mRNA_E-siliculosus-1a_F_contig1693.3890.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1693.3890.1
Unique NamemRNA_E-siliculosus-1a_F_contig1693.3890.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1693.3890.1 vs. uniprot
Match: A0A6H5K773_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K773_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.910e-83
Identity = 124/132 (93.94%), Postives = 125/132 (94.70%), Query Frame = 3 
Query:   57 MFRSLVRARPSWPGVSTRSAMQPPRVSAAQHQVPRQVQQPAAVRSQPFHSTAPASIGFKNFKNSPRPKWKTQQKLDAKNADILAEAGGQPRVTYAEALKSHKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ 452
            MFRSLVR RPSWPG STR AMQPPRVSAA  Q PRQVQQP AVRSQPFHSTAPASIGFKNFKNSPRPKWKTQQKLDAKNADILA+AGGQPRVTYAEALKSHKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ
Sbjct:    1 MFRSLVRTRPSWPGASTRPAMQPPRVSAAHQQGPRQVQQPDAVRSQPFHSTAPASIGFKNFKNSPRPKWKTQQKLDAKNADILAKAGGQPRVTYAEALKSHKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1693.3890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K773_9PHAE1.910e-8393.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1693contigE-siliculosus-1a_F_contig1693:14694..15952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size399
Model size495
Exons2
Ec32 orthologEc-01_005890.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorymitochondrion
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1693.3890.1prot_E-siliculosus-1a_F_contig1693.3890.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1693 14750..15912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928192.634619-UTR-E-siliculosus-1a_F_contig1693:14693..147491622928192.634619-UTR-E-siliculosus-1a_F_contig1693:14693..14749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1693 14694..14749 +
1696318842.2280068-UTR-E-siliculosus-1a_F_contig1693:14693..147491696318842.2280068-UTR-E-siliculosus-1a_F_contig1693:14693..14749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1693 14694..14749 +
1622928192.6711028-UTR-E-siliculosus-1a_F_contig1693:15912..159521622928192.6711028-UTR-E-siliculosus-1a_F_contig1693:15912..15952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1693 15913..15952 +
1696318842.2574842-UTR-E-siliculosus-1a_F_contig1693:15912..159521696318842.2574842-UTR-E-siliculosus-1a_F_contig1693:15912..15952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1693 15913..15952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928192.645378-CDS-E-siliculosus-1a_F_contig1693:14749..149591622928192.645378-CDS-E-siliculosus-1a_F_contig1693:14749..14959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1693 14750..14959 +
1696318842.239163-CDS-E-siliculosus-1a_F_contig1693:14749..149591696318842.239163-CDS-E-siliculosus-1a_F_contig1693:14749..14959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1693 14750..14959 +
1622928192.6555445-CDS-E-siliculosus-1a_F_contig1693:15723..159121622928192.6555445-CDS-E-siliculosus-1a_F_contig1693:15723..15912Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1693 15724..15912 +
1696318842.2481513-CDS-E-siliculosus-1a_F_contig1693:15723..159121696318842.2481513-CDS-E-siliculosus-1a_F_contig1693:15723..15912Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1693 15724..15912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1693.3890.1

