mRNA_E-siliculosus-1a_F_contig1688.3852.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1688.3852.1
Unique NamemRNA_E-siliculosus-1a_F_contig1688.3852.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.220e-111
Identity = 172/230 (74.78%), Postives = 196/230 (85.22%), Query Frame = 1 
Query:  583 ARLIQSGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASS-----SEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFGLDVTRSFCVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNLNGSSRD 1257
            A L+ S  KPVILLYP  P+D TV +ELSPLW FS+LYPK     L+Q ++     S+A +AGGQQCKWNVHASP GSL+DLSTGREYPYLFWEADS+DGRV+RSFGLD +RSFCVAG+AAGVFLD ALERLGL++RERCDMVT WLPQLESS FN+IYFV+VERYE+AA LTI P PDV IR+FMAFRG  AYDAELDTAK+E+LR+PAR+GFVAVEWGGMNLNG S D
Sbjct:  224 AHLVLSLRKPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSHD 453
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 6.470e-49
Identity = 84/95 (88.42%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:  973 MRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNLNGSSRD 1257
            MRERCDMVTYWLPQLESSAFN+IYFV+VERYEKAA LTI PAPDV IRIFMAFRG DAYD ELDTAKMEDLRAP RKGFVAVEWGGMNLN  S D
Sbjct:    1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLNRVSHD 95
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: D7FN69_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN69_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.170e-40
Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:  721 QQASSSEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFGLDVTRSFCVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLE 1020
            +Q S  EA +A GQ C+W VHA+PDGSL D+ST REYPYLFWEADSTDG V  +FGL+ T SFCVAG+ AG+FLD ALERLGL++RERCD++TYWLPQLE
Sbjct:   59 RQTSGYEAIVASGQHCEWIVHANPDGSLTDISTSREYPYLFWEADSTDGLVCGNFGLEKTPSFCVAGNDAGLFLDVALERLGLNVRERCDVITYWLPQLE 158
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: A0A1Y4WJV0_9FIRM (Uncharacterized protein n=1 Tax=Flavonifractor sp. An10 TaxID=1965537 RepID=A0A1Y4WJV0_9FIRM)

HSP 1 Score: 150 bits (380), Expect = 2.250e-38
Identity = 89/213 (41.78%), Postives = 119/213 (55.87%), Query Frame = 1 
Query:  601 GGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFGLDVTRSFCVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            G KPVI LYP    + TVTLEL     F++ YP                   G    W V A+PDG+L D ++GR Y  LFWE     G + R F  D++  FCVAG+    FL+ AL RLGL+ RE  + + YWLP++E + +N+I F   + Y  AA LTI P+PD +IR+FM ++G +    E+     ++L APAR GF AVEWGG  L
Sbjct:   24 GAKPVIYLYPEEETEVTVTLELD--GTFTSTYPD---------------YGEG----WTVTAAPDGTLTDPNSGRTYYCLFWE-----GIIDRQF--DLSAGFCVAGEDTAAFLEDALARLGLTEREANEFIIYWLPRMEGNPYNLISF-QTDAYTDAAELTIDPSPDTLIRVFMTWKGLEQ-PVEIPA---QELTAPARTGFTAVEWGGAEL 203
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: A0A7K3KJH3_9ACTN (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A7K3KJH3_9ACTN)

HSP 1 Score: 149 bits (375), Expect = 1.410e-37
Identity = 88/220 (40.00%), Postives = 122/220 (55.45%), Query Frame = 1 
