mRNA_E-siliculosus-1a_F_contig1688.3854.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI) HSP 1 Score: 359 bits (922), Expect = 3.740e-114 Identity = 186/314 (59.24%), Postives = 228/314 (72.61%), Query Frame = 1
Query: 334 QDATTAKKEKPARFLTIIVRDQTGEDTYFKA-PSTTAMSKIKHTYCSRKGVSMAAMTFLLIDGHRVEDDETVASLELEDDDHVFAILNQSGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQAST-----SEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGGMNLNGSSHD 1257
+D T + ++ ++ ++ TG+ +A PS T + +K +G+ + G + DD T+ + + +L S KPVILLYP P+D TV +ELSPLW FS+LYPK L+Q + S+A + GGQQCKWNVHASP GSL+DLSTGREYPYLFWEADS DGRV+RSFGLD +RSFCVAG+AAGVFLD ALERLGLN+RERCDMVT WLPQLESS FN+IYFV+V+RYE+AARLTI P PD+TIR+FMAFRG A+DAELDTAKIE+LR+PAR+GFVAVEWGGMNLNG SHD
Sbjct: 144 EDTTDSVADEDENEISFSIKTLTGKQHTIRAFPSETVLD-VKKKVQDTQGIPCEQQRIIYA-GQQTSDDRTLRDCNIRNGSVAHLVL--SLRKPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSHD 453
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI) HSP 1 Score: 173 bits (439), Expect = 3.980e-48 Identity = 82/95 (86.32%), Postives = 88/95 (92.63%), Query Frame = 1
Query: 973 MRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGGMNLNGSSHD 1257
MRERCDMVTYWLPQLESS FN+IYFV+V+RYEKAARLTI PAPD+TIRIFMAFRGI A+D ELDTAK+EDLRAP RKGFVAVEWGGMNLN SHD
Sbjct: 1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLNRVSHD 95
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: D7FN69_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN69_ECTSI) HSP 1 Score: 157 bits (397), Expect = 2.630e-41 Identity = 70/100 (70.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 721 QQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLE 1020
+Q S EA++ GQ C+W VHA+PDGSL D+ST REYPYLFWEADS DG V +FGL++T SFCVAG+ AG+FLD ALERLGLN+RERCD++TYWLPQLE
Sbjct: 59 RQTSGYEAIVASGQHCEWIVHANPDGSLTDISTSREYPYLFWEADSTDGLVCGNFGLEKTPSFCVAGNDAGLFLDVALERLGLNVRERCDVITYWLPQLE 158
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: A0A1Y4WJV0_9FIRM (Uncharacterized protein n=1 Tax=Flavonifractor sp. An10 TaxID=1965537 RepID=A0A1Y4WJV0_9FIRM) HSP 1 Score: 150 bits (379), Expect = 3.470e-38 Identity = 90/213 (42.25%), Postives = 116/213 (54.46%), Query Frame = 1
Query: 601 GGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGGMNL 1239
G KPVI LYP + TVTLEL F++ YP E W V A+PDG+L D ++GR Y LFWE G + R F L + FCVAG+ FL+ AL RLGL RE + + YWLP++E +P+N+I F Y AA LTI P+PD IR+FM ++G+ E+ ++L APAR GF AVEWGG L
Sbjct: 24 GAKPVIYLYPEEETEVTVTLELD--GTFTSTYP----------DYGEG---------WTVTAAPDGTLTDPNSGRTYYCLFWE-----GIIDRQFDL--SAGFCVAGEDTAAFLEDALARLGLTEREANEFIIYWLPRMEGNPYNLISF-QTDAYTDAAELTIDPSPDTLIRVFMTWKGLE-QPVEIPA---QELTAPARTGFTAVEWGGAEL 203
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: A0A7K3KJH3_9ACTN (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A7K3KJH3_9ACTN) HSP 1 Score: 147 bits (372), Expect = 4.110e-37 Identity = 86/211 (40.76%), Postives = 117/211 (55.45%), Query Frame = 1
