mRNA_E-siliculosus-1a_F_contig16980.3903.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16980.3903.1
Unique NamemRNA_E-siliculosus-1a_F_contig16980.3903.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: A0A1D9PEE8_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium commune TaxID=1306519 RepID=A0A1D9PEE8_9FLAO)

HSP 1 Score: 194 bits (493), Expect = 2.410e-61
Identity = 94/121 (77.69%), Postives = 113/121 (93.39%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEE-FQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQNNQLPE 360
            Y+LIEN+DDNEYLKNFKSF+Y QNSNYK+LLD+++S++ FQV++MGHSCGLSDRT+LNTIFEH NC+SIKVFYHQ++DGSDN+TEI+QNISRHFN KKLMREKIVNK+L  PLPQ  QLP+
Sbjct:   52 YKLIENIDDNEYLKNFKSFQYLQNSNYKSLLDFVESDKKFQVYIMGHSCGLSDRTMLNTIFEHSNCISIKVFYHQREDGSDNYTEIIQNISRHFNKKKLMREKIVNKTLCHPLPQI-QLPK 171          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: A0A0P7A3L0_9FLAO (Uncharacterized protein n=1 Tax=Croceitalea dokdonensis DOKDO 023 TaxID=1300341 RepID=A0A0P7A3L0_9FLAO)

HSP 1 Score: 201 bits (510), Expect = 8.100e-61
Identity = 95/115 (82.61%), Postives = 110/115 (95.65%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEEFQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQN 345
            Y+ IENL+DNEYLKNFKSFKYSQNSNYKNLLDYIDS++FQV+VMGHSCGLSDRTLLNTIFEH NC SIKVFY+Q++DG+DNFTEI+QN+SRHFN+KK+MR K+VNKSL +PLPQN
Sbjct:  298 YKSIENLNDNEYLKNFKSFKYSQNSNYKNLLDYIDSDKFQVYVMGHSCGLSDRTLLNTIFEHDNCRSIKVFYYQREDGTDNFTEIIQNMSRHFNDKKMMRAKVVNKSLCQPLPQN 412          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: UPI000AAD96C0 (AbiH family protein n=1 Tax=Flavobacterium commune TaxID=1306519 RepID=UPI000AAD96C0)

HSP 1 Score: 194 bits (493), Expect = 1.650e-60
Identity = 94/121 (77.69%), Postives = 113/121 (93.39%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEE-FQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQNNQLPE 360
            Y+LIEN+DDNEYLKNFKSF+Y QNSNYK+LLD+++S++ FQV++MGHSCGLSDRT+LNTIFEH NC+SIKVFYHQ++DGSDN+TEI+QNISRHFN KKLMREKIVNK+L  PLPQ  QLP+
Sbjct:  113 YKLIENIDDNEYLKNFKSFQYLQNSNYKSLLDFVESDKKFQVYIMGHSCGLSDRTMLNTIFEHSNCISIKVFYHQREDGSDNYTEIIQNISRHFNKKKLMREKIVNKTLCHPLPQI-QLPK 232          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: A0A1I4UYS1_9FLAO (Bacteriophage abortive infection AbiH n=1 Tax=Flavobacterium succinicans TaxID=29536 RepID=A0A1I4UYS1_9FLAO)

HSP 1 Score: 192 bits (489), Expect = 6.420e-58
Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEEFQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQNNQLP 357
            Y+ IENLDDNEYLKNFKSF+Y QNSNYK LLD+ID+ +FQV ++GHSCGLSDRTLLNTIFEH NC SIKV+YHQKDDGSDN+TEI+QNISRHFN KKLMREKIVNK+L K LPQ  QLP
Sbjct:  277 YKRIENLDDNEYLKNFKSFQYLQNSNYKKLLDFIDTNKFQVVILGHSCGLSDRTLLNTIFEHTNCRSIKVYYHQKDDGSDNYTEIIQNISRHFNKKKLMREKIVNKTLCKLLPQI-QLP 394          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: UPI00188BD854 (AbiH family protein n=1 Tax=Flavobacterium sp. HJJ TaxID=2783792 RepID=UPI00188BD854)

HSP 1 Score: 191 bits (484), Expect = 3.350e-57
Identity = 93/121 (76.86%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEE-FQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQNNQLPE 360
            Y+ IENLDDNEYLKNFKSF+Y QNSNYK LLD+++S++ FQV++MGHSCGLSDRT+LNTIFEH NC SIKVFYHQ++DG+DN+TEI+QNISRHFN KKLMREKIVNK+L +PLPQ  QLP+
Sbjct:  274 YKTIENLDDNEYLKNFKSFQYLQNSNYKQLLDFVESDQKFQVYIMGHSCGLSDRTMLNTIFEHPNCRSIKVFYHQREDGTDNYTEIIQNISRHFNKKKLMREKIVNKTLCQPLPQI-QLPK 393          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: UPI00140B36E5 (AbiH family protein n=1 Tax=Flavobacterium bernardetii TaxID=2813823 RepID=UPI00140B36E5)

HSP 1 Score: 190 bits (483), Expect = 7.660e-57
Identity = 93/120 (77.50%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEEFQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQNNQLPE 360
            Y++IEN++DNEYL+NFKSF+Y QN+NY NLL Y+DS++FQV ++GHSCGLSDRTLLNTIFEH NC SIKVFYHQKDDG+D +TEIVQNISRHFN KKLMREKIVNK+L KPLPQ  QLP+
Sbjct:  293 YKVIENINDNEYLRNFKSFQYLQNNNYDNLLRYVDSDKFQVLILGHSCGLSDRTLLNTIFEHDNCRSIKVFYHQKDDGTDIYTEIVQNISRHFNKKKLMREKIVNKTLCKPLPQI-QLPK 411          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: A0A4R5FPL1_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium sp. GT3P67 TaxID=2541722 RepID=A0A4R5FPL1_9FLAO)

HSP 1 Score: 189 bits (481), Expect = 9.410e-57
Identity = 90/120 (75.00%), Postives = 113/120 (94.17%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSE-EFQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQNNQLP 357
            Y++IEN+DDNEYL+NFKSF+Y Q+SNYK+LLD+++S+ +FQV++MGHSCGLSDRT+LNTIFEH NC+SIKVFYHQ++DG+DN+TEI+QNISRHFN KKLMREKIVNK+L +PLPQ  QLP
Sbjct:  274 YKMIENIDDNEYLRNFKSFQYLQSSNYKSLLDFVESDRKFQVYIMGHSCGLSDRTMLNTIFEHPNCISIKVFYHQREDGTDNYTEIIQNISRHFNKKKLMREKIVNKTLCEPLPQM-QLP 392          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: UPI001C5B5E2C (bacteriophage abortive infection AbiH family protein n=1 Tax=Flavobacterium sp. NAS39 TaxID=2857508 RepID=UPI001C5B5E2C)

HSP 1 Score: 190 bits (482), Expect = 1.080e-56
Identity = 92/120 (76.67%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEE-FQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQNNQLP 357
            Y++IENLDDNEYLKNFKSF+Y QNSNYK LLD+++S++ FQV++MGHSCGLSDRT+LNTIFEH NC SIKVFYHQ++DG+DN+TEI+QNISRHFN KKLMREKIVNK+L +PLP+  QLP
Sbjct:  294 YKMIENLDDNEYLKNFKSFQYLQNSNYKQLLDFVESDQKFQVYIMGHSCGLSDRTMLNTIFEHPNCRSIKVFYHQREDGTDNYTEIIQNISRHFNKKKLMREKIVNKTLCQPLPKI-QLP 412          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: A0A0N0ZUE7_9FLAO (Uncharacterized protein n=2 Tax=Chryseobacterium indologenes TaxID=253 RepID=A0A0N0ZUE7_9FLAO)

HSP 1 Score: 181 bits (459), Expect = 2.230e-56
Identity = 82/115 (71.30%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEEFQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQN 345
            Y+++EN  DN +LKN KSF Y  NSNY+NLL++I+S +FQ+F+MGHSCGLSDRTLLNT+FEH NC SIK+FYHQKDDG+DNFTE+ QNISRHFN K +MREK+V+KS+ KPLPQN
Sbjct:   37 YKILENTGDNAFLKNIKSFMYFNNSNYRNLLNWIESNDFQIFIMGHSCGLSDRTLLNTLFEHNNCKSIKIFYHQKDDGTDNFTELSQNISRHFNKKSMMREKVVDKSISKPLPQN 151          
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Match: UPI001B3205C9 (AbiH family protein n=1 Tax=Flavobacterium flabelliforme TaxID=2816119 RepID=UPI001B3205C9)

