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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1697.3898.1 vs. uniprot
Match: A0A6H5KDC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC8_9PHAE) HSP 1 Score: 328 bits (840), Expect = 4.810e-111 Identity = 160/170 (94.12%), Postives = 165/170 (97.06%), Query Frame = 3
Query: 264 MVLGSKKGRQPVPDHDDGGAYDAMESGSQASRSRLNRQSYGGGRSSTGYAASETSDISAGPEKWRRVRRGAHVSYQPFDVEDYQDAASDEDSDIPMQFPPISETADDRKNWPKSCPFLHMKFEEMAIKDKRKFIWLAYNFWHFLVWTLLFNMCAAVVTSLISPSPKEDQA 773
MVLG KKGRQPVPDHDDGGAYDAMESGSQASRSRLNRQSYGGGRSST YAASETSDISAGPEKWRRVRRGAHVSYQPFDVEDYQ+AASD+DS IP QFPP SETADDRKNWPK+CPFLHMKFEEMAIKDKR+FIWLAY+FWHFLVWTLLFNMCAAVVTSLISPSPKEDQA
Sbjct: 1 MVLGGKKGRQPVPDHDDGGAYDAMESGSQASRSRLNRQSYGGGRSSTDYAASETSDISAGPEKWRRVRRGAHVSYQPFDVEDYQEAASDDDSGIPTQFPPTSETADDRKNWPKACPFLHMKFEEMAIKDKRRFIWLAYHFWHFLVWTLLFNMCAAVVTSLISPSPKEDQA 170
BLAST of mRNA_E-siliculosus-1a_F_contig1697.3898.1 vs. uniprot
Match: D8LM64_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM64_ECTSI) HSP 1 Score: 341 bits (875), Expect = 8.220e-107 Identity = 167/169 (98.82%), Postives = 167/169 (98.82%), Query Frame = 3
Query: 264 MVLGSKKGRQPVPDHDDGGAYDAMESGSQASRSRLNRQSYGGGRSSTGYAASETSDISAGPEKWRRVRRGAHVSYQPFDVEDYQDAASDEDSDIPMQFPPISETADDRKNWPKSCPFLHMKFEEMAIKDKRKFIWLAYNFWHFLVWTLLFNMCAAVVTSLISPSPKEDQ 770
MVLG KKGRQPVPDHDDGGAYDAMESGSQASRSRLNRQSYGGGRSSTGYAASETSDISAGPEKWRRVRRGAHVSYQPFDVEDYQDAASDED DIPMQFPPISETADDRKNWPKSCPFLHMKFEEMAIKDKRKFIWLAYNFWHFLVWTLLFNMCAAVVTSLISPSPKEDQ
Sbjct: 1 MVLGGKKGRQPVPDHDDGGAYDAMESGSQASRSRLNRQSYGGGRSSTGYAASETSDISAGPEKWRRVRRGAHVSYQPFDVEDYQDAASDEDGDIPMQFPPISETADDRKNWPKSCPFLHMKFEEMAIKDKRKFIWLAYNFWHFLVWTLLFNMCAAVVTSLISPSPKEDQ 169
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 510 |
| Model size | 774 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog | Ec-18_002630.1 |
| Ec32 ortholog description | RmlC-like jelly roll fold |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928193.9791622-UTR-E-siliculosus-1a_F_contig1697:23646..23909 | 1622928193.9791622-UTR-E-siliculosus-1a_F_contig1697:23646..23909 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1697 23647..23909 - |