Query:  580 DARLIQSGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFGLDVTRSFCVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            D R   S  KPVI LYP       VTLE+      S +YP          +S++ T  GG    W V A PDG+L DLS+GRE  YLFWE D+        F  D ++ FCV+GD    FL+ AL +LGL+ RE  D +TYWLP+++ + +N++ F   + Y + A L I P PD +IR+ MA+R  +    +++    ++L APAR GF  VEWGG  +
Sbjct:   18 DVRKDPSNEKPVIYLYPEQASVIDVTLEVEE--SLSCVYPA--------FASAQPTDTGGT---WRVFAQPDGTLTDLSSGRELGYLFWEGDA-------GFSPDFSQGFCVSGDDMRAFLEDALSKLGLTDREAADFITYWLPRMQENPYNLVSFQG-DAYARVACLGIDPEPDTVIRVQMAWRPLEV-PVQIEP---QELTAPARNGFTVVEWGGTQV 212
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: A0A096CD36_FLAPL (Uncharacterized protein n=14 Tax=Eubacteriales TaxID=186802 RepID=A0A096CD36_FLAPL)

HSP 1 Score: 144 bits (363), Expect = 6.200e-36
Identity = 86/213 (40.38%), Postives = 116/213 (54.46%), Query Frame = 1 
Query:  601 GGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFGLDVTRSFCVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
              KPV+ LYP    + TVTL+       ++ YP                   G    W V A PDG+L D +TGREY  LFWE     G     +  D +  FCVAG+    FL+ AL+RLGL+ RE  + + YWLP+LE + +N++ F   E Y  +A LTI PAPD +IR+F+A++G DA   E++    + L APAR GF AVEWGG  +
Sbjct:   30 SAKPVLYLYPEEETEVTVTLDFD--GTLTSTYPD---------------YGDG----WTVTARPDGTLTDPATGREYYCLFWE-----GITEAEY--DFSTGFCVAGEDTAAFLEDALDRLGLTGREADEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGLDA-PVEIEP---QTLTAPARTGFTAVEWGGAEV 209
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: A8NLI4_COPC7 (Ubiquitin-like domain-containing protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=A8NLI4_COPC7)

HSP 1 Score: 149 bits (377), Expect = 1.310e-35
Identity = 103/324 (31.79%), Postives = 147/324 (45.37%), Query Frame = 1 
Query:  397 DQTGEETCFKVRSTTAMSKMIDMYCSMKGVSMAAMMFLLDGHRVGYDE-TPASLELEDEDQIDARLIQSGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADST-------------------DGRVSRSF-----GLDVTRSFCVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAK-----------------MEDLRAPARKGFVAVEWGGMNLN 1242
            + TG+    KV+  + +  + D    + G++  A   L  G RV     T A   ++  D I    +  GGKPVI L+  V  + +V L L P W FSA+YP  P           A+   GQ+ +W V  S DGSL++ +TG E  YLFWEA++T                   DG +   F      L    S  V       +LDGAL+ LGL    R   +TYWLP +    +  + F+    YE+AA L I PAPDV++RIFM F+G D  + E D  +                 ++  +A   + F  VEWGGM ++
Sbjct:  115 EPTGQRVTVKVKPDSKIGILHDAIEKVLGIARDAQRLLYGGRRVDITSGTFADYGIKSGDTIIVYNVLRGGKPVIYLFSPVEREVSVKLSLVPQWEFSAIYPVVPVKT--------ASAGSGQEIEWTVTTSADGSLKERTTGLEVAYLFWEAETTRVAPLSPPPTPTIAATDPGDGPLQEVFVPNDAHLCSENSVVVETSKVTPYLDGALKALGLHTEARTSFITYWLPAILKHEYVALRFLPQSAYERAAPLDITPAPDVVLRIFMLFKGVDQGELEEDWKQAAYRATEPVGRWVQVVGVDVPKATDPQSFRVVEWGGMEIH 430
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: A0A8H8JTL5_9AGAM (Polyubiquitin-C n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JTL5_9AGAM)

HSP 1 Score: 147 bits (370), Expect = 1.030e-34