HSP 1 Score: 189 bits (479), Expect = 2.820e-56
Identity = 85/114 (74.56%), Postives = 108/114 (94.74%), Query Frame = 1
Query:    1 YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEEFQVFVMGHSCGLSDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMREKIVNKSLYKPLPQ 342
            Y++IEN++DNEYL+NFKSF Y QNSNYK+LLD+I++++FQ+++MGHSCGLSDRTLLNT+FEH NC SIKVFYH+++DG+DN+TEI+QNISRHFN KKLMREKIVNK+L +PLPQ
Sbjct:  291 YKIIENINDNEYLRNFKSFLYLQNSNYKSLLDFIENDKFQIYIMGHSCGLSDRTLLNTVFEHDNCRSIKVFYHEREDGTDNYTEIIQNISRHFNKKKLMREKIVNKTLCQPLPQ 404          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16980.3903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D9PEE8_9FLAO2.410e-6177.69Uncharacterized protein n=1 Tax=Flavobacterium com... [more]
A0A0P7A3L0_9FLAO8.100e-6182.61Uncharacterized protein n=1 Tax=Croceitalea dokdon... [more]
UPI000AAD96C01.650e-6077.69AbiH family protein n=1 Tax=Flavobacterium commune... [more]
A0A1I4UYS1_9FLAO6.420e-5880.67Bacteriophage abortive infection AbiH n=1 Tax=Flav... [more]
UPI00188BD8543.350e-5776.86AbiH family protein n=1 Tax=Flavobacterium sp. HJJ... [more]
UPI00140B36E57.660e-5777.50AbiH family protein n=1 Tax=Flavobacterium bernard... [more]
A0A4R5FPL1_9FLAO9.410e-5775.00Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
UPI001C5B5E2C1.080e-5676.67bacteriophage abortive infection AbiH family prote... [more]
A0A0N0ZUE7_9FLAO2.230e-5671.30Uncharacterized protein n=2 Tax=Chryseobacterium i... [more]
UPI001B3205C92.820e-5674.56AbiH family protein n=1 Tax=Flavobacterium flabell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16980contigE-siliculosus-1a_F_contig16980:2..370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size369
Model size369
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacterium
COG Functional cat.S
EggNOG OGs1I3I5@117743,2DM8V@1,2NTWW@237,3274K@2,4NM1U@976
EggNOG free text desc.Bacteriophage abortive infection AbiH
Seed eggNOG ortholog1450525.JATV01000001_gene2690
Seed ortholog evalue1.7e-47
Seed ortholog score195.3
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928194.6635735-CDS-E-siliculosus-1a_F_contig16980:1..3701622928194.6635735-CDS-E-siliculosus-1a_F_contig16980:1..370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16980 2..370 +
1696318843.3090694-CDS-E-siliculosus-1a_F_contig16980:1..3701696318843.3090694-CDS-E-siliculosus-1a_F_contig16980:1..370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16980 2..370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16980.3903.1prot_E-siliculosus-1a_F_contig16980.3903.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16980 2..370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16980.3903.1

>prot_E-siliculosus-1a_F_contig16980.3903.1 ID=prot_E-siliculosus-1a_F_contig16980.3903.1|Name=mRNA_E-siliculosus-1a_F_contig16980.3903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=123bp
YRLIENLDDNEYLKNFKSFKYSQNSNYKNLLDYIDSEEFQVFVMGHSCGL
SDRTLLNTIFEHKNCLSIKVFYHQKDDGSDNFTEIVQNISRHFNNKKLMR
EKIVNKSLYKPLPQNNQLPEVY*
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mRNA from alignment at E-siliculosus-1a_F_contig16980:2..370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16980.3903.1 ID=mRNA_E-siliculosus-1a_F_contig16980.3903.1|Name=mRNA_E-siliculosus-1a_F_contig16980.3903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=369bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16980:2..370+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACAGATTAATTGAAAATTTAGATGATAATGAATATCTAAAAAATTTCAA ATCTTTTAAATATTCTCAAAATTCAAATTATAAAAACCTTTTAGATTATA TAGATTCAGAAGAATTTCAGGTTTTTGTCATGGGGCATTCATGTGGATTA TCTGACAGGACTTTATTAAATACAATTTTTGAACATAAAAATTGTCTCTC CATCAAAGTCTTTTACCATCAAAAAGATGATGGAAGCGACAACTTTACTG AAATAGTCCAAAATATTTCAAGACATTTTAACAACAAGAAATTGATGCGG GAGAAAATTGTAAATAAATCATTGTACAAACCATTACCTCAAAATAATCA ACTGCCAGAAGTTTACTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16980:2..370+

>mRNA_E-siliculosus-1a_F_contig16980.3903.1 ID=mRNA_E-siliculosus-1a_F_contig16980.3903.1|Name=mRNA_E-siliculosus-1a_F_contig16980.3903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16980:2..370+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACAGATTAATTGAAAATTTAGATGATAATGAATATCTAAAAAATTTCAA
ATCTTTTAAATATTCTCAAAATTCAAATTATAAAAACCTTTTAGATTATA
TAGATTCAGAAGAATTTCAGGTTTTTGTCATGGGGCATTCATGTGGATTA
TCTGACAGGACTTTATTAAATACAATTTTTGAACATAAAAATTGTCTCTC
CATCAAAGTCTTTTACCATCAAAAAGATGATGGAAGCGACAACTTTACTG
AAATAGTCCAAAATATTTCAAGACATTTTAACAACAAGAAATTGATGCGG
GAGAAAATTGTAAATAAATCATTGTACAAACCATTACCTCAAAATAATCA
ACTGCCAGAAGTTTACTAATACAGATTAATTGAAAATTTAGATGATAATG
AATATCTAAAAAATTTCAAATCTTTTAAATATTCTCAAAATTCAAATTAT
AAAAACCTTTTAGATTATATAGATTCAGAAGAATTTCAGGTTTTTGTCAT
GGGGCATTCATGTGGATTATCTGACAGGACTTTATTAAATACAATTTTTG
AACATAAAAATTGTCTCTCCATCAAAGTCTTTTACCATCAAAAAGATGAT
GGAAGCGACAACTTTACTGAAATAGTCCAAAATATTTCAAGACATTTTAA
CAACAAGAAATTGATGCGGGAGAAAATTGTAAATAAATCATTGTACAAAC
CATTACCTCAAAATAATCAACTGCCAGAAGTTTACTAA
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