| 1696318843.0882034-UTR-E-siliculosus-1a_F_contig1697:23646..23909 | 1696318843.0882034-UTR-E-siliculosus-1a_F_contig1697:23646..23909 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1697 23647..23909 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1697.3898.1 >prot_E-siliculosus-1a_F_contig1697.3898.1 ID=prot_E-siliculosus-1a_F_contig1697.3898.1|Name=mRNA_E-siliculosus-1a_F_contig1697.3898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=170bp
MVLGSKKGRQPVPDHDDGGAYDAMESGSQASRSRLNRQSYGGGRSSTGYA
ASETSDISAGPEKWRRVRRGAHVSYQPFDVEDYQDAASDEDSDIPMQFPP
ISETADDRKNWPKSCPFLHMKFEEMAIKDKRKFIWLAYNFWHFLVWTLLF
NMCAAVVTSLISPSPKEDQA back to topmRNA from alignment at E-siliculosus-1a_F_contig1697:19707..23909- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1697.3898.1 ID=mRNA_E-siliculosus-1a_F_contig1697.3898.1|Name=mRNA_E-siliculosus-1a_F_contig1697.3898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4203bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1697:19707..23909- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCATCACCTTGCAAAAACACCACCCAAACAGCGCGACTTGAGGTCTTTGA
GGTGTCTGACGTCGAGGGCTAGGCGCTCCAGTCCTCCCGCTCACCGCCAC
TTCCCCAGAAGGACGCAAGTGCCCGGAAACGGGAAGGGTATATACAGACA
CCCCGGCACAAGAGGAAGCAGCGACGAGTGGGAGGAGCGGGCAGGGCACA
CACGACGCACACCTTTGGGGGTGTTGTGGTTGGGATCTCGGGCGCTGAGA
GCGGAAGGTTGACATGGTCCTGGGCAGCAAGAAGGGCCGGCAGCCGGTGC
CCGACCACGGTGAGTCCCGGCACCCCGGGTGCGGTGCTGTGTCGAGGTCT
CTCTGCTGGGTTGATACATATCCCGTTGTGTTTTGTCTTCCATGTCGCAG
ACGAGCGAGATGTGCAAGATGTGTTCGTTACGGGAGCAGCGGTCAGGCAT
CCCGTCATGCTGGCACTACTTACAAGAGTGCCTCGTGTATAACTAAACGC
GAACGAGGCTGTTTTCAGCCCTCACGACAGGTTGCTGGACGCGTGCCTAG
GGGTGTGTGTGTCGGCTTCGGTGTCGATGGCCGTTGAAACAGAAAGTGCT
CGTGAAGTGATCGAAAAACTTGGAATGCTCCCGCGCAAAAAACGCAGGCA
AGTCTCCTTCTCTGATCTTCGTACATTTCTTCAGCAGCAGCTTTTTTGGG
GCCTTGCGTATGTTTCGATACTTCGTCCCTGATGCTGGCTGCGAGGTGCT
ACTGGAGTTTCTTCGCCCACAATCCCGCCACTACGACGAACAGCAGCAGT
TGATTTGCTTGACCCGCGGACGATCAGGCGGGGGTTCGAAATCCCGACCC
CACGCTGTACCACGCTGTTGAACACGCCATGCATATGACCACAACGTTCG
TCCAAGAAATTCGAACATGTTCCGCCGCGTGTTCCGTGATTAAATTCCAA
CTCTCGACCAAGTTGAGTCGGCATCAGCAGATGCACAACAACCCACGCAA
TTGATCACCAACAACCACCACCGGCTGGCCTCTGAGGGTGCTGCTCGCCG
CTCTACCTTCTTTCTGCTGGCTTGGGCTCTCCCCCCCCCCGTTACCCATC
AGTCAGTAGCATAACGCAGCGCGGCGTTGTGAAGGTTCTTTGGCCTCTTT
GGGGTCGATTTGATCGATTTCGAATGAACGGAACGTCTTTCGTTACTTAT
GTATTGGAGGCCACGCTTCACGCTTGCTGTTGTCACCATTTTTGATTGGA