Identity = 109/332 (32.83%), Postives = 150/332 (45.18%), Query Frame = 1 
Query:  385 IKVRDQTGEETCFKVRSTTAMSKMIDMYCSMKGVSMAAMMFLL--DGHRVGYDETPASLELEDEDQIDARLIQSGGKPVILLYPSVP-LDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFG--------------LDVTRSFCVAGDAAGV-------FLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRG-----------------------TDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            + +R  TGEET  K+     +S+++ +  ++ G+  A    L+  D HR+  ++T     + D D+I A + Q GGKPVI L+P  P LD  + L L   W FSALYP  P         +  +   GQ   W V A PDG+L D  T RE  YLFWEA +         G               D  R    + DA  +       ++D AL  LGL    R   +TYWLP L+  +F  + F+   +YE AA + I PAPDV+ R+FM F+G                       TD    +LD AK E L       F  +EWGGM +
Sbjct:  108 VTIRRATGEETILKISLDILVSELLSIVGTI-GIYKAGHFALIGPDCHRLSANKTLRQQGVNDGDEIYAVMEQIGGKPVIYLFPPTPTLDIRLELGLVESWSFSALYPAAPIL-------TPVSTTHGQSVSWTVDAKPDGALFDRHTQREISYLFWEAHTQPSAPISPAGSRACTPTIPGNAKTFDPARYQISSSDAVLLPFDKITSYIDDALLSLGLHTEARTSFITYWLPSLQRHSFIALCFLPQSQYEAAAPMKIEPAPDVVSRVFMVFKGVEKSQLGAWSEAHTRASMNPSMWTDIVGIKLDMAKDEKL-------FRVLEWGGMEI 424
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: A0A8H7DML9_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7DML9_9AGAR)

HSP 1 Score: 146 bits (369), Expect = 1.240e-34
Identity = 105/316 (33.23%), Postives = 150/316 (47.47%), Query Frame = 1 
Query:  397 DQTGEETCFKVRSTTAMSKMIDMYCSMKGVSMAAMMFLLDGHRVGYDETPASLELEDEDQIDARLIQSGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAG-GQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDG--------------RVSRSFGLDVTRSFCVAGDAAGV-----FLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTD---------AYDAELDTAKMEDL------RAPARKGFVAVEWGGMNL 1239
            DQ+      K+++TT   K   +  +   +    M++  DG R+  D+TPA +++ED+D ID  L Q GGKPVI +Y     D +V L L+  W  SA+YP           S++A  +G G++ +WNV    +GSL +L+TG +  YLFWEA +  G                ++SF    +  F V      V     +LD  L  L L    R   +TYWLP L       + FV  E YE AA L I P P+V+ RIFM F+G D         A  A  DT + +++      RA     F  +EWGGM +
Sbjct:  111 DQSSRALVMKMKATTPFRKASHLISTQLVLDDFDMVY--DGCRLRLDQTPADVDMEDQDSIDIILKQRGGKPVIYVYSPTETDVSVALTLTREWSLSAIYP---------VVSTKALPSGTGERIQWNVRTRSNGSLTELNTGLDVAYLFWEAHTNHGIPASPPTSPVAGSFPTTQSFSPLTSDLFPVDSVLIAVRDITPYLDKVLAGLALHTEARTSFITYWLPSLLKHKHVALRFVPQEAYEIAAPLDIQPVPEVVTRIFMLFKGIDDDALTEWENAKAAADDTERWKEVVGGDFERADDASLFRVLEWGGMEV 415
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BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Match: A0A096B0K5_FLAPL (Uncharacterized protein n=19 Tax=Eubacteriales TaxID=186802 RepID=A0A096B0K5_FLAPL)

HSP 1 Score: 140 bits (353), Expect = 1.460e-34
Identity = 84/212 (39.62%), Postives = 118/212 (55.66%), Query Frame = 1 
Query:  607 KPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAGGQQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFGLDVTRSFCVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNLN 1242
            KPV+ LYP   ++ TVTL+       ++ YP                 A G    W V A PDG+L + +TGREY  LFWE     G     +  D +  FCVAG+    FL+ AL+RLGL+ RE  + + YWLP+LE + +N++ F   + Y  +A LTI PAPD +IR+F+A++G DA   E++    + L AP R GF AVEWGG  ++
Sbjct:   32 KPVLYLYPEEEMEVTVTLDFD--GTLTSTYP-----------------AYGDG--WTVTARPDGTLTNPATGREYYCLFWE-----GITEAEY--DFSAGFCVAGEDTAAFLEDALDRLGLTEREADEFIIYWLPKLEGNPYNLLSF-QTDAYTDSAALTIDPAPDTLIRVFLAWKGLDA-PVEVEP---QTLTAPERTGFTAVEWGGAEVD 210
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1688.3852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI1.220e-11174.78Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FJP3_ECTSI6.470e-4988.42Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
D7FN69_ECTSI1.170e-4071.00Ubiquitin family protein n=1 Tax=Ectocarpus silicu... [more]
A0A1Y4WJV0_9FIRM2.250e-3841.78Uncharacterized protein n=1 Tax=Flavonifractor sp.... [more]
A0A7K3KJH3_9ACTN1.410e-3740.00Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A096CD36_FLAPL6.200e-3640.38Uncharacterized protein n=14 Tax=Eubacteriales Tax... [more]
A8NLI4_COPC71.310e-3531.79Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A8H8JTL5_9AGAM1.030e-3432.83Polyubiquitin-C n=1 Tax=Ceratobasidium sp. AG-Ba T... [more]
A0A8H7DML9_9AGAR1.240e-3433.23Ubiquitin-like domain-containing protein n=1 Tax=M... [more]
A0A096B0K5_FLAPL1.460e-3439.62Uncharacterized protein n=19 Tax=Eubacteriales Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1688contigE-siliculosus-1a_F_contig1688:4312..9076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1251
Model size1977
Exons8
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG1552@1,KOG0003@2759
EggNOG free text desc.protein tag
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG koko:K02977,ko:K02983,ko:K08770
Seed eggNOG ortholog2880.D7G4B4
Seed ortholog evalue2.3e-96
Seed ortholog score359.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1688.3852.1prot_E-siliculosus-1a_F_contig1688.3852.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1688 5418..9067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.3567271-UTR-E-siliculosus-1a_F_contig1688:4311..49581622928187.3567271-UTR-E-siliculosus-1a_F_contig1688:4311..4958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1688 4312..4958 -
1696318839.4033782-UTR-E-siliculosus-1a_F_contig1688:4311..49581696318839.4033782-UTR-E-siliculosus-1a_F_contig1688:4311..4958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1688 4312..4958 -
1622928187.4320693-UTR-E-siliculosus-1a_F_contig1688:5347..54171622928187.4320693-UTR-E-siliculosus-1a_F_contig1688:5347..5417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1688 5348..5417 -
1696318839.4167445-UTR-E-siliculosus-1a_F_contig1688:5347..54171696318839.4167445-UTR-E-siliculosus-1a_F_contig1688:5347..5417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1688 5348..5417 -
1622928187.5264592-UTR-E-siliculosus-1a_F_contig1688:9067..90761622928187.5264592-UTR-E-siliculosus-1a_F_contig1688:9067..9076Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1688 9068..9076 -
1696318839.5089312-UTR-E-siliculosus-1a_F_contig1688:9067..90761696318839.5089312-UTR-E-siliculosus-1a_F_contig1688:9067..9076Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1688 9068..9076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.4448545-CDS-E-siliculosus-1a_F_contig1688:5417..55441622928187.4448545-CDS-E-siliculosus-1a_F_contig1688:5417..5544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 5418..5544 -
1696318839.426389-CDS-E-siliculosus-1a_F_contig1688:5417..55441696318839.426389-CDS-E-siliculosus-1a_F_contig1688:5417..5544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 5418..5544 -
1622928187.4608464-CDS-E-siliculosus-1a_F_contig1688:5890..60921622928187.4608464-CDS-E-siliculosus-1a_F_contig1688:5890..6092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 5891..6092 -
1696318839.4371746-CDS-E-siliculosus-1a_F_contig1688:5890..60921696318839.4371746-CDS-E-siliculosus-1a_F_contig1688:5890..6092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 5891..6092 -
1622928187.471058-CDS-E-siliculosus-1a_F_contig1688:6286..64761622928187.471058-CDS-E-siliculosus-1a_F_contig1688:6286..6476Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 6287..6476 -
1696318839.448245-CDS-E-siliculosus-1a_F_contig1688:6286..64761696318839.448245-CDS-E-siliculosus-1a_F_contig1688:6286..6476Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 6287..6476 -
1622928187.4800189-CDS-E-siliculosus-1a_F_contig1688:6994..73631622928187.4800189-CDS-E-siliculosus-1a_F_contig1688:6994..7363Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 6995..7363 -
1696318839.457221-CDS-E-siliculosus-1a_F_contig1688:6994..73631696318839.457221-CDS-E-siliculosus-1a_F_contig1688:6994..7363Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 6995..7363 -
1622928187.489471-CDS-E-siliculosus-1a_F_contig1688:7644..77121622928187.489471-CDS-E-siliculosus-1a_F_contig1688:7644..7712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 7645..7712 -
1696318839.4670486-CDS-E-siliculosus-1a_F_contig1688:7644..77121696318839.4670486-CDS-E-siliculosus-1a_F_contig1688:7644..7712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 7645..7712 -
1622928187.5030146-CDS-E-siliculosus-1a_F_contig1688:8273..84471622928187.5030146-CDS-E-siliculosus-1a_F_contig1688:8273..8447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 8274..8447 -
1696318839.4807074-CDS-E-siliculosus-1a_F_contig1688:8273..84471696318839.4807074-CDS-E-siliculosus-1a_F_contig1688:8273..8447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 8274..8447 -
1622928187.5144866-CDS-E-siliculosus-1a_F_contig1688:8946..90671622928187.5144866-CDS-E-siliculosus-1a_F_contig1688:8946..9067Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 8947..9067 -
1696318839.491849-CDS-E-siliculosus-1a_F_contig1688:8946..90671696318839.491849-CDS-E-siliculosus-1a_F_contig1688:8946..9067Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1688 8947..9067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1688.3852.1

>prot_E-siliculosus-1a_F_contig1688.3852.1 ID=prot_E-siliculosus-1a_F_contig1688.3852.1|Name=mRNA_E-siliculosus-1a_F_contig1688.3852.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=417bp
MTSLRILQKKGELLQEEKLILLRRQEALPIGIRKRAPVAAASPPQAPDPP
ENSDTSSASGARGGAKRKSAEQPEDEQSRHSNGTRRSSRLPAARETSNAD
GRSAVDTQQQDATTAKKEEPARSLTIKVRDQTGEETCFKVRSTTAMSKMI
DMYCSMKGVSMAAMMFLLDGHRVGYDETPASLELEDEDQIDARLIQSGGK
PVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASSSEATLAGG
QQCKWNVHASPDGSLEDLSTGREYPYLFWEADSTDGRVSRSFGLDVTRSF
CVAGDAAGVFLDGALERLGLSMRERCDMVTYWLPQLESSAFNIIYFVDVE
RYEKAAHLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGF
VAVEWGGMNLNGSSRD*
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mRNA from alignment at E-siliculosus-1a_F_contig1688:4312..9076-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1688.3852.1 ID=mRNA_E-siliculosus-1a_F_contig1688.3852.1|Name=mRNA_E-siliculosus-1a_F_contig1688.3852.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4765bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1688:4312..9076- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATGAACTCATGACGAGTCTAAGGATCCTGCAGAAGAAAGGAGAGCTTCT
TCAAGAGGAAAAGCTTATTCTACTACGCCGTCAAGAGGCTTTGCCGATCG
GCATAAGGAAGAGAGCGCCCGTAGCTGCTGGTGAGCCACTTCTTTGGGCA
CAGAGAGAGAAAGTATCCACAGCCATGTGCTCTCCATGAGGAATTGATTG
GGGTGGTGAACACATGGGCGTAATGTCGCAAGCAGCACCGAGAGCAGGAG
TACGAAGCGTGTCTTGCCGGCGAGGGGTTGAAGCGTGCAGCAGTGGCAAG
GGACGGTGCAGACGGGAGCCTTGGGCGACGTGTCCCATGCGAAGTTGTGT
TGCCCGGGGTAACGCTGCCTTTCAGAACGACAGCGTTCTCGCTGCTCTTG
ACATTAACTAGGTTTGGCCTGGTCTCAGGCCCAACGAAACAAACAGATGC
GAATCTATGTTTGGTGAACGATCTTTTGTGAAGTTTACTTTCATCGAGAT
GAAGTCACGTAACCAACTGTGAAACTTAGTAGGAACAGCTGGGTACGAAT
GTTTTCGGCGTCAGTTATGTACAAGCGTGTTCTCTGTTGCTTTTCGTTGA
ACCTTTGTGGGTGTCTTGTTTTTTGAAAGCATCACCACCACAGGCACCAG
ACCCGCCGGAAAATTCCGACACATCGAGTGCATCTGGTGCTCGCGGTGGG
GCGAAAAGGAAATCTGCTGAACAACCGGAGGACGAACAATCACGGCACTC
CAACGGGACAAGGAGGTCATCAAGATTGCCAGCGGCCAGGGAAACGAGCA
ACGGTGGGTTCCTGGCCTTTCCAGTTCAGCATGGGCGGGTAACTGCCAAC
TCAACCTCTACAGTATCGCCAGCGCCACCGCCTTCCGCTTTCTCTCTCCC
CCTCTCATGCGTGTGCTTTGGATGCAGTCTCCCAACATCAATTTTTAATC
ACGGAGGTCTCTGTGGCGAACATGTTACTGGTCTTGCCGATTCCTTCCTC
GCTTTGGTTGTGACCTACTCATCTCTCGCGCACACGCATCATGTCTACGC
ATGGAGTGGTCAGTGGCGAGTGCCTCACCACCCAGCACACTCGCGCCGTG
TGCTAGTTGGCTTAGTAGCCGGGCGATGAGCTCGCACTGCGAGGTGTGCA
GCGTTCCTGGCTTGCTCCGGCTTACCTATCCTGTTGTGTATGCAGCAGCA
CAGTGTGGCCCACTTGCACAGTTTTATTGGCAAGGTGAATGTCGCCGTGT
ACGCCGCAAGCACTCGTTTGGGCCTGAAAGATTGGCCATTAGGTGGACTT
GTGAGAGCTCTCAGCTGCTGTGTTGCCTCCTGTGCGGGTGCGGGGCAAAC
TCTCATTTTTTCAGCAGATGGGCGGAGCGCGGTCGATACGCAACAGCAGG
ATGCGACGACGGCAAAGAAGGAGGAGCCGGCGGTGAGCAAGAGCACGGGT
GATGGGGCCATCAAGCGGGCAACTGAATGTTGATCAATGAAAGCACAAAT
CTGCCAGGAATCTTTGATGTGTGTTCTGTTGTGGAAGCTGAGACTCTCCT
GACGAAAATTGAAAAGCGGCCTGGGAAGTAGTTTGGTTGTGGAACAAAGA
CATAGAGCAAAAGTAGGACAACTGTACTGCTGAACACCGGTACGAATTCA
AAGTCCAAAACCTTCGCCGTGCTCTCCTTCTATGTTTCCGCGTTTGTTTT
TGCCGTTCGGAAGCGTTCCCTTACAATAAAAGTTCGAGACCAAACTGGCG
AGGAAACGTGCTTCAAAGTGCGCTCCACCACTGCAATGAGCAAGATGATA
GACATGTACTGTAGCATGAAGGGAGTCTCGATGGCAGCAATGATGTTCCT
