mRNA_E-siliculosus-1a_F_contig1702.3924.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1702.3924.1 vs. uniprot
Match: D7FJW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW3_ECTSI) HSP 1 Score: 822 bits (2123), Expect = 4.520e-296 Identity = 451/497 (90.74%), Postives = 467/497 (93.96%), Query Frame = 1
Query: 352 MTEVLRGTRAVDSILDTDRFKDRKMTFWHGMMIKKTSKHRIDNIGVEMLPNQCRSCIDIAQRHIRESDATTTSGEADPDTPGSSSDEATMASPEEVAIVFDMFNSVPEVTSLDSIYKNQLFRELRLKHFAAGSTIFQQWEHQDKICVILRGRVQLTSKHSGVLFQAGTCNV---IGSIEPIVGMLTARCEAYTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTLDDDDLNTVETLFTTATLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEEDADSRSGPPXXXXXXXXXXXXXXXXSSADVETRLKHFDLGEIGPKDMLGENGMLKHLDTSSVFSTTPAPAATETVALPAIVSNQEDAQLLSRPTETPDDTTDHGASTPDGDAGDASPPPADAATDRAGSSRVATMGPKKPAYIISAAASRGTAEVYVANVYDLKKLQTDSFRYCWKTAQRLHQARAQAWGVGALAQQLQRQNEWEARKREVLSQI 1833
MTEVLRGTRAV+SILDT+RFKDRKMTFWHGM+IKKTSK+RIDNIGVEMLPN+CRSCIDIA+RHIRESDATTTSGEAD DTPGSSSDEATMASPEEVAIVFDMFNSVPEVTSLDSIYK QLFRE +L+HFAAGSTIF+QWEHQDKICVILRGRV LTSKHSGVLFQAGTCNV IGSIEPIVGMLTARCEAYTTVLCLGSD FAAVVNDSVCAERVAKKAFLKCSAVFSTL+DDDLNTVETLFTT TLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEE XXXXXXXXXXXXXXXX SADVETRLKHFDLGEIGPKDMLGENGMLKHLDTSS FSTTP PAATETVALPAI S+QEDAQ LS+PTETP DTTDHGASTPD D GDASPP ADAATDRAGSSRVAT+GP+KPAYIISAAAS GTAEVYVANVYDLKKLQTDSFRYCWKTAQRLHQARAQAWGV ALAQQL+RQNEW+ARKR VLSQI
Sbjct: 1 MTEVLRGTRAVESILDTERFKDRKMTFWHGMVIKKTSKYRIDNIGVEMLPNRCRSCIDIAERHIRESDATTTSGEADLDTPGSSSDEATMASPEEVAIVFDMFNSVPEVTSLDSIYKKQLFREFQLRHFAAGSTIFRQWEHQDKICVILRGRVHLTSKHSGVLFQAGTCNVGEVIGSIEPIVGMLTARCEAYTTVLCLGSDSFAAVVNDSVCAERVAKKAFLKCSAVFSTLNDDDLNTVETLFTTVTLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEEXXXXXXXXXXXXXXXXXXXXXXXXXXSADVETRLKHFDLGEIGPKDMLGENGMLKHLDTSSAFSTTPPPAATETVALPAIASSQEDAQHLSQPTETPGDTTDHGASTPDWDTGDASPPSADAATDRAGSSRVATIGPRKPAYIISAAASGGTAEVYVANVYDLKKLQTDSFRYCWKTAQRLHQARAQAWGVEALAQQLRRQNEWDARKRGVLSQI 497
BLAST of mRNA_E-siliculosus-1a_F_contig1702.3924.1 vs. uniprot
Match: A0A6H5KSV6_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV6_9PHAE) HSP 1 Score: 728 bits (1880), Expect = 1.070e-259 Identity = 395/493 (80.12%), Postives = 412/493 (83.57%), Query Frame = 1
Query: 355 TEVLRGTRAVDSILDTDRFKDRKMTFWHGMMIKKTSKHRIDNIGVEMLPNQCRSCIDIAQRHIRESDATTTSGEADPDTPGSSSDEATMASPEEVAIVFDMFNSVPEVTSLDSIYKNQLFRELRLKHFAAGSTIFQQWEHQDKICVILRGRVQLTSKHSGVLFQAGTCNVIGSIEPIVGMLTARCEAYTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTLDDDDLNTVETLFTTATLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEEDADSRSGPPXXXXXXXXXXXXXXXXSSADVETRLKHFDLGEIGPKDMLGENGMLKHLDTSSVFSTTPAPAATETVALPAIVSNQEDAQLLSRPTETPDDTTDHGASTPDGDAGDASPPPADAATDRAGSSRVATMGPKKPAYIISAAASRGTAEVYVANVYDLKKLQTDSFRYCWKTAQRLHQARAQAWGVGALAQQLQRQNEWEARKREVLSQI 1833
T+VLRGTRAVDSILDTDRFKDRK+TFWHGMMIKKT KHRIDNIGV +LP+QCRSCI+I QRHIRE ADPDTPGSSSDE TMASPEEVAIVFDMFNSVPEVTSLDSIYK QLFRELRLKHFA GSTIF+QWEHQ+K VIGSI+PIVGMLTARCE YTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTL+DDDLNTVETLFT TLHDNQVIC EGSRVDHVYVVKRGFLRILKAFLPEEDAD RSGPP S ADVETRLK+FDLGEIGPKDMLGENGMLKHLDTS V STTPAPAATE+V LPAI S+QEDAQ LS+PT+ DT DHGAST DGDAGDASPP ADAATD AGS RVATMG +KPAYIISAAAS GTAEVYVANVYDLKKLQTDSF YCWKTAQRLHQARAQAWG GALAQQL+R+NEWEARK EVLSQI