AGACGTTCTTTCCAGGCGCATGCTTCCCTGGCGCTACCCTGTGTGCAAGG
AGCAGGCAACTCCCTCTCCTCTACACGATATATTCGTCGTGCGTAGCTTT
GCAGAGCCATGATGCTTGCACCAGGGGTAGGTATAATGAATGCTTGCCTA
CAGACGTTGGATATCCTCGCCCTGGACGGCCGTATGTATTTACTAGTATT
TAACCATGACGTTCATTTTCGTATCCACGCCTATTAATTGGCAATTCATC
GAGAGGCTAGAAGTTCCGGTGATCCGGTCCTGCATGCAGCAAGTCCTAGG
CAGGCTGACGTTTGTTCTTTGACAACACGCTACACAATATACACCACAGA
TATACTGTCTTTTTTTTTTAAATACATATTCCATCTCGTCCGTCTTATGC
ATAGAAGGCGGCCCATCCCTCTGTACTCGGTGGAGCTACATTTTCGATCC
GGTGCCACGCTAAGTCTCGCTGGGTACTTATATGCACACGTGTACCTTTT
TTTTGTGCCGCGATAGGGCGCCTTTCGCGGTGCACATGTTTATTTGTGCC
ACGTGAAAGGACGCGGCTTTGCGGCACAACTTGCCTTTAATTGTGTCGCG
ATACGCGTGTGTGGGTGCGCGATTTAGGTCTCTATTCTTCGCCAACAATT
ATTTCGAGCTTCAGAGATAAAAGTAGCACATACCAGCTACACGGAGGCGT
CGATTTTCTCGTATCAAGCCAAGCACATATTCTTTAGTGTCGCACAACTT
TACCGCAATTTCTGCACGTTGTGCTGGAATATAGCAGCGGGATGCATAGG
TACAGCAGGTGCTTGCAGCTACGTACTTCCAACATGTCCCGGAAATTCTA
ACATCGACAAGACCGGGCTTGGAATTAGCCTTGTGCTTGGAACGAAACAA
CCACTTTCTAAGCAACAAGCACACATCTCTCCCCCCCTGCCGATGACCTT
TGGCGCTCTCTCTGTCTCATCAGACGATGGCGGAGCGTACGACGCGATGG
AGAGCGGGAGCCAGGCGAGCCGGTCGCGCCTGAACAGGCAGAGCTACGGC
GGGGGTCGATCCAGCACCGGTTACGCCGCGTCGGAGACCTCGGACATCTC
CGCCGGGCCGGAGAAGTGGAGGCGTGTTCGGAGAGGTGCGGGCGGCGTTG
CAGTTGTTTGGGGTTGGCAGAGGCGTGGAAGGCGTGCTCACGTTTTGCAT
GCCTCACTTGTTAGGAGACCATTGACCACGCGTCGTCCTCGAGAGGACGG
GGCATTGCTCCTACTGGACCGATCGCGAGGGGAGGGGGGTTTTGTCGTCG
ATTGCTTCCGGTGGTGCTATGCATGTTGGACTGCTTTTGGTTGCGGTGGT
TTTTTTTTTATTATTATTTCATCAATATGACCCAACGAATCCATCTCCAT
CGAAGAAAAGAGTCTAAGATAGATTAGCAATGAATCCATAGCATCAGCGA
ACATTCTGTTTTTCCACGATGTCCCGAGCAGCACACAGTGACATCTCCCC
CGTGGGTAAGGGTCGTTTTTTTTTCTGCCACAACGTTTGTGCCGCCGTGA
CATTGATGTTGCCGGTGGCGGTGCTGGTTTCTGGTTTGTTGATTTAGGTC
CTGCTGTCGGTGTTGGGGGAGTGCCACCTCTCCTGTCGATTTTGCGGCGC
CCCCCCCAACCAAAATCTGTGGAGCAAATGCTGTGTGTGTGGCCGCTGAC
TTGTCACCCATCACACCGAAACAACACAACTTATATTCTGTCTGTCGTTC
ATGTGTTTTCGCCCCAAGAAGTCGTCGTCCTAAAGTAATAAAAATCTGGC
CATCCCTCATATGAGTACACCTACCCCCCCCCCCGACAATATGAAGTAAA
ATGCTGTGTTTGTGGCCGCTAATGTATAGTGATGAAGGTCGGTCGATCTG
CAAGTCTGTCGATCCCCCCCCCTCCAATCCGACCATGTGTACCAGGGGCG
CACGTGAGCTATCAGCCTTTCGATGTGGAAGACTACCAGGACGCGGCCTC
TGACGAGGACAGCGACATACCCATGCAGTTCCCCCCGATCTCGGAGACGG
CCGACGACAGAAAGAACTGGCCCAAGTCGTGCCCGTTCCTGCACATGAAG
TTCGAGGAGATGGCAATCAAGGTTCGTCACGATGATACTGCTCTGTACGT
