTTCGAGTCTCCTCG
ACGCATACGTACCTCCCTCTGAACGCGGAAGCGCGAGCAAACGTCCAAAG
CGCCACGATCACCGACACTCCTTTGACGGACGCCGGGTTGGACGGAACGG
GCCAAGTGATCCAGATTATCGACACCGGGCTCGACGAGAGCTCTTGCTTC
TTTGTCCACGACGATACAGGGGATCATATCGCGCACGGGTACTACTTCGA
CGAGCTGGGCGCCAACTTTATCTCGACCTCGTCCTTCGGCGACGACTGGT
CGTTCTTCGGTGACGACGACTGGTGGAAAATCGGTGACGACGACTGGTGG
AACTTCGGCGACATTATCGACACCGGGCTCGACGAGAGCTCTTGCTTCTT
TGTCCACGACGATACAGGGGATCATATCGCGCACGGGTACTACTTCGACG
AGCTGGGCGCCAACTTTATCTCGACCTCGTCCTTCGGCGACGACTGGTCG
TTCTTCGGTGACGACGACTGGTGGAAAATCGGTGACGACGACTGGTGGAA
CTTCGGCGAC
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