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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1693.3889.1 vs. uniprot
Match: A0A6H5K8M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M6_9PHAE) HSP 1 Score: 398 bits (1022), Expect = 5.040e-136 Identity = 249/294 (84.69%), Postives = 256/294 (87.07%), Query Frame = 1
Query: 1 MGKANRGGQKRKEAPARKQLQGRGGSSGLLHKNNHKHHGGAHRAAGLDGEILSQRGRTLAQQLLQPNKRARGGKRRRKSSGTPSKPGSSETAVIQAEYAAVDARERAKEDSEKARRLRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSDSDS--GSLGAAGGRVGTNSNGRTSSSKPAQRTGGLFXXXXXXXXXXXXXXEEGGGLMAFASPSSFAGFSGAXXXXXXXXXXXXXXXGSKGGALAGA 876
MGKANRGGQKRKEAPARKQLQG+GG+SGLLHKNNHKH GAHRAAG DG + RTLAQQLLQPNKRARGGKRRRKSSGTPSKPGSSETAVIQAEYAAVDARE+AKEDSEKARR+RAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAAL DDGSDSDSDS GSLGAAGGRVG NGRTS+SKPAQRTGGLF EEGGGLMAFASPSSFAGF+G XXXXXXXX GSK GALAGA
Sbjct: 1 MGKANRGGQKRKEAPARKQLQGKGGNSGLLHKNNHKH--GAHRAAGFDGAAAMGK-RTLAQQLLQPNKRARGGKRRRKSSGTPSKPGSSETAVIQAEYAAVDAREKAKEDSEKARRVRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALEDDGSDSDSDSDHGSLGAAGGRVGIILNGRTSNSKPAQRTGGLFTNSTGCAFGSGPPAEEGGGLMAFASPSSFAGFAGXXXXXXXXXMGSVGFGGSKVGALAGA 291
BLAST of mRNA_E-siliculosus-1a_F_contig1693.3889.1 vs. uniprot
Match: D7G3V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V9_ECTSI) HSP 1 Score: 273 bits (699), Expect = 5.350e-88 Identity = 182/214 (85.05%), Postives = 184/214 (85.98%), Query Frame = 1
Query: 241 GTPSKPGSSETAVIQAEYAAVDARERAKEDSEKARRLRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSDSDS--GSLGAAGGRVGTNSNGRTSSSKPAQRTGGLFXXXXXXXXXXXXXXEEGGGLMAFASPSSFAGFSGAXXXXXXXXXXXXXXXGSKGGALAGA 876
G +PGSSETAVIQAEYAAVDARE+AKEDSEKARRLRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDS GSLGAAGGRVG SNGRTSSSKPAQRTG LF EEGGGLMAFASPSSFAGFSG XXXXXXXXXXXXX GSK GALAGA
Sbjct: 15 GRHGEPGSSETAVIQAEYAAVDAREKAKEDSEKARRLRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSXXXXXXGSLGAAGGRVGIISNGRTSSSKPAQRTGALFTNSAGRAFGSGPPAEEGGGLMAFASPSSFAGFSGTXXXXXXXXXXXXXFGGSKVGALAGA 228
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 984 |
| Model size | 984 |
| Exons | 5 |
| Ec32 ortholog | Ec-01_005880.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1693.3889.1 >prot_E-siliculosus-1a_F_contig1693.3889.1 ID=prot_E-siliculosus-1a_F_contig1693.3889.1|Name=mRNA_E-siliculosus-1a_F_contig1693.3889.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=328bp