TCTAGACGGACACCGAGTAGGGTACGACGAGACTCCGGCTAGTCTCGAAC
TTGAAGATGAAGACCAAATCGACGCCAGGCTTATTCAGAGCGGGGGAAAG
CCCGTGATCCTCCTGTACCCGTCAGTCCCCCTGGATACCACCGTCACGCT
GGAGCTGAGCCCGCTCTGGAGATTCTCCGCTCTGTACCCGAAGCCCCCGT
CAAGCAAGTTGCAGCAGGCATCATCTTCGGAGGTGTGACTGCAATTATGA
TTTTTTTCCAATTCGGAACACCAAAGAGGTCCTGAGCTTGGACGTCCGTG
TGCACGACAAGCCTACGTGTACCTGGTTTCTCTATAGAGTTGGGTCTCCC
GTTAACCGGACTCCCTGGTGCCGAGTGTGTTTTGCCGATGCACGTCAAGC
ATTGCAGTTGACAGACATATTCTACTTCATTGATTGTAGAAACAGGCACA
CCCCTCTGCGTTTTACTCAATTCGGCCTGTCGGATATATCGATAATCACA
GCATTCTCCCCTATTCTGTTGGTCGCGTTGTGTTGTTGGTGTAGATGTAT
TGAACATTTTGATGGCCGGTTTTGGTGGGAAATAGTGTTTTGGGCTGGCG
GTCAAATGAGCGTTCCCGATTTTCCGTCCTTCGCCAATATTTCTTCAGAT
GTTTGGTTGGCGTGCCGAAAGTAGCACACCCTGTACGGCACGTCAACATA
GCCATGCATGCGTCCGTATTCGGTGGCTCTCCGTCATTACGTACATTCAG
GCCACCTTGGCTGGTGGCCAGCAGTGCAAATGGAACGTCCACGCCAGTCC
CGACGGGTCTCTTGAAGACCTCAGCACCGGCAGGGAGTATCCGTACCTCT
TCTGGGAAGCAGATTCTACCGACGGCCGAGTTTCCCGGAGCTTTGGGTTG
GACGTGACGAGGTCGTTTTGCGTGGCAGGCGACGCCGCAGGTACGATGCG
GTCCTGATCGGCTATAGGCATCCATCCCTGCATCAAGGTATTTTCAATGC
TTGTGCTTCCGATGTCCCCATACGCTGTGGCAACACACAACGTTCTCGTA
GCTCTTTATCCCATTGTTGACACTCGTCATCCCATTCCACTACTATTCTC
TACTGTTGCTTTCGTGATCCGCTTCCTTCGACAGGCGTGTTCCTCGACGG
TGCCCTGGAGCGCCTCGGGCTCAGCATGCGGGAGCGCTGCGATATGGTCA
CCTACTGGCTGCCGCAGCTGGAGTCATCCGCCTTCAACATCATCTACTTC
GTGGACGTAGAGCGGTACGAGAAGGCGGCCCATTTGACCATTGCGCCTGC
TCCGGATGTCATGATCCGCATCTTCATGGCCTTCAGGTGGGTCGTGAGTA
CCTGGGCACGTGCTATTTCGATTTTACCGGTGAATAATAGTGCTTGGTTG
AGCCTTGTTGTGCTCAAGATAAGGATCCATCTTTCATATTTTCAACATCA
TCGGTGGCCTCCTATTGGAACTGTAGATTCCTAGTGAGTGTACTTCAACC
CGTACCCTGAAAAATCACATGTCACAATCTTTCAATACTCCAATGAACGC
AGGTCATTCGCCGCCGTTTTCTATCCTCCAAAGCCTTGAACAAGTAGCAT
TATTTTCTCATCGTTCCTTTTCTCCTCTCCTCACGCAGTATGTGCACGCT
CTCGGTGAACGGTATTGCGATTGTAATTGCAGGGGCACCGATGCGTACGA
CGCCGAGCTGGACACCGCCAAGATGGAAGACCTACGAGCGCCTGCAAGGA
AGGGATTTGTGGCTGTCGAGTGGGGAGGCATGAACCTCAACGGGTCCTCG
CGCGACTAGGAGGTCAATTCACCTGCGAAATCTGCTGCCGATAGGTTCGA
GCACAGACAGCTTCCAGAGCAACCTGTAGGTAGGTCGTACATACATGTGG
TTTAGGGACGAAAATATCGCAGTCGAGGATGTTATGAAGTGCATAGAGGT
GACTGGGTTCATGGCCCTCCAGACACTAGCTGACCACGATGAAGTAGAAA
CCTGCCGTGTGTATGCCATGCTCGAGCGTGTTACCACAACGCTGGTAGAC
ACGCACGCCGAACCAACGCCGGGTCGACTGGTTCTGATCCACGGTGTTTA
GGCGCGGAATGGTTACGAATGGGTTTGACCTTGGCTTTGGGCGATCCACA
CCTCGCGTCGCTCAGCAGCATATGAAACCATACAAGCCATCTGGTAATAC
TTCGAGGTGATCGAGTTACGACGTCGTCTCGCCCTCACCGATGTCGCGGT
GGTCGTGCTTCCGGGCAGTGCGGCGCAGGTCAGCATCGTTCTCCGGCTGG
CGGCAGTGTTCCTGTTTGTCTCCGAGTCCTTGTCTCCGTTTCACGGCCGT
ATCGACATGGGTCTGTACCGGTGGGGGAACGGAGTCGTGCTCGGCAGCAT
GTACGTTGCCGTGCTTCTGGAGGTGGACGTGTCGCGTGAAGGCACGGATA
CGATGTCGGCGTCCGCCTGGGTTCTGATCGCTGCGAACGTATTCATGGTG
GTGGCATGAAGGCCCATTCGGCTCTCATGGTTCGAGAGTGACGGAGAGCG
AACGGATCAGACGATGAGTCTTGAAGGAGTCGCCAACTGAGTTGGCGAAC
CCGGAACCGAAGCTCTGTCTGGAACCACCTTCTTCGCTTTGAGCACAACG
CTGACGTTCGTGTTGTATAAGGCAGCATCCCTGGGCTACCTGTAAGACAA
ATATTTTGGCATCTGTCTTTGTCGCGAATGGTGATGATTGCGAAACTTCC
AAGTCCCCCGGTGGAAGTTGGAAGATGTACGAGATGGCTCCCCAATATTA
TCGTTGATAAACGGGGGCAAGCACCTGCCAGGCAAAACAAACGCCCGCAA
GACTCACCAGAGAGACAGTCCTCACAAGGGGATACGGGCAAACGTCAAGA
ACTCACGGCTTCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1688:4312..9076-

>mRNA_E-siliculosus-1a_F_contig1688.3852.1 ID=mRNA_E-siliculosus-1a_F_contig1688.3852.1|Name=mRNA_E-siliculosus-1a_F_contig1688.3852.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2502bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1688:4312..9076- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGAGTCTAAGGATCCTGCAGAAGAAAGGAGAGCTTCTTCAAGAGGA
AAAGCTTATTCTACTACGCCGTCAAGAGGCTTTGCCGATCGGCATAAGGA
AGAGAGCGCCCGTAGCTGCTGATGACGAGTCTAAGGATCCTGCAGAAGAA
AGGAGAGCTTCTTCAAGAGGAAAAGCTTATTCTACTACGCCGTCAAGAGG
CTTTGCCGATCGGCATAAGGAAGAGAGCGCCCGTAGCTGCTGCATCACCA
CCACAGGCACCAGACCCGCCGGAAAATTCCGACACATCGAGTGCATCTGG
TGCTCGCGGTGGGGCGAAAAGGAAATCTGCTGAACAACCGGAGGACGAAC
AATCACGGCACTCCAACGGGACAAGGAGGTCATCAAGATTGCCAGCGGCC
AGGGAAACGAGCAACGCATCACCACCACAGGCACCAGACCCGCCGGAAAA
TTCCGACACATCGAGTGCATCTGGTGCTCGCGGTGGGGCGAAAAGGAAAT
CTGCTGAACAACCGGAGGACGAACAATCACGGCACTCCAACGGGACAAGG
AGGTCATCAAGATTGCCAGCGGCCAGGGAAACGAGCAACGCAGATGGGCG
GAGCGCGGTCGATACGCAACAGCAGGATGCGACGACGGCAAAGAAGGAGG
AGCCGGCGCAGATGGGCGGAGCGCGGTCGATACGCAACAGCAGGATGCGA
CGACGGCAAAGAAGGAGGAGCCGGCGCGTTCCCTTACAATAAAAGTTCGA
GACCAAACTGGCGAGGAAACGTGCTTCAAAGTGCGCTCCACCACTGCAAT
GAGCAAGATGATAGACATGTACTGTAGCATGAAGGGAGTCTCGATGGCAG
CAATGATGTTCCTTCTAGACGGACACCGAGTAGGGTACGACGAGACTCCG
GCTAGTCTCGAACTTGAAGATGAAGACCAAATCGACGCCAGGCTTATTCA
GAGCGGGGGAAAGCCCGTGATCCTCCTGTACCCGTCAGTCCCCCTGGATA
CCACCGTCACGCTGGAGCTGAGCCCGCTCTGGAGATTCTCCGCTCTGTAC
CCGAAGCCCCCGTCAAGCAAGTTGCAGCAGGCATCATCTTCGGAGCGTTC
CCTTACAATAAAAGTTCGAGACCAAACTGGCGAGGAAACGTGCTTCAAAG
TGCGCTCCACCACTGCAATGAGCAAGATGATAGACATGTACTGTAGCATG
AAGGGAGTCTCGATGGCAGCAATGATGTTCCTTCTAGACGGACACCGAGT
AGGGTACGACGAGACTCCGGCTAGTCTCGAACTTGAAGATGAAGACCAAA
TCGACGCCAGGCTTATTCAGAGCGGGGGAAAGCCCGTGATCCTCCTGTAC
CCGTCAGTCCCCCTGGATACCACCGTCACGCTGGAGCTGAGCCCGCTCTG
GAGATTCTCCGCTCTGTACCCGAAGCCCCCGTCAAGCAAGTTGCAGCAGG
CATCATCTTCGGAGGCCACCTTGGCTGGTGGCCAGCAGTGCAAATGGAAC
GTCCACGCCAGTCCCGACGGGTCTCTTGAAGACCTCAGCACCGGCAGGGA
GTATCCGTACCTCTTCTGGGAAGCAGATTCTACCGACGGCCGAGTTTCCC
GGAGCTTTGGGTTGGACGTGACGAGGTCGTTTTGCGTGGCAGGCGACGCC
GCAGGCCACCTTGGCTGGTGGCCAGCAGTGCAAATGGAACGTCCACGCCA
GTCCCGACGGGTCTCTTGAAGACCTCAGCACCGGCAGGGAGTATCCGTAC
CTCTTCTGGGAAGCAGATTCTACCGACGGCCGAGTTTCCCGGAGCTTTGG
GTTGGACGTGACGAGGTCGTTTTGCGTGGCAGGCGACGCCGCAGGCGTGT
TCCTCGACGGTGCCCTGGAGCGCCTCGGGCTCAGCATGCGGGAGCGCTGC
GATATGGTCACCTACTGGCTGCCGCAGCTGGAGTCATCCGCCTTCAACAT
CATCTACTTCGTGGACGTAGAGCGGTACGAGAAGGCGGCCCATTTGACCA
TTGCGCCTGCTCCGGATGTCATGATCCGCATCTTCATGGCCTTCAGGCGT
GTTCCTCGACGGTGCCCTGGAGCGCCTCGGGCTCAGCATGCGGGAGCGCT
GCGATATGGTCACCTACTGGCTGCCGCAGCTGGAGTCATCCGCCTTCAAC
ATCATCTACTTCGTGGACGTAGAGCGGTACGAGAAGGCGGCCCATTTGAC
CATTGCGCCTGCTCCGGATGTCATGATCCGCATCTTCATGGCCTTCAGGG
GCACCGATGCGTACGACGCCGAGCTGGACACCGCCAAGATGGAAGACCTA
CGAGCGCCTGCAAGGAAGGGATTTGTGGCTGTCGAGTGGGGAGGCATGAA
CCTCAACGGGTCCTCGCGCGACTAGGGGCACCGATGCGTACGACGCCGAG
CTGGACACCGCCAAGATGGAAGACCTACGAGCGCCTGCAAGGAAGGGATT
TGTGGCTGTCGAGTGGGGAGGCATGAACCTCAACGGGTCCTCGCGCGACT
AG
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