Query: 598 SGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGG 1230
S KPVI LYP VTLE+ S +YP ++++ TGG W V A PDG+L DLS+GRE YLFWE D+ F D ++ FCV+GD FL+ AL +LGL RE D +TYWLP+++ +P+N++ F Y + A L I P PD IR+ MA+R + +++ ++L APAR GF VEWGG
Sbjct: 24 SNEKPVIYLYPEQASVIDVTLEVEE--SLSCVYPA--------FASAQPTDTGGT---WRVFAQPDGTLTDLSSGRELGYLFWEGDA-------GFSPDFSQGFCVSGDDMRAFLEDALSKLGLTDREAADFITYWLPRMQENPYNLVSFQG-DAYARVACLGIDPEPDTVIRVQMAWRPLEV-PVQIEP---QELTAPARNGFTVVEWGG 209
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: A0A096CD36_FLAPL (Uncharacterized protein n=14 Tax=Eubacteriales TaxID=186802 RepID=A0A096CD36_FLAPL) HSP 1 Score: 140 bits (354), Expect = 1.200e-34 Identity = 84/209 (40.19%), Postives = 113/209 (54.07%), Query Frame = 1
Query: 604 GKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGG 1230
KPV+ LYP + TVTL+ ++ YP W V A PDG+L D +TGREY LFWE G + D + FCVAG+ FL+ AL+RLGL RE + + YWLP+LE +P+N++ F + Y +A LTI PAPD IR+F+A++G+ DA ++ + L APAR GF AVEWGG
Sbjct: 31 AKPVLYLYPEEETEVTVTLDFD--GTLTSTYPDYGDG-------------------WTVTARPDGTLTDPATGREYYCLFWE-----GITEAEY--DFSTGFCVAGEDTAAFLEDALDRLGLTGREADEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGL---DAPVEIEP-QTLTAPARTGFTAVEWGG 206
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: A0A096B0K5_FLAPL (Uncharacterized protein n=19 Tax=Eubacteriales TaxID=186802 RepID=A0A096B0K5_FLAPL) HSP 1 Score: 140 bits (352), Expect = 2.190e-34 Identity = 87/222 (39.19%), Postives = 119/222 (53.60%), Query Frame = 1
Query: 592 NQSGG-----KPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGGMNLN 1242
N SG KPV+ LYP ++ TVTL+ ++ YP A G W V A PDG+L + +TGREY LFWE G + D + FCVAG+ FL+ AL+RLGL RE + + YWLP+LE +P+N++ F Y +A LTI PAPD IR+F+A++G+ DA ++ + L AP R GF AVEWGG ++
Sbjct: 22 NSSGNVAVPEKPVLYLYPEEEMEVTVTLDFD--GTLTSTYP--------------AYGDG-----WTVTARPDGTLTNPATGREYYCLFWE-----GITEAEY--DFSAGFCVAGEDTAAFLEDALDRLGLTEREADEFIIYWLPKLEGNPYNLLSF-QTDAYTDSAALTIDPAPDTLIRVFLAWKGL---DAPVEVEP-QTLTAPERTGFTAVEWGGAEVD 210
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: A0A7X5D8X7_9CLOT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7X5D8X7_9CLOT) HSP 1 Score: 139 bits (350), Expect = 2.470e-34 Identity = 84/209 (40.19%), Postives = 108/209 (51.67%), Query Frame = 1
Query: 604 GKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGG 1230
KPVI LYP P V LEL YP + ++ S SE W V A PDG+L DL GREY YLFWE + D R FC+AG FL+ AL +LGL +E D +TYWLPQ++ +P+N+I F Y++ ARLT+ P PD IR+FMA+ + E + + L A R+GF VEWGG
Sbjct: 4 AKPVIYLYPKEPCVVEVALELE--GTVGMAYP----AFNEERSASEG--------SWKVQADPDGTLSDLRVGREYGYLFWEGVG-------DWEPDFDRGFCIAGADTAEFLEDALRQLGLTDKEADDFITYWLPQMQGNPYNLIAFQG-GAYDRTARLTVDPQPDTIIRVFMAWMRLD----EPVVVEPQVLSAAPREGFAVVEWGG 186
