mRNA_E-siliculosus-1a_F_contig16995.3908.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16995.3908.1
Unique NamemRNA_E-siliculosus-1a_F_contig16995.3908.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: A0A2D9B4X7_ALTSX (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2D9B4X7_ALTSX)

HSP 1 Score: 357 bits (916), Expect = 2.500e-117
Identity = 185/267 (69.29%), Postives = 220/267 (82.40%), Query Frame = 1
Query:    1 LDEGIKDEPDNWLIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYNYGTDELDVTEEEEDFDWKEDVESIEEIDIKNK-----DKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            + EGI+DE + WL  YYQ+LTQTAKIIRLDVQ SQDAYKLFETINNRGLRLS+TDILKNFILGHAAKIG +KL  VK+ WA+LIIALDG+++DDFFRQYIS +YTRKIS TK+IE+FKK YFKRV +VDKLGEYLYNYGT E      EED D ++D E IEEI ++ +     DK++I  +L  I+NAAKCYS IW+S FEN +IN+ IDELKAIRSRP+YIFLMHFLQ+N N +KEK+ VL M  TLMLRRH+TGQ+TAY ++IF
Sbjct:  160 IHEGIQDEEEGWLKSYYQRLTQTAKIIRLDVQQSQDAYKLFETINNRGLRLSATDILKNFILGHAAKIGADKLRLVKDQWAELIIALDGINSDDFFRQYISGIYTRKISSTKLIEEFKKNYFKRVLDVDKLGEYLYNYGTPE------EEDLD-EDDYEEIEEIQLEAELNDEHDKIEINEYLADIVNAAKCYSKIWHSTFENQKINNKIDELKAIRSRPSYIFLMHFLQENGNTLKEKLKVLEMCATLMLRRHMTGQSTAYNDDIF 419          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: A0A519TVN7_9SPHI (DUF262 domain-containing protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519TVN7_9SPHI)

HSP 1 Score: 293 bits (751), Expect = 1.600e-92
Identity = 152/265 (57.36%), Postives = 199/265 (75.09%), Query Frame = 1
Query:    1 LDEGIKDEPDNWLIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYNYGTDEL-DVTEEEEDFDWK--EDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            +++   ++ D W+  Y+QKL  TAKIIRLDVQ +QDAYKLFETINNRGL+LS TDILKNFILGHAAKI   KL EVK +WADLIIALDG+ TDDFFRQY++SVYTRKI+  K+IE+FKK YFK V +VDKLGEY YN G  E  D+ +E+ED + +   D+E  EE  +    ++DI+ +L +I+NA KCYS IWYSNF++ ++N  + +L+A+RS P+YIFLMH+LQ +    KEK  VL  I T+MLRRH+  + T+  ++IF
Sbjct:  161 INDAYDEKGDEWINGYFQKLIYTAKIIRLDVQQAQDAYKLFETINNRGLKLSVTDILKNFILGHAAKISETKLEEVKTLWADLIIALDGIPTDDFFRQYVTSVYTRKITVNKLIEEFKKHYFKNVKDVDKLGEYRYNNGAGESEDIYDEDEDTNEEPLNDLEQEEEEIVLTGKRIDISDYLREIVNAGKCYSKIWYSNFDDKKLNKRLQDLQAVRSFPSYIFLMHYLQTDTPK-KEKYKVLEFITTVMLRRHICSRRTSENDDIF 424          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: I3Z6K8_BELBD (Uncharacterized protein n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) TaxID=866536 RepID=I3Z6K8_BELBD)

HSP 1 Score: 282 bits (722), Expect = 3.080e-88
Identity = 148/264 (56.06%), Postives = 198/264 (75.00%), Query Frame = 1
Query:    1 LDEGIKDEPDNWLIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYNYGTDELDVTEEEEDFDWKEDV-ESIEE-IDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            +++ IKDE + WL  +  KL  TAKIIRLDV  +QDAYKLFETINNRGL+LS+TDILKNFILGHAAKI  +KLN  +E+W++LII LDG+ TDDFFRQY+  +YTRKIS +K++E+FKK+YFK+V EVDKLGE+ YNYGT  ++  E ++D +  +++ ES +E  +  + +++DI  +L  IL AA CYS IW   F + +IN  I +L+ IRS P+YIFLMH+LQ  E   K+   VL++IG  MLRRHVT Q+TAY ++IF
Sbjct:  161 IEDAIKDEGEVWLDTFLSKLIHTAKIIRLDVMQAQDAYKLFETINNRGLQLSATDILKNFILGHAAKISEDKLNGAREVWSELIIQLDGIPTDDFFRQYVCGLYTRKISSSKLVEEFKKDYFKKVQEVDKLGEFRYNYGT--IETAEFDDDSELYDEISESHDEPTEYDHIERIDILNYLKSILKAASCYSKIWNLKFSDKKINQRIADLQDIRSFPSYIFLMHYLQM-ELPKKDVYKVLDLIGVTMLRRHVTSQSTAYNDDIF 421          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: UPI00191F8A4B (DUF262 domain-containing HNH endonuclease family protein n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191F8A4B)

HSP 1 Score: 267 bits (683), Expect = 1.890e-82
Identity = 137/264 (51.89%), Postives = 199/264 (75.38%), Query Frame = 1
Query:    1 LDEGIKDEPDNWLIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLY--NYGTDELDVTEEEEDFDWKEDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            ++E +++E ++WL D+Y KL  TAKIIRLDVQ ++DAYKLFETINNRGL+LS+TDILKNFILGHAAKI + KLN+VKEIW+++I  LDG+ TDDFFRQYI  VYT +I+++++IE FKK+Y  +V++V+ +GEY Y  +Y ++E    +++ED D  ++++S E   + N  +VDIT++L +ILN AK Y+ +W  +F   ++NS + +L+ I+S P YIFLM FLQ  +  I+EK+ VLN+I  LMLRRH+  + T+  + IF
Sbjct:  159 INERLEEEGESWLEDFYNKLVHTAKIIRLDVQQARDAYKLFETINNRGLKLSATDILKNFILGHAAKISDHKLNDVKEIWSNIITTLDGIPTDDFFRQYICGVYTTRITQSRLIEYFKKDYLSKVDKVELIGEYAYYADYYSNEEITDDDDEDVDLDDNIKSKE---LSNDSRVDITIYLKEILNCAKTYAGVWNLSFSEDKLNSKLKDLRDIKSFPTYIFLMRFLQ-TDKPIQEKLLVLNLILILMLRRHICRRRTSENDIIF 418          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: A0A1X7J6R6_9BACT (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1X7J6R6_9BACT)

HSP 1 Score: 265 bits (678), Expect = 1.180e-81
Identity = 143/268 (53.36%), Postives = 190/268 (70.90%), Query Frame = 1
Query:    1 LDEGIKDEPDNWLIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYNYGTDELDVTEEEEDFDWKEDVESIEEIDIKNK------DKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            +   I +E + WL  +Y KLT TAKIIRLDVQ +QDAYKLFETINNRGLRLS+TDILKNFILGHAAKIG +KL EVKE W+ LI  LDG+ TDDFFRQYISS+YTR+++++K+IE FK++Y  +V+ VD +GEY Y   +D  +  EE  D   +++VE   E   K+K       ++DIT ++ QIL+ A+ YSNIW   F+  ++N  + +L  I+S P YIFLMHFLQ+ +  + EK+ VL+MI  LMLRRHV  + T+  + IF
Sbjct:  159 ISNRINEEGEEWLDKFYNKLTHTAKIIRLDVQQAQDAYKLFETINNRGLRLSATDILKNFILGHAAKIGKQKLEEVKEQWSSLITTLDGIPTDDFFRQYISSIYTRRVTKSKLIEYFKEDYLNKVDNVDLIGEYAYY--SDYYNGAEESNDP--EDEVEEAPEDQPKSKKVKNSHSRIDITNYIQQILSCAEVYSNIWNKTFDEEKLNKKLRDLSDIKSFPTYIFLMHFLQRGKT-LNEKLEVLDMISALMLRRHVCARRTSENDIIF 421          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: UPI001AE0DA08 (DUF262 domain-containing protein n=1 Tax=Chryseobacterium sp. RR2-3-20 TaxID=2787626 RepID=UPI001AE0DA08)

HSP 1 Score: 265 bits (677), Expect = 1.820e-81
Identity = 141/266 (53.01%), Postives = 192/266 (72.18%), Query Frame = 1
Query:   13 IKDEPDNWLIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYN--------YGTDELDVTEEEEDFDWKEDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            I  + ++WL D+Y+KL  TAKIIRLDVQ +QDAYKLFETINNRGL LS+TDILKNFILGHAAK+G EKL EVKE+W+ +I++LDG+STDDFFRQYISSVY RKI++T +I+ FKK+YFK+V  V  LGEYLYN           DE+D      D   K  + ++E+     +D++D+  +L +I+N A  YS I+   F + +IN+ + +L AIRS P+YIFLMHF+QK+ +   E+  +L+M+G +MLRRHV  + T+  ++IF
Sbjct:  165 ISQDGESWLTDFYRKLVHTAKIIRLDVQQAQDAYKLFETINNRGLPLSATDILKNFILGHAAKMGVEKLEEVKELWSQVIVSLDGISTDDFFRQYISSVYNRKITKTNLIDAFKKDYFKKVKNVHLLGEYLYNEEEKDSTEINEDEIDEETINTDNSTKVIIGNVEQAS-NEEDRIDLADYLKKIVNCALTYSKIFNKKFPSDKINAKLRDLAAIRSFPSYIFLMHFMQKSFSE-SEQFRMLDMVGAIMLRRHVCERRTSENDDIF 428          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: UPI000DEB9FE0 (DUF262 domain-containing HNH endonuclease family protein n=1 Tax=Aquiflexum aquatile TaxID=2249427 RepID=UPI000DEB9FE0)

HSP 1 Score: 194 bits (494), Expect = 1.250e-54
Identity = 109/248 (43.95%), Postives = 161/248 (64.92%), Query Frame = 1
Query:   46 YYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEK-LNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYNYGTDELDVTEEEEDFDWKEDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            ++ KLT  A +IRLDV  +QDAYKLFETINNRGL+LS TDI+KNF+LGHAAKI  ++ L +VKE+W+++I+ LD + TDDF RQ I S+  RK++ T ++ +FKK Y K + + + LGE+  +Y +D+  + ++ ++ +  E  ES EE D   + ++ I   L  I   A  Y  I +  F   ++N  I  L  I S+P YIFLMHFL+ ++   K K+ VL  + TLMLRRH+  + T+  ++IF
Sbjct:  173 FFYKLTNVAVVIRLDVGMAQDAYKLFETINNRGLKLSPTDIIKNFLLGHAAKINQDQTLEKVKELWSNIIMDLDEIDTDDFLRQLICSLLHRKVTMTMLVPEFKKFYLKNIEKAELLGEF--DYFSDDSGIEDDLDEVELNE-RESTEE-DSNIRTRISIIELLQIIRTLALSYRKITFEEFPRVKLNRRIGNLNKILSKPTYIFLMHFLKNDDYTEKTKLEVLKFLETLMLRRHICERRTSENDDIF 416          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: UPI0003FE6653 (DUF262 domain-containing HNH endonuclease family protein n=1 Tax=Daejeonella oryzae TaxID=1122943 RepID=UPI0003FE6653)

HSP 1 Score: 194 bits (493), Expect = 1.600e-54
Identity = 111/249 (44.58%), Postives = 161/249 (64.66%), Query Frame = 1
Query:   46 YYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEK-LNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEY-LYNYGTDELDVTEEEEDFDWKEDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            +Y KLT TA IIRLDV  +QDAYKLFETINNRGLRL++TD++KNF+LGHAAKI ++  L++VK +W+++I  LD L +DDF R ++ +    K+S +K+I +FKK Y + V   D LGEY  Y+YG     V +++ED     DVE+    +    +K+ I  FL  + + ++ Y  I    F++ +IN  I  L  I S+P+YIFLM+FLQ  +   K K+ VL  + +LMLRRH+    T+  ++IF
Sbjct:  173 FYFKLTNTAVIIRLDVGMAQDAYKLFETINNRGLRLTATDVIKNFLLGHAAKINSDHTLDKVKSLWSEIITNLDQLDSDDFLRHFMCATLKHKLSMSKLIYEFKKHYLRNVENADLLGEYGYYDYG-----VQDDDED-----DVETGSNSEDTISNKISIIEFLTGLCHLSETYKQISKETFKDVKINRRISNLNNILSKPSYIFLMYFLQDPKYVQKTKLQVLEYLESLMLRRHICENRTSDNDDIF 411          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: UPI000C06A1C3 (DUF262 domain-containing HNH endonuclease family protein n=2 Tax=Bacillaceae TaxID=186817 RepID=UPI000C06A1C3)

HSP 1 Score: 193 bits (491), Expect = 3.460e-54
Identity = 112/251 (44.62%), Postives = 153/251 (60.96%), Query Frame = 1
Query:   37 LIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYL-YNYGTDELDVTEEEEDFDWKEDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            L ++  KLT    +IRLDV  ++DAYKLFETINNRGL+LS TDI+KNF+LGHA+ I    L EVK  W ++II LDG+ TDDFFRQY+S +  +KI+ + ++ +FK  YF  V E + L E++ Y   TDE D    +ED       E  EEI + +  K+ IT F  ++ NA+  Y  I   +FE+   N  +  L  I+S P+ IFL+   Q+N    K+KV +L +I T MLRRHV    TA  + IF
Sbjct:  170 LYEFVHKLTNNTFVIRLDVADAKDAYKLFETINNRGLKLSPTDIIKNFLLGHASLIEENTLEEVKRYWTEVIINLDGIKTDDFFRQYLSYLLKKKITASNIVVEFKNLYFNTVKEAENLNEFIVYEDLTDETDDDVSDEDLV----TEVQEEIIVNHTHKISITEFAKRLRNASNIYKQIRNQSFESKVFNRHLRNLTMIKSFPSNIFLLDLFQRNIKE-KDKVHILKLIETFMLRRHVCEYRTAELDTIF 415          
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Match: UPI000BF9A382 (DUF262 domain-containing HNH endonuclease family protein n=1 Tax=Priestia megaterium TaxID=1404 RepID=UPI000BF9A382)

HSP 1 Score: 191 bits (484), Expect = 3.300e-53
Identity = 112/250 (44.80%), Postives = 154/250 (61.60%), Query Frame = 1
Query:   37 LIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLRLSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYISSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYNYGTDELDVTEEEEDFDWKEDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQINSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHVTGQTTAYKNEIF 786
            L++++ KL      IRLDV  ++DAYKLFETINNRGL LS TDI+KNF+LGH++ I ++ L +VK  W +LII LDG++TDDFFRQY+SS+  RKI+ + +I++FKK YF  V E + L E+   Y +  L+  EEE +           EI  KN DKV I  F   + +AAK Y  +   +F N  +N  +  L  I+S PAYIFL+   Q++    K K+ +L +I T MLRRHV    T   + IF
Sbjct:  170 LLEFHYKLVSNTYTIRLDVASAKDAYKLFETINNRGLSLSPTDIIKNFLLGHSSLISDDTLGKVKGYWTELIINLDGINTDDFFRQYLSSILKRKITGSIIIDEFKKYYFNSVIEAENLNEFS-QYESLNLETDEEELEDTSVXXXXXXXEIKEKN-DKVSIVKFAQNLRDAAKIYGYMRNQSFSNHTVNKHLKNLTKIKSFPAYIFLLDLFQRDVEETK-KIEILKLIETFMLRRHVCEYRTGELDAIF 416          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16995.3908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9B4X7_ALTSX2.500e-11769.29Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A519TVN7_9SPHI1.600e-9257.36DUF262 domain-containing protein n=1 Tax=Pedobacte... [more]
I3Z6K8_BELBD3.080e-8856.06Uncharacterized protein n=1 Tax=Belliella baltica ... [more]
UPI00191F8A4B1.890e-8251.89DUF262 domain-containing HNH endonuclease family p... [more]
A0A1X7J6R6_9BACT1.180e-8153.36Uncharacterized conserved protein, contains ParB-l... [more]
UPI001AE0DA081.820e-8153.01DUF262 domain-containing protein n=1 Tax=Chryseoba... [more]
UPI000DEB9FE01.250e-5443.95DUF262 domain-containing HNH endonuclease family p... [more]
UPI0003FE66531.600e-5444.58DUF262 domain-containing HNH endonuclease family p... [more]
UPI000C06A1C33.460e-5444.62DUF262 domain-containing HNH endonuclease family p... [more]
UPI000BF9A3823.300e-5344.80DUF262 domain-containing HNH endonuclease family p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16995contigE-siliculosus-1a_F_contig16995:15..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size786
Model size786
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelCytophagia
COG Functional cat.S
EggNOG OGs47WZN@768503,4PA90@976,COG1479@1,COG1479@2
EggNOG free text desc.Protein of unknown function (DUF1524)
Seed eggNOG ortholog866536.Belba_2313
Seed ortholog evalue4.1e-75
Seed ortholog score288.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928196.471347-CDS-E-siliculosus-1a_F_contig16995:14..8001622928196.471347-CDS-E-siliculosus-1a_F_contig16995:14..800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16995 15..800 +
1696318843.5902934-CDS-E-siliculosus-1a_F_contig16995:14..8001696318843.5902934-CDS-E-siliculosus-1a_F_contig16995:14..800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16995 15..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16995.3908.1prot_E-siliculosus-1a_F_contig16995.3908.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16995 15..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16995.3908.1

>prot_E-siliculosus-1a_F_contig16995.3908.1 ID=prot_E-siliculosus-1a_F_contig16995.3908.1|Name=mRNA_E-siliculosus-1a_F_contig16995.3908.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=262bp
LDEGIKDEPDNWLIDYYQKLTQTAKIIRLDVQHSQDAYKLFETINNRGLR
LSSTDILKNFILGHAAKIGNEKLNEVKEIWADLIIALDGLSTDDFFRQYI
SSVYTRKISRTKVIEDFKKEYFKRVNEVDKLGEYLYNYGTDELDVTEEEE
DFDWKEDVESIEEIDIKNKDKVDITVFLNQILNAAKCYSNIWYSNFENAQ
INSGIDELKAIRSRPAYIFLMHFLQKNENNIKEKVSVLNMIGTLMLRRHV
TGQTTAYKNEIF
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mRNA from alignment at E-siliculosus-1a_F_contig16995:15..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16995.3908.1 ID=mRNA_E-siliculosus-1a_F_contig16995.3908.1|Name=mRNA_E-siliculosus-1a_F_contig16995.3908.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=786bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16995:15..800+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTAGATGAGGGTATAAAAGACGAGCCAGATAACTGGCTCATAGACTACTA TCAAAAACTTACTCAGACAGCTAAAATTATACGTCTTGATGTCCAGCATT CACAAGATGCTTACAAACTATTTGAAACTATTAATAATCGCGGATTAAGG CTGTCTTCTACAGATATCCTGAAAAACTTCATTTTGGGTCATGCAGCCAA GATTGGTAATGAAAAATTAAATGAAGTAAAAGAAATTTGGGCCGATTTGA TTATTGCTTTAGATGGATTATCAACAGATGACTTTTTTCGACAATATATT TCAAGTGTTTACACTAGAAAAATATCTAGAACGAAGGTAATAGAAGATTT TAAAAAGGAGTATTTCAAAAGAGTAAATGAGGTAGATAAACTTGGTGAGT ATTTATACAATTATGGTACTGATGAATTAGATGTTACAGAGGAAGAAGAA GATTTTGATTGGAAGGAAGATGTAGAATCGATTGAGGAAATCGACATAAA AAACAAGGATAAAGTCGACATAACGGTTTTTCTGAATCAGATTTTAAATG CTGCTAAGTGCTACTCAAATATTTGGTATTCTAATTTTGAAAATGCTCAA ATAAATAGTGGAATTGATGAATTGAAAGCTATTAGATCTAGACCAGCTTA TATCTTTTTAATGCATTTCTTACAGAAAAACGAAAACAATATTAAAGAAA AAGTAAGCGTACTAAATATGATAGGTACATTAATGCTTAGAAGACATGTT ACAGGACAAACCACAGCCTATAAAAATGAAATATTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16995:15..800+

>mRNA_E-siliculosus-1a_F_contig16995.3908.1 ID=mRNA_E-siliculosus-1a_F_contig16995.3908.1|Name=mRNA_E-siliculosus-1a_F_contig16995.3908.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16995:15..800+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTAGATGAGGGTATAAAAGACGAGCCAGATAACTGGCTCATAGACTACTA
TCAAAAACTTACTCAGACAGCTAAAATTATACGTCTTGATGTCCAGCATT
CACAAGATGCTTACAAACTATTTGAAACTATTAATAATCGCGGATTAAGG
CTGTCTTCTACAGATATCCTGAAAAACTTCATTTTGGGTCATGCAGCCAA
GATTGGTAATGAAAAATTAAATGAAGTAAAAGAAATTTGGGCCGATTTGA
TTATTGCTTTAGATGGATTATCAACAGATGACTTTTTTCGACAATATATT
TCAAGTGTTTACACTAGAAAAATATCTAGAACGAAGGTAATAGAAGATTT
TAAAAAGGAGTATTTCAAAAGAGTAAATGAGGTAGATAAACTTGGTGAGT
ATTTATACAATTATGGTACTGATGAATTAGATGTTACAGAGGAAGAAGAA
GATTTTGATTGGAAGGAAGATGTAGAATCGATTGAGGAAATCGACATAAA
AAACAAGGATAAAGTCGACATAACGGTTTTTCTGAATCAGATTTTAAATG
CTGCTAAGTGCTACTCAAATATTTGGTATTCTAATTTTGAAAATGCTCAA
ATAAATAGTGGAATTGATGAATTGAAAGCTATTAGATCTAGACCAGCTTA
TATCTTTTTAATGCATTTCTTACAGAAAAACGAAAACAATATTAAAGAAA
AAGTAAGCGTACTAAATATGATAGGTACATTAATGCTTAGAAGACATGTT
ACAGGACAAACCACAGCCTATAAAAATGAAATATTTTTAGATGAGGGTAT
AAAAGACGAGCCAGATAACTGGCTCATAGACTACTATCAAAAACTTACTC
AGACAGCTAAAATTATACGTCTTGATGTCCAGCATTCACAAGATGCTTAC
AAACTATTTGAAACTATTAATAATCGCGGATTAAGGCTGTCTTCTACAGA
TATCCTGAAAAACTTCATTTTGGGTCATGCAGCCAAGATTGGTAATGAAA
AATTAAATGAAGTAAAAGAAATTTGGGCCGATTTGATTATTGCTTTAGAT
GGATTATCAACAGATGACTTTTTTCGACAATATATTTCAAGTGTTTACAC
TAGAAAAATATCTAGAACGAAGGTAATAGAAGATTTTAAAAAGGAGTATT
TCAAAAGAGTAAATGAGGTAGATAAACTTGGTGAGTATTTATACAATTAT
GGTACTGATGAATTAGATGTTACAGAGGAAGAAGAAGATTTTGATTGGAA
GGAAGATGTAGAATCGATTGAGGAAATCGACATAAAAAACAAGGATAAAG
TCGACATAACGGTTTTTCTGAATCAGATTTTAAATGCTGCTAAGTGCTAC
TCAAATATTTGGTATTCTAATTTTGAAAATGCTCAAATAAATAGTGGAAT
TGATGAATTGAAAGCTATTAGATCTAGACCAGCTTATATCTTTTTAATGC
ATTTCTTACAGAAAAACGAAAACAATATTAAAGAAAAAGTAAGCGTACTA
AATATGATAGGTACATTAATGCTTAGAAGACATGTTACAGGACAAACCAC
AGCCTATAAAAATGAAATATTT
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