Sbjct: 4 TQVLRGTRAVDSILDTDRFKDRKLTFWHGMMIKKTFKHRIDNIGVGILPDQCRSCINIVQRHIRE---------ADPDTPGSSSDETTMASPEEVAIVFDMFNSVPEVTSLDSIYKKQLFRELRLKHFATGSTIFRQWEHQNK--------------------------VIGSIKPIVGMLTARCETYTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTLNDDDLNTVETLFTAITLHDNQVICMEGSRVDHVYVVKRGFLRILKAFLPEEDADCRSGPPSHASTVAAGAASARRSSLADVETRLKYFDLGEIGPKDMLGENGMLKHLDTSLVLSTTPAPAATESVTLPAIASSQEDAQHLSQPTDARADTIDHGASTLDGDAGDASPPSADAATDGAGSPRVATMGLRKPAYIISAAASGGTAEVYVANVYDLKKLQTDSFCYCWKTAQRLHQARAQAWGAGALAQQLRRRNEWEARKGEVLSQI 461
BLAST of mRNA_E-siliculosus-1a_F_contig1702.3924.1 vs. uniprot
Match: D8LBQ9_ECTSI (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ9_ECTSI) HSP 1 Score: 113 bits (282), Expect = 1.160e-22 Identity = 69/186 (37.10%), Postives = 105/186 (56.45%), Query Frame = 1
Query: 646 VFDMFNSVPEVTSLDSIYKNQLFRELRLKHFAAGSTIFQQWEHQDKICVILRGRVQLTSKHS-GVLFQAGTCN---VIGSIEPIVGMLTARCEAYTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTLDDDDLNTVETLFTTATLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEED 1191
VFD+ +VP + SLD +++ +L L L + G +F+Q + Q+ + +IL GR+ + S GV+ G N VIGSI P + TA C T+L L F +ND V KK F + ++F L + DL+ + ++F TL V+C+EG RVD++Y+V+RG LR+LKAF+P D
Sbjct: 52 VFDLLGAVPLIGSLDPVFRRKLLWMLDLANRQEGQILFRQGDKQETLWLILDGRIGVRSTDKQGVVHYTGEFNSGHVIGSILPEKRLATAICLEQCTLLQLDRATFLQALNDPEAQRAVVKKNFFRSVSLFKGLGERDLDRLVSVFHHTTLEAGDVLCREGERVDYLYLVQRGNLRLLKAFVPLPD 237
BLAST of mRNA_E-siliculosus-1a_F_contig1702.3924.1 vs. uniprot
Match: A0A6H5JUG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG7_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 5.540e-17 Identity = 67/228 (29.39%), Postives = 104/228 (45.61%), Query Frame = 1
Query: 646 VFDMFNSVPEVTSLDSIYKNQLFRELRLKHFAAGSTIFQQWEHQDKICVILRGRVQLTSKHS-GVLFQAGTCN---------------------------------------------VIGSIEPIVGMLTARCEAYTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTLDDDDLNTVETLFTTATLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEED 1191
VFD+ +VP + SLD +++ +L L L + G +F+Q + Q+ + +IL GR+ + S GV+ G N V+GSI P + T C T+L L F +ND V KK F + ++F L + DL+ + ++F TL V+C+EG RVD++Y+V+RG LR+LKAF+P D
Sbjct: 52 VFDLLGAVPLIRSLDPVFRRRLLWMLDLANRQEGQILFRQGDKQEALWLILDGRIGVRSTDKQGVVHHTGEFNSGHVENLNRVVRVWRADHGFVGWSERVGSTDGKSPQLSQTPPSTQVVGSILPEKRLATVICLEQCTLLQLDRATFLQALNDPEAQRAVVKKNFFRSVSLFKGLGERDLDRLVSVFHHTTLEAGDVLCREGERVDYLYLVQRGNLRLLKAFVPLPD 279 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1702.3924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1702.3924.1 >prot_E-siliculosus-1a_F_contig1702.3924.1 ID=prot_E-siliculosus-1a_F_contig1702.3924.1|Name=mRNA_E-siliculosus-1a_F_contig1702.3924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=612bp MLGNHVPSAGNAADVPTKQVSRAAPQAPAVRRNTGGDTHRQSFALRKATLback to top mRNA from alignment at E-siliculosus-1a_F_contig1702:5317..8688+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1702.3924.1 ID=mRNA_E-siliculosus-1a_F_contig1702.3924.1|Name=mRNA_E-siliculosus-1a_F_contig1702.3924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1702:5317..8688+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1702:5317..8688+ >mRNA_E-siliculosus-1a_F_contig1702.3924.1 ID=mRNA_E-siliculosus-1a_F_contig1702.3924.1|Name=mRNA_E-siliculosus-1a_F_contig1702.3924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1702:5317..8688+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |