mRNA_E-siliculosus-1a_F_contig1689.3859.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1689.3859.1
Unique NamemRNA_E-siliculosus-1a_F_contig1689.3859.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: A0A6H5K1Z3_9PHAE (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z3_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 4.630e-111
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 1 
Query:    4 VGLGDKEDGDSAHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVSDREGXXXXXXXXXXXXXXXNAAGVCPTERNFCLRRTRAKSDES 609
            VGLGD EDGD+AHDSLWGDAAALMSAVGYGVYSTILT LCPSDDEVSMSLVLGY+GVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDF MHGKVPNPLAVLGAFLVVGGFYFVSDREGXXXXXXXXXXXXXXXNAAGVCPTER FCLRRTRAKSDES
Sbjct:  183 VGLGDNEDGDAAHDSLWGDAAALMSAVGYGVYSTILTILCPSDDEVSMSLVLGYMGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFAMHGKVPNPLAVLGAFLVVGGFYFVSDREGXXXXXXXXXXXXXXXNAAGVCPTERKFCLRRTRAKSDES 384
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: A0A5D6YBD3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBD3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.350e-33
Identity = 75/151 (49.67%), Postives = 105/151 (69.54%), Query Frame = 1 
Query:   28 GDSAHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            GD A D ++GD  AL SA  YGVY+T++  L P+++ VS+SL  G++GV N +  LP V+ L +  G+  L GLTF I+ LI  K + DNV+S  LWARA+LLT+PTVATVG SLT+P+A ++DFV H   P P+ +L + LV+ GF F++
Sbjct:  218 GDGAADHVFGDLVALFSAFMYGVYTTMIRRLIPNEESVSISLFFGFIGVINFVCLLPFVL-LFHFSGVESLSGLTFEIIGLIAIKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAILADFVFHQSAPTPVTLLASALVLSGFVFIN 367
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: A0A836CFC6_9STRA (EamA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFC6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.650e-31
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:   46 SLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVSDRE 489
            +L GDA A+++AV YGVYST+L    P D EVSM L+ GYLG  +A    PL+  LA+AP      GLT     +IV   V DNV++ +LWARA++LTTPTVA VG +LTIP AFV+DF++H  VP PL VLGA +VV GF  VS R+
Sbjct:  288 TLLGDALAVLAAVLYGVYSTLLAVHFPRDAEVSMPLLFGYLGALSAAAGAPLL-ALAHAP----FAGLTRRAAAIIVANGVFDNVLADMLWARAVVLTTPTVAAVGLALTIPFAFVTDFLLHAMVPAPLEVLGAAMVVSGFAVVSRRK 430
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: A0A2D4BFG5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFG5_PYTIN)

HSP 1 Score: 135 bits (340), Expect = 9.010e-31
Identity = 72/156 (46.15%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:   13 GDKEDGDSAHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            G  +D  SA D ++GD  AL +A  YGVY+T +  L P ++ VS++L  G+LGV N +   P V+   YA G+  L GLT  I+ L+V K + DNV+S  LWARA+LLT+PTVATVG SLT+P A +SD++ H  +P  + +L + LVV GF  ++
Sbjct:  221 GAADDASSAQDHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSIALFFGFLGVINFVALFPFVLTFHYA-GIESLSGLTHEIILLLVLKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPFAILSDYMFHQMIPGVVTLLASLLVVSGFVLIN 375
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: K3WL39_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL39_GLOUD)

HSP 1 Score: 132 bits (331), Expect = 1.440e-29
Identity = 73/155 (47.10%), Postives = 100/155 (64.52%), Query Frame = 1 
Query:   16 DKEDGDSAHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            D   GDSA D ++GD  AL SA  YGVY+T +  L P ++ VS+SL  G++GV N +  LP V+   Y  G+  L GLT  I+ LI  K + DN +S  LWARA+LLT+PTVATVG SLT+P+A ++DFV H   P  + +L + LV+ GF  ++
Sbjct:  219 DSGSGDSASDHVFGDLVALFSAFMYGVYTTAIRKLIPDEESVSISLFFGFIGVINFVCLLPFVLLFHYT-GVESLSGLTTEILLLIGVKGLFDNALSDYLWARAVLLTSPTVATVGLSLTVPLAILADFVFHQSPPTLVTLLASMLVLSGFVLIN 372
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: A0A662XRX8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRX8_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.660e-29
Identity = 73/156 (46.79%), Postives = 104/156 (66.67%), Query Frame = 1 
Query:   16 DKEDGDS-AHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            DK  GD  A D ++GD  AL +A  YGVY+T +  L P ++ VS+SL  G++G+ N +  LP V+   Y+ G+  L GLT  I+ LI  K + DNV+S  LWARA+LLT+PTVATVG SLT+P+A V+DF  HG +P+ + +L + LV+ GF  ++
Sbjct:  238 DKVSGDDGATDHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGIINMVCLLPFVLFFHYS-GVESLSGLTLEILLLIGVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPSNVTLLASALVISGFVLIN 392
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: H3GE17_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE17_PHYRM)

HSP 1 Score: 130 bits (328), Expect = 4.660e-29
Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 1 
Query:   31 DSAHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            D   D ++GD  AL +A  YGVY+T +  L P ++ VS+SL  G++GV N +  LP V+   Y+ G+  L GLT  IV LI  K + DNV+S  LWARA+LLT+PTVATVG SLT+P+A V+DF  HG +P  + +  + LV+ GF  ++
Sbjct:  231 DDGADHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGVINMVCLLPFVLVFHYS-GIESLSGLTLEIVLLIGVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPTSVTLFASALVISGFVLIN 379
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: M4BZI1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZI1_HYAAE)

HSP 1 Score: 129 bits (325), Expect = 7.590e-29
Identity = 70/146 (47.95%), Postives = 99/146 (67.81%), Query Frame = 1 
Query:   43 DSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            D + GD  AL +A  YGVY+T +  L P ++ VS+SL  G++GV N +  LP+VV L Y+ G+  L GL+  IV LI  K + DNV+S  LWARA+LLT+PTVATVG SLT+P+A V+DF  HG +P  + ++ + LV+ GF  ++
Sbjct:  221 DHVLGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGVINMVCLLPIVVVLHYS-GIESLSGLSLEIVLLISVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPMAIVADFWCHGMLPTYVTLVASALVISGFVLIN 365
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: A0A421EWT8_9STRA (EamA domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EWT8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.110e-28
Identity = 69/150 (46.00%), Postives = 99/150 (66.00%), Query Frame = 1 
Query:   31 DSAHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            D+  D   GD  AL +A  YGVY+T +  L P ++ VS+SL  G++GV N +  LP V+   Y+ G+  L GL+  I+ LI  K + DNV+S  LWARA+LLT+PTVATVG SLT+P+A V+DF  HG +P  + ++ + LV+ GF F++
Sbjct:  193 DNGADHAAGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGVINMVCLLPFVLAFHYS-GVESLSGLSLEILLLIGVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGILPTNVTLVASALVISGFVFIN 341
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Match: A0A8K1FBE9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBE9_PYTOL)

HSP 1 Score: 129 bits (323), Expect = 1.970e-28
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:   37 AHDSLWGDAAALMSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 480
            A D ++GD  AL +A  YGVY+T +  L P ++ VS++L  G+LG  N ++  P+V+   Y  G+  L GLT  I+ LI  K + DNV+S  LWARA+LLT+PTVATVG SLT+P A  SD++ H  VP+ + +L + LVV GF  ++
Sbjct:  244 AEDHVFGDIVALFAAFMYGVYTTCIRRLIPDEESVSIALFFGFLGAINFVVLFPIVIAFHYT-GIESLSGLTAEILLLIGIKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPFAIFSDYIFHQAVPSLVTLLASSLVVSGFVLIN 390
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1689.3859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z3_9PHAE4.630e-11197.03EamA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A5D6YBD3_9STRA2.350e-3349.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A836CFC6_9STRA3.650e-3154.05EamA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2D4BFG5_PYTIN9.010e-3146.15Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WL39_GLOUD1.440e-2947.10Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662XRX8_9STRA1.660e-2946.79Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
H3GE17_PHYRM4.660e-2946.67Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
M4BZI1_HYAAE7.590e-2947.95Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A421EWT8_9STRA1.110e-2846.00EamA domain-containing protein n=3 Tax=Phytophthor... [more]
A0A8K1FBE9_PYTOL1.970e-2845.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1689contigE-siliculosus-1a_F_contig1689:24798..29000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size540
Model size2141
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.EG
EggNOG OGsCOG0697@1,KOG2765@2759
EggNOG free text desc.GTPase activity
KEGG TC2.A.7.24.1,2.A.7.24.4,2.A.7.24.6
KEGG koko:K15289
Seed eggNOG ortholog2880.D8LMX8
Seed ortholog evalue1e-80
Seed ortholog score306.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1689.3859.1prot_E-siliculosus-1a_F_contig1689.3859.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1689 26327..28928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928188.5546427-UTR-E-siliculosus-1a_F_contig1689:24797..263261622928188.5546427-UTR-E-siliculosus-1a_F_contig1689:24797..26326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1689 24798..26326 -
1696318840.0183804-UTR-E-siliculosus-1a_F_contig1689:24797..263261696318840.0183804-UTR-E-siliculosus-1a_F_contig1689:24797..26326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1689 24798..26326 -
1622928188.6303632-UTR-E-siliculosus-1a_F_contig1689:28928..290001622928188.6303632-UTR-E-siliculosus-1a_F_contig1689:28928..29000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1689 28929..29000 -
1696318840.0690675-UTR-E-siliculosus-1a_F_contig1689:28928..290001696318840.0690675-UTR-E-siliculosus-1a_F_contig1689:28928..29000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1689 28929..29000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928188.570873-CDS-E-siliculosus-1a_F_contig1689:26326..266251622928188.570873-CDS-E-siliculosus-1a_F_contig1689:26326..26625Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 26327..26625 -
1696318840.0301118-CDS-E-siliculosus-1a_F_contig1689:26326..266251696318840.0301118-CDS-E-siliculosus-1a_F_contig1689:26326..26625Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 26327..26625 -
1622928188.5853686-CDS-E-siliculosus-1a_F_contig1689:27333..274521622928188.5853686-CDS-E-siliculosus-1a_F_contig1689:27333..27452Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 27334..27452 -
1696318840.0403514-CDS-E-siliculosus-1a_F_contig1689:27333..274521696318840.0403514-CDS-E-siliculosus-1a_F_contig1689:27333..27452Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 27334..27452 -
1622928188.5999355-CDS-E-siliculosus-1a_F_contig1689:28051..281581622928188.5999355-CDS-E-siliculosus-1a_F_contig1689:28051..28158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 28052..28158 -
1696318840.0507188-CDS-E-siliculosus-1a_F_contig1689:28051..281581696318840.0507188-CDS-E-siliculosus-1a_F_contig1689:28051..28158Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 28052..28158 -
1622928188.6172688-CDS-E-siliculosus-1a_F_contig1689:28913..289281622928188.6172688-CDS-E-siliculosus-1a_F_contig1689:28913..28928Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 28914..28928 -
1696318840.060911-CDS-E-siliculosus-1a_F_contig1689:28913..289281696318840.060911-CDS-E-siliculosus-1a_F_contig1689:28913..28928Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1689 28914..28928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1689.3859.1

>prot_E-siliculosus-1a_F_contig1689.3859.1 ID=prot_E-siliculosus-1a_F_contig1689.3859.1|Name=mRNA_E-siliculosus-1a_F_contig1689.3859.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=180bp
MSAVGYGVYSTILTALCPSDDEVSMSLVLGYLGVANALIFLPLVVGLAYA
PGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSL
TIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVSDREGGGVGGGSSDG
GGACCNAAGVCPTERNFCLRRTRAKSDES*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1689:24798..29000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1689.3859.1 ID=mRNA_E-siliculosus-1a_F_contig1689.3859.1|Name=mRNA_E-siliculosus-1a_F_contig1689.3859.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4203bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1689:24798..29000- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTGGGCTTGGGCGACAAGGAAGATGGCGATTCCGCGCACGACTCGCT
GTGGGGAGACGCGGCAGCGCTCATGTCTGCTGTAGGGGTGAGTTACGTGG
GTTGTATGCCGCGGCATCAGTGGAGAGAACAGTAGATTCCTATTTACAAC
CTTTGGTTGTGTTTGTTTCATGTCGGCCCTTTGTTGGTGTTCGTCGGCTC
TTTGTGGTTGCCCGTCTGTAGTAGGGTTGCTGTTGTTGCATCTGTGTTGT
GTGTGTTTCTGGTCTACGAGCACAAAATTTCCCCGTTTCGGCATTTCTTC
GCTAATGTCGTACATATGAGCTTGTATGCCTGGGTGTAGCAAACAAGGCC
GGTTGTTGGTTTGACATAATGCGTTTTTCCTTTAGTTTTCTCGCCGTCAC
TGCCGTGTTTGTCGAGCTTTGAGTCGACGCAGCAATACGAAGGTGATGAA
CGAGTGCACCTGCTGTTCATGTTTTTGTTGACATACACTTGGGGCTTTCT
GCACGCAGCAGTACATGATTTTATGGACACGCTTTGGCTTTCTGCACGCA
GCAGTACCGAGGTGCATGTACGATGCCGAAAGGAGGGAAAGCGCCACCTA
GAGCCAGAGATATTTTTAGGCGACCCTAGGGGTGGTGGATCAGAAACGCA
ATCGTTTTTGTGCAAGGATCTGCCCGGAAAGTTCTGACGGGGTGGAAATA
GTTGCGCGATTGGAACTCGTCTATATAAATCTCAATCCATTGCCCCATGG
AGTGCGCATCACAAACCTGACAGCAGGAACACCTCTTACTCTTCCTCCCC
CCACCCACCCTCGACTGGCTCTCCCTCGTGGCGGTGGTGCAGTACGGAGT
GTATTCAACGATCCTGACAGCACTATGTCCTTCCGATGACGAGGTGTCGA
TGAGTCTCGTGCTGGGGTACTTGGGAGTCGCGAACGCGTTGATATTCCTG
TGAGTAAAGTTGTACCTATGTGTTACTGCTGCTGTGCTATGAACGTGCAA
CGCAGTCGTGAGTAAAGTTGTATGTGTTGTTGCTGCTGTGCTATGTACGT
GCAACGCAGTCGTGAGTAAAGTTGTACGTGTTATTGCTGCTGTGCTATGT
ACGCGCAGCGCAGTCGTTGCGTCGCGAGCCGTTCATTGCCAGTGCCTCTA
TTGCAGCGTTAGTTTGGTGCGGTTTCATGCTAGGAGTGCTGCCGGGATGT
TGCTCGGCCTGGCCCGCACGAGATTGCGCAGCAGGCAGGCTCGGAATCGC
TCGCGCCGGAGTGACACCCCTCTTGCGAGTCCGTCGGGCGCTGTCGGTGC
TTGCCTCTCCCTGGCTCTCCCCCATTCGCAGGCGCAGGTCCTCTTCTTGC
GCGGGATGAAAAGCGACTTGACGGCCACATTCACCGCACAAACCTTCGGT
GTCTTCACACCACACCAGCCCGACTCACGGACTTCCCCTCCTATTCTCTC
CCATTCCCCTTGCCCCCCCCCCCCCCCCGTGTATTGACTGCTTCCACGCC
CCCAATCGCCTACGCTCCCCCCTTTGTATTTTGTGTCCCCGAAAACAGGC
CGCTGGTTGTCGGGCTTGCGTACGCGCCGGGCATGCATATCCTGCACGGG
CTGACATTCCACATTGTGCAGCTGATCGTCTTCAAGGCCGTCATGGACAA
CGTCATCTCCGGGCTATGTGAGAGCCGATTTGTTTAGGTAGTCTTTCTGC
GAGACCTGTTTGTTTAGTTAGCACCGTAGACGCCACTGCACTACCTCTCT
CTGTGTGTCTTCCCATCATAACACCCGCACCGTGTGCTGCAGGTTTGCTG
TTTGTGGCCATCTCTTGGCACGCACCTTGTTTGGTAGCCGCATACTCTGT
ACAAGTAGCGCGCGCGGCTTGTGGCTCTCGCTCGGCACGTATGGCGAACG
ATTGCCGCCGTTTCACTTCTAGTATTCCGCACGTCGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
CCCCCCCCCCCCACCCCNNNNNNNNNNCACAATCGCGGGCCGCGGCGGCG
GCGCCTCCCCCCCCGCCCCCGGCCCGCCCCCCCCCCCCTCTCCCCTCTTT
TTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCATTTACGCGGGGCTC
CTTGTTGTCGCAACCCTGCATTCCAATTCCCCTAACCCAACCCCTCGTCC
ACCACTCCCTTCTGTCGTGAATCTGCTGCTGACGCTATAGCGTGGTTTGC
ACGGCTTGCTCGACAGCAGTAGCGCCGATGAGAACATTTTCGAAACTCGT
GTTGTTCCCACAAGCCCCCCCCCCCTCTCCGGCTCCCCTTCCTTCTGCTA
CAAATGTTACCAATGTTTCTAATAGTGTGGGCCCGAGCGATCCTGCTCAC
GACACCAACGGTCGCCACCGTGGGGTGCTCGCTGACGATCCCGATCGCGT
TCGTGTCGGACTTCGTCATGCACGGGAAGGTGCCGAACCCCCTCGCGGTC
TTGGGGGCGTTCCTTGTCGTGGGCGGCTTTTACTTCGTCAGCGACAGGGA
GGGCGGCGGGGTCGGCGGCGGCTCCTCCGATGGGGGGGGAGCCTGCTGCA
ACGCCGCTGGGGTGTGTCCGACCGAGAGAAATTTTTGCCTCAGGAGGACA
CGGGCCAAGTCGGACGAGAGCTGATTTTTTTTTTTGTTTTGTTGGTGGTT
GTGTCTTCTTGCCGCCTCTCCTCTCTATTATCGCTGTTCCTATTTGCAGC
GTAGTTCCACTGCCAGCCACGTACGCCTTTGTGTTGGGTTTTGGGTTAGG
AGTGGGGGCGATTCACAAACGTGCGTCCTACCAGAATACCGGGGTCCTCA
AAGAGGTATTGGTGACAAACGGCACATCGGCTCTGTGCGTGGGCGTTGCT
TCTGTAGCGCTGCTGATGGCGACCATGGAGAGGCGTGTAGTTGGGTAGGA
GAAAAACATTTAGAAAAACATTTGTGGCACGCAATTCGCTGATTGGTCAA
CGCACGCTTCAACAGAGTAGCTGTTGCTGTCGCTGCCTGCACACAATGCC
GTGTTGAGATATCTCGCTGTCTGCGCGGTCTAAATAAACAGACCACATAG
CTTTTGTAGCAGCGTTTGGAGTCATCCTGTGCGACATAAAAATTAGATCG
CGGAATGTTGCATGGACACCAAGAAAGTGGGTCGAACTTCGAGCGAATGG
CATGCCGTTCAATCTACCCCGCCCGGCGGGGTTTGCTCGGGAGTTATTAG
CAACACAGCAAATATTTATTAGTTCGTCGGGCGTTGTTGGTAGCAATTTT
TCCACGTTTGCGTGTTCCCTCCCTTCCCCCGTTCACGCCTCCTTTCCAGG
GTTCGGTAGTTTTCCGTAGAGTCGGTCTTCCGGCGGAAGATGGATGTGTC
TTTGTCCTTCCTGCACCACGTTTTTCTGTGATTCCTCCCATGTACATATG
AAGCACTGGTCCCTGGCACGGGCTGCTGTGTGCCGTCCTTGTAATATACT
GACGATTGTTGCGTGGCATCGTCAGGGAGAGTCGCGGATGCGTGGGATAC
CGGTAGATGGTATTTTCCACGGGTTTTTTCTTGTACGACATTCAAAGGCT
ATGGTTCACTTGCCACGAGGGCTAGGCAACGAATGGTTGTTCGATTGGTT
TTGGAGGCCGTTGACGCTTTGTAGATAATATAGGGTTGGTGACGGCGTTT
ATTTTCTCGGCGTCTCCCGTGTATTGGTTTGACCGAACTGATACGGGAAC
AAGAACCTGTGTACATTTTAGTGCCATGTGTCGTGTCGTCATACGTCGGC
CACACTTACTTGCGTGAACCCTGAAATACTCTCCGTGCGTACTACACTAA
GCGATGGAGTTCTTGGCGGGCACGAGGTATAGACTGCTGTCATACGGAAC
GTACGAGCCCAGCTACATGTGTGTGATTCAGCAGTAAGGAGGCGTGGCGT
GGCTGAGCTCGCGGCGCATCTACTACCAGATGACGTTTGCATGGTAGGCC
GGGCCAAACATTGAACGAGCCCACCGAGGGGCCACGAGTCCACCGAGAAA
CGTACCGCAAGTTGGACCTTCTGAACAGCTTGGATTGGAAGCTTGACGAC
TTTTTGTAGGGAGTGCGTGAGTGGGGACACTGCTGTGTGGAGGAGGACGA
TGTGGACAGATTCCATCAAGGTCGCTGAGATTTTGCGCGGTCCGTTGCAG
AGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1689:24798..29000-

>mRNA_E-siliculosus-1a_F_contig1689.3859.1 ID=mRNA_E-siliculosus-1a_F_contig1689.3859.1|Name=mRNA_E-siliculosus-1a_F_contig1689.3859.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1689:24798..29000- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGCTGTAGGGATGTCTGCTGTAGGGTACGGAGTGTATTCAACGAT
CCTGACAGCACTATGTCCTTCCGATGACGAGGTGTCGATGAGTCTCGTGC
TGGGGTACTTGGGAGTCGCGAACGCGTTGATATTCCTTACGGAGTGTATT
CAACGATCCTGACAGCACTATGTCCTTCCGATGACGAGGTGTCGATGAGT
CTCGTGCTGGGGTACTTGGGAGTCGCGAACGCGTTGATATTCCTGCCGCT
GGTTGTCGGGCTTGCGTACGCGCCGGGCATGCATATCCTGCACGGGCTGA
CATTCCACATTGTGCAGCTGATCGTCTTCAAGGCCGTCATGGACAACGTC
ATCTCCGGGCTATGCCGCTGGTTGTCGGGCTTGCGTACGCGCCGGGCATG
CATATCCTGCACGGGCTGACATTCCACATTGTGCAGCTGATCGTCTTCAA
GGCCGTCATGGACAACGTCATCTCCGGGCTATTGTGGGCCCGAGCGATCC
TGCTCACGACACCAACGGTCGCCACCGTGGGGTGCTCGCTGACGATCCCG
ATCGCGTTCGTGTCGGACTTCGTCATGCACGGGAAGGTGCCGAACCCCCT
CGCGGTCTTGGGGGCGTTCCTTGTCGTGGGCGGCTTTTACTTCGTCAGCG
ACAGGGAGGGCGGCGGGGTCGGCGGCGGCTCCTCCGATGGGGGGGGAGCC
TGCTGCAACGCCGCTGGGGTGTGTCCGACCGAGAGAAATTTTTGCCTCAG
GAGGACACGGGCCAAGTCGGACGAGAGCTGATGTGGGCCCGAGCGATCCT
GCTCACGACACCAACGGTCGCCACCGTGGGGTGCTCGCTGACGATCCCGA
TCGCGTTCGTGTCGGACTTCGTCATGCACGGGAAGGTGCCGAACCCCCTC
GCGGTCTTGGGGGCGTTCCTTGTCGTGGGCGGCTTTTACTTCGTCAGCGA
CAGGGAGGGCGGCGGGGTCGGCGGCGGCTCCTCCGATGGGGGGGGAGCCT
GCTGCAACGCCGCTGGGGTGTGTCCGACCGAGAGAAATTTTTGCCTCAGG
AGGACACGGGCCAAGTCGGACGAGAGCTGA
back to top