GTGTATGTGTTTTTTTTTTTCTTCAGTTTTGGGTACGCAATTTGCACGGG
CGGTGTTACTGTTTCTGCTTGGGGAAGATGGCCGTCGAGGTTTGATTGGG
TGCCTGGTGTTGCTGTTTCTGCTTGTGGGGGAGGTGGTCATCAGAAGGTT
TGATTGCCTGCATGATGTTGGTATGGTTGCTTGAAGGAGATGGTCATCAG
AAGGTTCGGTGGCACACTTGGTGTTAGTGTTGTTGCATGGAGGAGATGGC
CATTAAACATGTGTGATTGCGTGCTTGGTATATTGGTGTTGTTGATTGGA
GTAGATGGCCACCAAAATGTTTGATTGTGTGCTTGGTATTGGTGTTGTTG
ATTGGAGATGGTCATGAAAACGTTTGGTTGCGTGCATAGTGTTGGTGTTG
TTCCTTTGGAGGAGATGGCCATCAACGTTCGTGCTCGTGCCTGGTGTTGC
TGTTGGTACTTTTGCTTGGAGGAGGCGGCCATCTTGGTTAAGTGTAGCCA
AACCCAAGATAGTACACAAGGGGAGAGATATCACCCGCTACCACCACCAC
CACGACCGCGTATTTGCACCCTGCACCCTGACATGCGTAACAAGTGCGAT
CAGCTAGTATCATGTGTTTGATTATTTTGTCCTCTCTCTCTCTCTCTTTC
CTTCTATCCCTCTCTCTCTCGTTGCAGGACAAGCGGAAGTTCATCTGGCT
TGCGTACAACTTCTGGCACTTCTTGGTGTGGACGCTGCTGTTCAACATGT
GCGCCGCGGTGGTGACGTCTCTCATCTCGCCCTCCCCGAAGGAGGACCAG
GCA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1697:19707..23909- >mRNA_E-siliculosus-1a_F_contig1697.3898.1 ID=mRNA_E-siliculosus-1a_F_contig1697.3898.1|Name=mRNA_E-siliculosus-1a_F_contig1697.3898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1697:19707..23909- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCCTGGGCAGCAAGAAGGGCCGGCAGCCGGTGCCCGACCACGATGG
TCCTGGGCAGCAAGAAGGGCCGGCAGCCGGTGCCCGACCACGACGATGGC
GGAGCGTACGACGCGATGGAGAGCGGGAGCCAGGCGAGCCGGTCGCGCCT
GAACAGGCAGAGCTACGGCGGGGGTCGATCCAGCACCGGTTACGCCGCGT
CGGAGACCTCGGACATCTCCGCCGGGCCGGAGAAGTGGAGGCGTGTTCGG
AGAGACGATGGCGGAGCGTACGACGCGATGGAGAGCGGGAGCCAGGCGAG
CCGGTCGCGCCTGAACAGGCAGAGCTACGGCGGGGGTCGATCCAGCACCG
GTTACGCCGCGTCGGAGACCTCGGACATCTCCGCCGGGCCGGAGAAGTGG
AGGCGTGTTCGGAGAGGGGCGCACGTGAGCTATCAGCCTTTCGATGTGGA
AGACTACCAGGACGCGGCCTCTGACGAGGACAGCGACATACCCATGCAGT
TCCCCCCGATCTCGGAGACGGCCGACGACAGAAAGAACTGGCCCAAGTCG
TGCCCGTTCCTGCACATGAAGTTCGAGGAGATGGCAATCAAGGGGCGCAC
GTGAGCTATCAGCCTTTCGATGTGGAAGACTACCAGGACGCGGCCTCTGA
CGAGGACAGCGACATACCCATGCAGTTCCCCCCGATCTCGGAGACGGCCG
ACGACAGAAAGAACTGGCCCAAGTCGTGCCCGTTCCTGCACATGAAGTTC
GAGGAGATGGCAATCAAGGACAAGCGGAAGTTCATCTGGCTTGCGTACAA
CTTCTGGCACTTCTTGGTGTGGACGCTGCTGTTCAACATGTGCGCCGCGG
TGGTGACGTCTCTCATCTCGCCCTCCCCGAAGGAGGACCAGGCAGACAAG
CGGAAGTTCATCTGGCTTGCGTACAACTTCTGGCACTTCTTGGTGTGGAC
GCTGCTGTTCAACATGTGCGCCGCGGTGGTGACGTCTCTCATCTCGCCCT
CCCCGAAGGAGGACCAGGCA back to top
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