MGKANRGGQKRKEAPARKQLQGRGGSSGLLHKNNHKHHGGAHRAAGLDGE
ILSQRGRTLAQQLLQPNKRARGGKRRRKSSGTPSKPGSSETAVIQAEYAA
VDARERAKEDSEKARRLRAPVRIRLAPSTTELRMPSEGEVSMASLRASSS
ARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSDSD
SGSLGAAGGRVGTNSNGRTSSSKPAQRTGGLFTNSTGRAFGSGPPAEEGG
GLMAFASPSSFAGFSGAGGGAGAGGMGSVGFGGSKGGALAGAAAAVATMG
AGPQPAASAASVGGGAGDADDDDDPDL* back to topmRNA from alignment at E-siliculosus-1a_F_contig1693:10829..14464- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1693.3889.1 ID=mRNA_E-siliculosus-1a_F_contig1693.3889.1|Name=mRNA_E-siliculosus-1a_F_contig1693.3889.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1693:10829..14464- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCAAAGCCAACAGAGGAGGACAGAAGCGAAAGGAAGCCCCTGCGCG
GAAGCAGCTGCAGGGAAGGGGCGGAAGCAGCGGATTGCTACACAAAAACA
ACCATAAACATCATGGAGGGGCTCATCGCGCGGCAGGATTGGACGGTGAG
ATTTTGAGTCAGCGAGGGTGACGAGAGGATGGGAAAAACGACGTCAAGAG
ACAGAGGATGGGAGAGAGGGGCACACGTACACAAAGGGATAAAGGTTGTT
CGAGAGATGCGATCATCAATTGGAGCTATAGATGCGGAGTAGTAAAAGTT
CCTGTGATGGACATGACAAGACGCATGTCGTCGCGTGACGTTCGAAGTAG
TTGTGCGCCGCCAGTGATTTGCTCGCAGCAGGCTGCGAATGTTTTGGCGA
AGCGCCGTAGCAGTGTGGCAGGTCCAGGATTCCTGATAGCATATTCTCCT
AGTCATACACAACCCGTCAAACGAGGAGAGCATGAAACCATTCGTGACCC
TAGAAAACACGAACGAGGCCGATGGTAGCGTCGGTGAAGCGGTAGATGAC
ATCGCTACGCGTATTGATAGATTAATAGATAATCATCCACAAAGAGTTGC
GGAGACTTGGTTTTAAAGGTCGCTCGCTTCCTCTCATGCTTTGTCGCAAG
AGCTTGTTCACTGAGCGTGTGCTGACTCCTCATGAAAAAACTCGCTCTTG
TCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCT
CCGCTTGTATTTATCCCACTGCTTCTCCCGGCCCATCCCATGCTCGCTGG
TCCTTCTTCTACGGGCTTGCGAATTAGGCGCGGCCGCCATGGGGAAGTGA
GTACATGCCAGAGACACCACAGCACCGCGCTCCTGTTGATGGAACACGCG
TTCTGCGATAGGGCTACACCTGGTAGCATGATCTAGCATGCTCTTGAAAA
AGTCGTTCTATCCACTCTTAAGGTCAACGCCATGCGCCAAGGGCTGCCAT
GGTCGTCAGCTGAACGCTGCCCTAACTCCGCCGTTGGTCGAACGATTTCC
TGCTTGCCTGTCTGTCTTATACTTACATGATTTTCGTTTTCTGTTCGCGC
CTCTCGTTGCTGGTGGCACATTTTGACCCCTTTGCTCCGCACTATGATGT
ACAGGAGAACGCTGGCCCAGCAGCTGTTGCAGCCGAACAAACGAGCCCGC
GGCGGCAAGAGACGTCGGAAGTCCAGTGGTACCCCGTCCAAGGTGCTGCT
ACTGCTGTGTGGATCTAGGCTTATTCGTTTTGTGTGCAACAGCAGTCGAG
ATGCACAAGGTAGTGAGGTCGTGGAATTTTTGAGAGAGTATACATACTAC
TTCACAGAGAGAGGGTACCTGTTCGAGATATTACCACGGCAGTCGAAGGG
GATGCGTTAAAGGCTTGAAGCTTGAAGCTTGTGGTAGTTAGGAGGCTGCC
GTGAGTCTGCGAGAGGAGGGTTGGGGTTCTCCTGGAGTTCGACGAAAGTG
CCAGAAGGTAGTTGTGAGGGACGGACAGTTTGGGCTGCTGGTGACAGCGA
GATGCCCGGAGTCCCGTAAGCAGCAGAGCAGAGGCTCCAGAACAGGTCAG
TTTCGCACCACAAATTGCGCATAGAGCCGACTTGCTGGTACATACGTATA
TCTATCAGCCGACAGTCTCAGCATGGACACCCGTCAAGGATAACAGTAAC
AACGACAGAAAGACGATGGGACCTCCCGTTCGTCTGGTCCCAGCATAGTG
CACAGGCAGCACCTTGAAATTGCCTGACCGCAACCAAGCGAAACCTGTTA
TAATGACAACACTACACACTCCCGTGACCTTGCCCGACTGCTTTGCACTG
GTGTCCAGCTCGACAATTAACTTGACCCCGCCCCCTGCCCCACCCCATCC
TTCATCGGAAACTCCTGCATGATGGTGGTGGCGTGCCTTGTTGACCTGGG
GAATCGATTGATGGATGGATGGATGGCTCACAGCCGGGATCGTCGGAGAC
TGCCGTGATTCAAGCGGAGTACGCCGCCGTGGACGCCCGCGAGAGGGCCA
AGGAAGACTCGGAAAAAGCGAGGCGTCTGCGCGCTCCCGTGAGGATCAGG
CTCGCGCCTTCGACGACGGAGCTGCGCATGCCGAGCGAAGGGTGAGCCGC
ACGTCACGAAGGACGTTGGTCCGCAGCGCGCACCTGGAGACAAACGGTAT
CGTAGTTGTCGTCAGCGGCAGGAGTGCGCTGGCCGGGCTTGCTTTGCGAC
ACGCTTGTACATGTTGTGAATTTTGCGGGGTGTCTGACCTGCGATGAAGA
CCACCATGATCAAGAAAGAGAACCCTCCGGTCTCGATGATCGCAACCACG
CAACCAAACACCGTTAAGCGTATTGTTGACACTCGACTGCTGTGCTATTC
ATCAACGTCCCCCGCGGGACATATAAGCTCGAATCAGGGTACCAGCCATC
TTTCTTCCATAGAATGCGATATGCATAGCAGCACACGCGTAAGGTTCTCT
CTGTCATCACCGCCCGCGCTTGATATTGTGATGATTCAAATTCGGCAACC
TGATTCGCCGACTTTTACCCCCACGCACTCCTGCTTCTTGTGGACGGCAT
GTTGTCACCGTCAAGCGAGGTGTCCATGGCGTCGCTCCGAGCGTCGAGCT
CCGCTCGCATGGTCGAAGCTCTTCTGCAGAGCATTACCGACGAACCGGTG
AGCCCTGAGCCGCGCAGTGTGCGTCGTACACATGTAATAGTTGCAAGAGC
CCATTGGACGCTTGTGGTATGTTGTACGTTGGCAGCACGTGCAGCTCACC
ATACCGCAAATTTCCTCCGTTGGCCCCCCGCCCCTCCGCAACCACCCCAT
CCCCGTTGTTTTTGCTAGATCAATGTTTTCGTGCTCTCTCTCACCATTTC
CACTCGAACACATGAGTTCAATGCCCCGTTTCTGTGTCATCGCGGTCTGG
CACGTTCAATGTCAGCCACGACTCCCTTACGCCCGCCACTCAATCCGCGG
TACTTCCCCGTTGCTGCAACCCAACGCCCATATATACCCCATCCCCCATC
TCACCGTTTTTTTTTTTTTCTTGCCTCGTCTCTGAATGTAATAACTCGAT
ACTGGTATCTACACCGCCGGACAACTCGGCCTTGGCGTTTATTCTAGGCG
CCGGACGCGCCGCCGTCTCGACCCGTTCGCTCCGCCGGGCGCAAGCGCAA
GGGAAACCCGTTCGCGGCGTTGGGAGACGACGGTTCCGATTCCGATTCCG
ACTCCGGGTCCTTGGGTGCGGCGGGAGGCCGCGTTGGCACCAACTCGAAC
GGTCGAACGTCGAGCTCGAAGCCTGCCCAGAGAACGGGGGGACTGTTCAC
GAACAGCACCGGTCGCGCGTTCGGCAGCGGCCCGCCGGCGGAGGAGGGAG
GCGGTCTCATGGCGTTCGCGTCTCCATCGAGCTTCGCCGGATTTTCTGGC
GCCGGGGGCGGCGCGGGGGCGGGGGGGATGGGATCGGTGGGGTTCGGAGG
GTCGAAAGGGGGTGCGCTTGCTGGTGCTGCCGCCGCGGTGGCGACGATGG
GAGCAGGGCCCCAACCCGCCGCTTCAGCAGCGAGTGTTGGTGGTGGTGCC
GGCGATGCCGATGACGATGATGATCCCGACTTGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1693:10829..14464- >mRNA_E-siliculosus-1a_F_contig1693.3889.1 ID=mRNA_E-siliculosus-1a_F_contig1693.3889.1|Name=mRNA_E-siliculosus-1a_F_contig1693.3889.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1968bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1693:10829..14464- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCAAAGCCAACAGAGGAGGACAGAAGCGAAAGGAAGCCCCTGCGCG
GAAGCAGCTGCAGGGAAGGGGCGGAAGCAGCGGATTGCTACACAAAAACA
ACCATAAACATCATGGAGGGGCTCATCGCGCGGCAGGATTGGACGGTGAG
ATTTTGAGTCAGCGAGGATGGGCAAAGCCAACAGAGGAGGACAGAAGCGA
AAGGAAGCCCCTGCGCGGAAGCAGCTGCAGGGAAGGGGCGGAAGCAGCGG
ATTGCTACACAAAAACAACCATAAACATCATGGAGGGGCTCATCGCGCGG
CAGGATTGGACGGTGAGATTTTGAGTCAGCGAGGGAGAACGCTGGCCCAG
CAGCTGTTGCAGCCGAACAAACGAGCCCGCGGCGGCAAGAGACGTCGGAA
GTCCAGTGGTACCCCGTCCAAGGAGAACGCTGGCCCAGCAGCTGTTGCAG
CCGAACAAACGAGCCCGCGGCGGCAAGAGACGTCGGAAGTCCAGTGGTAC
CCCGTCCAAGCCGGGATCGTCGGAGACTGCCGTGATTCAAGCGGAGTACG
CCGCCGTGGACGCCCGCGAGAGGGCCAAGGAAGACTCGGAAAAAGCGAGG
CGTCTGCGCGCTCCCGTGAGGATCAGGCTCGCGCCTTCGACGACGGAGCT
GCGCATGCCGAGCGAAGGCCGGGATCGTCGGAGACTGCCGTGATTCAAGC
GGAGTACGCCGCCGTGGACGCCCGCGAGAGGGCCAAGGAAGACTCGGAAA
AAGCGAGGCGTCTGCGCGCTCCCGTGAGGATCAGGCTCGCGCCTTCGACG
ACGGAGCTGCGCATGCCGAGCGAAGGCGAGGTGTCCATGGCGTCGCTCCG
AGCGTCGAGCTCCGCTCGCATGGTCGAAGCTCTTCTGCAGAGCATTACCG
ACGAACCGCGAGGTGTCCATGGCGTCGCTCCGAGCGTCGAGCTCCGCTCG
CATGGTCGAAGCTCTTCTGCAGAGCATTACCGACGAACCGGCGCCGGACG
CGCCGCCGTCTCGACCCGTTCGCTCCGCCGGGCGCAAGCGCAAGGGAAAC
CCGTTCGCGGCGTTGGGAGACGACGGTTCCGATTCCGATTCCGACTCCGG
GTCCTTGGGTGCGGCGGGAGGCCGCGTTGGCACCAACTCGAACGGTCGAA
CGTCGAGCTCGAAGCCTGCCCAGAGAACGGGGGGACTGTTCACGAACAGC
ACCGGTCGCGCGTTCGGCAGCGGCCCGCCGGCGGAGGAGGGAGGCGGTCT
CATGGCGTTCGCGTCTCCATCGAGCTTCGCCGGATTTTCTGGCGCCGGGG
GCGGCGCGGGGGCGGGGGGGATGGGATCGGTGGGGTTCGGAGGGTCGAAA
GGGGGTGCGCTTGCTGGTGCTGCCGCCGCGGTGGCGACGATGGGAGCAGG
GCCCCAACCCGCCGCTTCAGCAGCGAGTGTTGGTGGTGGTGCCGGCGATG
CCGATGACGATGATGATCCCGACTTGTGAGCGCCGGACGCGCCGCCGTCT
CGACCCGTTCGCTCCGCCGGGCGCAAGCGCAAGGGAAACCCGTTCGCGGC
GTTGGGAGACGACGGTTCCGATTCCGATTCCGACTCCGGGTCCTTGGGTG
CGGCGGGAGGCCGCGTTGGCACCAACTCGAACGGTCGAACGTCGAGCTCG
AAGCCTGCCCAGAGAACGGGGGGACTGTTCACGAACAGCACCGGTCGCGC
GTTCGGCAGCGGCCCGCCGGCGGAGGAGGGAGGCGGTCTCATGGCGTTCG
CGTCTCCATCGAGCTTCGCCGGATTTTCTGGCGCCGGGGGCGGCGCGGGG
GCGGGGGGGATGGGATCGGTGGGGTTCGGAGGGTCGAAAGGGGGTGCGCT
TGCTGGTGCTGCCGCCGCGGTGGCGACGATGGGAGCAGGGCCCCAACCCG
CCGCTTCAGCAGCGAGTGTTGGTGGTGGTGCCGGCGATGCCGATGACGAT
GATGATCCCGACTTGTGA back to top
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