>prot_E-siliculosus-1a_F_contig1693.3890.1 ID=prot_E-siliculosus-1a_F_contig1693.3890.1|Name=mRNA_E-siliculosus-1a_F_contig1693.3890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=133bp
MFRSLVRARPSWPGVSTRSAMQPPRVSAAQHQVPRQVQQPAAVRSQPFHS
TAPASIGFKNFKNSPRPKWKTQQKLDAKNADILAEAGGQPRVTYAEALKS
HKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1693:14694..15952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1693.3890.1 ID=mRNA_E-siliculosus-1a_F_contig1693.3890.1|Name=mRNA_E-siliculosus-1a_F_contig1693.3890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1259bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1693:14694..15952+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCAATATTCATCGTGTTGGTGGTGGTTAAGGACTTGCTTGGCGGTTACTA
TTGCCCATGTTTCGTTCCCTAGTACGAGCGCGGCCATCGTGGCCAGGGGT
CAGCACCAGATCCGCGATGCAGCCTCCCAGAGTGTCGGCTGCGCAACACC
AGGTGCCAAGGCAGGTCCAGCAGCCTGCTGCTGTGCGGTCCCAGCCTTTC
CACTCCACGGCTCCCGCGTCCATCGGATTCAAGAACTTCAAGAACTCGCC
AAGGCCTAAGTGGAAGGTGTGTGCATTGAAGTAGCGTCTCTTCGGAGGGT
CTACGAGAGCTTGCCGATCAAAACATCACGCTTCTGTATATCCCTTGTCC
CCAACATGACGGCTGATATCACCCCCCCCTCCTTGGCGTCGACGCCGAAG
AGATCATTGCCATTTGCGGAAATCGCAAGCCAGTCGATACGGACGGTAGC
AGGTGCGAAATAGCTGCCGCGTGGCTTACAAAGCACGTGCATCCACCAAT
GCCATTTGCCGAGGCAGACCAAGCCAAACGTCTTTTCTTTGACGAGACAT
GGGCAATGGGCTTGCCCATGGGTGCATCAGTTTTTTGGTGTTGAACAGAG
GAAGTCAACTCCATTCCCTCTTGACCGATAACTACTGCTGCTGTCGTGGT
TTCGATGTCTGTGGGAGTAACATTTTCGATGAAGGCGTTTGGCCGCATTG
GATCAACAAACGTTTCCTGTTTCCTGTTGCCAAAGTCGACAGCAACCAAA
AAGCATCAGCTCCGGTTGTCCAATTGCAGACGTGTGAATGGAACTGCGCA
TTGTATGCACATGACACCACTGGCCCCGAGTGAAATACGTCGTGACCGCG
AGGAATCCTACCATATCTGTTAAAAGCGCGAGCCGGGCGTTGCTCCTACA
AACTGTACGTTATAGAGCCGCCTCCCCTGGCTGCTCTTTTCTTGTATGCA
TCTGAAATATTGCAATACTTTATAACTACGTTCGCTTCGCCCGCTACCGG
CCCTGTCATCCCCCTCCGCCATCGCGAAAGACGCAACAAAAACTGGACGC
CAAGAACGCCGACATTCTTGCGGAAGCGGGAGGCCAGCCGCGCGTGACCT
ACGCCGAGGCCCTCAAATCGCACAAGCCGAGGGCGTGGATCGGGGCAAGG
AAGAAGGTCGTGTGGGGTCGGTTGTTCGGGCCAAGCAACACCGGTGGTGG
CAACAAACAAGGCCAATAGTCCAGCACGCTCAGGCGCATCGCGGCGGAGG
GATCGACGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1693:14694..15952+

>mRNA_E-siliculosus-1a_F_contig1693.3890.1 ID=mRNA_E-siliculosus-1a_F_contig1693.3890.1|Name=mRNA_E-siliculosus-1a_F_contig1693.3890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1693:14694..15952+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTCGTTCCCTAGTACGAGCGCGGCCATCGTGGCCAGGGGTCAGCAC
CAGATCCGCGATGCAGCCTCCCAGAGTGTCGGCTGCGCAACACCAGGTGC
CAAGGCAGGTCCAGCAGCCTGCTGCTGTGCGGTCCCAGCCTTTCCACTCC
ACGGCTCCCGCGTCCATCGGATTCAAGAACTTCAAGAACTCGCCAAGGCC
TAAGTGGAAGATGTTTCGTTCCCTAGTACGAGCGCGGCCATCGTGGCCAG
GGGTCAGCACCAGATCCGCGATGCAGCCTCCCAGAGTGTCGGCTGCGCAA
CACCAGGTGCCAAGGCAGGTCCAGCAGCCTGCTGCTGTGCGGTCCCAGCC
TTTCCACTCCACGGCTCCCGCGTCCATCGGATTCAAGAACTTCAAGAACT
CGCCAAGGCCTAAGTGGAAGACGCAACAAAAACTGGACGCCAAGAACGCC
GACATTCTTGCGGAAGCGGGAGGCCAGCCGCGCGTGACCTACGCCGAGGC
CCTCAAATCGCACAAGCCGAGGGCGTGGATCGGGGCAAGGAAGAAGGTCG
TGTGGGGTCGGTTGTTCGGGCCAAGCAACACCGGTGGTGGCAACAAACAA
GGCCAATAGACGCAACAAAAACTGGACGCCAAGAACGCCGACATTCTTGC
GGAAGCGGGAGGCCAGCCGCGCGTGACCTACGCCGAGGCCCTCAAATCGC
ACAAGCCGAGGGCGTGGATCGGGGCAAGGAAGAAGGTCGTGTGGGGTCGG
TTGTTCGGGCCAAGCAACACCGGTGGTGGCAACAAACAAGGCCAATAG
back to top