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: UPI00195CE3B4 (hypothetical protein n=1 Tax=Pseudoflavonifractor phocaeensis TaxID=1870988 RepID=UPI00195CE3B4) HSP 1 Score: 139 bits (351), Expect = 2.690e-34 Identity = 86/214 (40.19%), Postives = 114/214 (53.27%), Query Frame = 1
Query: 604 GKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGGMNLNG 1245
KPVI LYP +VTL+ +A YP A G W V ASPDG+L D +TGR+Y LFWE G R++ D + FCVAG+ FL+ AL +LGL +E + + YWLP++E +P+N+I F Y A LTI PAPD IR+FMA+RG+ D ++ A + AP+R GF VEWGG + G
Sbjct: 26 AKPVIYLYPEEETRVSVTLDFD--GDLTATYP--------------AYGEG-----WMVDASPDGTLTDPATGRQYYCLFWE-----GVTDRTY--DFSNGFCVAGEDTAAFLEDALAQLGLTDKEADEFIIYWLPKMEHNPYNLISF-QTTAYTDGAELTIDPAPDTLIRVFMAWRGL---DKPVEIAP-QTFTAPSRTGFTTVEWGGAEVKG 206
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Match: UPI00102F4506 (hypothetical protein n=1 Tax=Intestinimonas massiliensis TaxID=1673721 RepID=UPI00102F4506) HSP 1 Score: 138 bits (347), Expect = 1.010e-33 Identity = 81/215 (37.67%), Postives = 112/215 (52.09%), Query Frame = 1
Query: 586 ILNQSGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAVLTGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSCDGRVSRSFGLDETRSFCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNIIYFVDVKRYEKAARLTIAPAPDLTIRIFMAFRGIRAHDAELDTAKIEDLRAPARKGFVAVEWGG 1230
++ + KPVI LYP +VTL+ + +F++ YP + W V A+PDG+L D TGR+Y LFWE + D + FCVAG FL+GAL LGL +E + + YWLP++E +P+N+I F Y +A+LTI PAPD IR+FMA++G+ E + L AP R GF AVEWGG
Sbjct: 22 VMEATTEKPVIYLYPEEETRVSVTLDYN--GQFTSTYPS-------------------YKDGWTVDAAPDGTLTDPDTGRQYYCLFWEGVT-------EVEYDFSTGFCVAGADTAAFLEGALADLGLTEKEANEFIIYWLPRMEHNPYNLISF-QTTAYTDSAKLTIDPAPDTLIRVFMAWQGVE----EQVEVPPQTLTAPQRSGFTAVEWGG 203 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1688.3854.1 >prot_E-siliculosus-1a_F_contig1688.3854.1 ID=prot_E-siliculosus-1a_F_contig1688.3854.1|Name=mRNA_E-siliculosus-1a_F_contig1688.3854.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=417bp MTSLRILQKKGELLQEEKLILLRRQETLPLGIKKGAPVAAASAPQAPDPPback to top mRNA from alignment at E-siliculosus-1a_F_contig1688:20321..28182- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1688.3854.1 ID=mRNA_E-siliculosus-1a_F_contig1688.3854.1|Name=mRNA_E-siliculosus-1a_F_contig1688.3854.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7862bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1688:20321..28182- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1688:20321..28182- >mRNA_E-siliculosus-1a_F_contig1688.3854.1 ID=mRNA_E-siliculosus-1a_F_contig1688.3854.1|Name=mRNA_E-siliculosus-1a_F_contig1688.3854.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2502bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1688:20321..28182- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |