mRNA_E-siliculosus-1a_F_contig16921.3885.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16921.3885.1
Unique NamemRNA_E-siliculosus-1a_F_contig16921.3885.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: A0A7Y3F341_9FLAO (Uncharacterized protein n=2 Tax=Eudoraea TaxID=446680 RepID=A0A7Y3F341_9FLAO)

HSP 1 Score: 94.7 bits (234), Expect = 1.450e-24
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MKTILL+KEIY +GF+NLGN +VK+YFK FAWFSF MF IVLYAL+YRISTGFAFD
Sbjct:    1 MKTILLIKEIYKEGFRNLGNIMVKKYFKAFAWFSFIMFFIVLYALIYRISTGFAFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: UPI0015626387 (hypothetical protein n=1 Tax=Kriegella sp. EG-1 TaxID=2664451 RepID=UPI0015626387)

HSP 1 Score: 94.7 bits (234), Expect = 1.450e-24
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MKTILL+KEIYA+GFKNLGN I+K +FKFFAWFSF MFVIV+YA ++R+STGF FD
Sbjct:    1 MKTILLIKEIYAEGFKNLGNLIIKNFFKFFAWFSFIMFVIVVYAFIFRVSTGFPFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: UPI001939F14E (hypothetical protein n=1 Tax=Aurantibacter crassamenti TaxID=1837375 RepID=UPI001939F14E)

HSP 1 Score: 93.6 bits (231), Expect = 4.170e-24
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MKT+LL+KEIY +GFKNLGN IVK+YFKFFAWFSF MF IVLYA ++R+STGF F+
Sbjct:    1 MKTVLLIKEIYTEGFKNLGNLIVKKYFKFFAWFSFIMFAIVLYAFIFRVSTGFPFE 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: A0A1G9KHI7_9FLAO (Uncharacterized protein n=1 Tax=Kriegella aquimaris TaxID=192904 RepID=A0A1G9KHI7_9FLAO)

HSP 1 Score: 91.7 bits (226), Expect = 2.420e-23
Identity = 40/56 (71.43%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MKT+LLL+E+Y +GFKNLG+ I+K+YFK FAWF+FAMF IVLYA +YR++TGFAFD
Sbjct:    1 MKTVLLLREVYIEGFKNLGSLIIKKYFKVFAWFAFAMFFIVLYAFIYRVATGFAFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: UPI0018E99C59 (hypothetical protein n=1 Tax=Robiginitalea sediminis TaxID=1982593 RepID=UPI0018E99C59)

HSP 1 Score: 90.1 bits (222), Expect = 9.860e-23
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            M T+LL+KEIY +GF+NLG+F+VKRYFK FAWFSFAMF++VLYA  YR++TGF FD
Sbjct:    1 MNTLLLIKEIYLNGFRNLGHFLVKRYFKIFAWFSFAMFLVVLYAFTYRLATGFPFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: UPI001EE9E424 (hypothetical protein n=1 Tax=Poritiphilus flavus TaxID=2697053 RepID=UPI001EE9E424)

HSP 1 Score: 90.1 bits (222), Expect = 9.860e-23
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MKTI+LLKEIY DGFKNLG+++VK YFK FAWFSF MF +VLYA V+R+ TGFAFD
Sbjct:    1 MKTIVLLKEIYLDGFKNLGSYLVKNYFKAFAWFSFMMFFVVLYAFVFRVFTGFAFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: UPI001455FC5A (hypothetical protein n=7 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI001455FC5A)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-22
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MK +LL+KEIY +GF+NLG+FI+++YFK FAWFSF MF IVLYA VYRI+TGFAFD
Sbjct:    1 MKKLLLVKEIYLEGFRNLGHFIIEKYFKIFAWFSFVMFFIVLYAFVYRIATGFAFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: UPI0018E922F9 (hypothetical protein n=1 Tax=Robiginitalea sediminis TaxID=1982593 RepID=UPI0018E922F9)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-22
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MKT+LL+KEIY D FKNLGN IV+ YF+ FAWFSFAMF++VLYA V+RISTGF FD
Sbjct:    1 MKTLLLVKEIYLDAFKNLGNLIVRNYFRAFAWFSFAMFLVVLYAFVFRISTGFPFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: A0A316DWL3_9FLAO (Uncharacterized protein n=1 Tax=Maribacter polysiphoniae TaxID=429344 RepID=A0A316DWL3_9FLAO)

HSP 1 Score: 89.4 bits (220), Expect = 1.990e-22
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MKT LL+K+IY +GF+NLG+ +VK YFK FAWFSFAMF IVLYA VYR+STGFAFD
Sbjct:    1 MKTTLLIKKIYEEGFRNLGHLMVKNYFKVFAWFSFAMFFIVLYAFVYRVSTGFAFD 56          
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Match: A0A6G7J737_9FLAO (Uncharacterized protein n=11 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A6G7J737_9FLAO)

HSP 1 Score: 89.0 bits (219), Expect = 2.830e-22
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRISTGFAFD 168
            MK +LL+KEIY +GF+NLG+ IV++YFKFFAWFSF MF IVLYA VYR++TGFAFD
Sbjct:    1 MKKLLLVKEIYIEGFRNLGHIIVEKYFKFFAWFSFVMFFIVLYAFVYRMATGFAFD 56          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16921.3885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y3F341_9FLAO1.450e-2480.36Uncharacterized protein n=2 Tax=Eudoraea TaxID=446... [more]
UPI00156263871.450e-2476.79hypothetical protein n=1 Tax=Kriegella sp. EG-1 Ta... [more]
UPI001939F14E4.170e-2475.00hypothetical protein n=1 Tax=Aurantibacter crassam... [more]
A0A1G9KHI7_9FLAO2.420e-2371.43Uncharacterized protein n=1 Tax=Kriegella aquimari... [more]
UPI0018E99C599.860e-2371.43hypothetical protein n=1 Tax=Robiginitalea sedimin... [more]
UPI001EE9E4249.860e-2375.00hypothetical protein n=1 Tax=Poritiphilus flavus T... [more]
UPI001455FC5A1.400e-2273.21hypothetical protein n=7 Tax=Flavobacteriaceae Tax... [more]
UPI0018E922F91.400e-2275.00hypothetical protein n=1 Tax=Robiginitalea sedimin... [more]
A0A316DWL3_9FLAO1.990e-2275.00Uncharacterized protein n=1 Tax=Maribacter polysip... [more]
A0A6G7J737_9FLAO2.830e-2273.21Uncharacterized protein n=11 Tax=Flavobacteriaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16921contigE-siliculosus-1a_F_contig16921:458..628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size171
Model size171
Exons1
Hectar predicted targeting categorysignal anchor
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
EggNOG OGs1I55U@117743,2E6MW@1,3318G@2,4NWFR@976
Seed eggNOG ortholog886377.Murru_1347
Seed ortholog evalue5.1e-15
Seed ortholog score86.3
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928192.1796718-CDS-E-siliculosus-1a_F_contig16921:457..6281622928192.1796718-CDS-E-siliculosus-1a_F_contig16921:457..628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16921 458..628 +
1696318842.0309129-CDS-E-siliculosus-1a_F_contig16921:457..6281696318842.0309129-CDS-E-siliculosus-1a_F_contig16921:457..628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16921 458..628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16921.3885.1prot_E-siliculosus-1a_F_contig16921.3885.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16921 458..628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16921.3885.1

>prot_E-siliculosus-1a_F_contig16921.3885.1 ID=prot_E-siliculosus-1a_F_contig16921.3885.1|Name=mRNA_E-siliculosus-1a_F_contig16921.3885.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
MKTILLLKEIYADGFKNLGNFIVKRYFKFFAWFSFAMFVIVLYALVYRIS
TGFAFD*
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mRNA from alignment at E-siliculosus-1a_F_contig16921:458..628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16921.3885.1 ID=mRNA_E-siliculosus-1a_F_contig16921.3885.1|Name=mRNA_E-siliculosus-1a_F_contig16921.3885.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16921:458..628+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAACAATTTTACTTCTAAAAGAAATTTATGCAGATGGCTTCAAAAA CCTTGGAAACTTTATCGTAAAAAGATATTTCAAGTTCTTTGCATGGTTTA GTTTTGCTATGTTCGTCATTGTACTCTATGCCCTTGTATATAGAATATCT ACAGGGTTCGCCTTTGATTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16921:458..628+

>mRNA_E-siliculosus-1a_F_contig16921.3885.1 ID=mRNA_E-siliculosus-1a_F_contig16921.3885.1|Name=mRNA_E-siliculosus-1a_F_contig16921.3885.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16921:458..628+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAACAATTTTACTTCTAAAAGAAATTTATGCAGATGGCTTCAAAAA
CCTTGGAAACTTTATCGTAAAAAGATATTTCAAGTTCTTTGCATGGTTTA
GTTTTGCTATGTTCGTCATTGTACTCTATGCCCTTGTATATAGAATATCT
ACAGGGTTCGCCTTTGATTAAATGAAAACAATTTTACTTCTAAAAGAAAT
TTATGCAGATGGCTTCAAAAACCTTGGAAACTTTATCGTAAAAAGATATT
TCAAGTTCTTTGCATGGTTTAGTTTTGCTATGTTCGTCATTGTACTCTAT
GCCCTTGTATATAGAATATCTACAGGGTTCGCCTTTGATTAA
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