mRNA_E-siliculosus-1a_F_contig1680.3818.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1680.3818.1
Unique NamemRNA_E-siliculosus-1a_F_contig1680.3818.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A6H5JZI5_9PHAE (ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZI5_9PHAE)

HSP 1 Score: 447 bits (1150), Expect = 1.800e-153
Identity = 239/246 (97.15%), Postives = 244/246 (99.19%), Query Frame = 1 
Query:    1 MASLASFSRMGARVASAAARTAPRTAKQAVQASAARSFSVASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            MASLASFSRMGARVASAAARTAPRTAKQAVQASAARSFSVASQVIELSSYLEKRIASTATDA+KAVSEYNE+GKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTG+IVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYC ++ VG
Sbjct:    1 MASLASFSRMGARVASAAARTAPRTAKQAVQASAARSFSVASQVIELSSYLEKRIASTATDANKAVSEYNEIGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGAIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCVYVGVG 246
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BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A836CH44_9STRA (ATP synthase subunit alpha n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH44_9STRA)

HSP 1 Score: 334 bits (856), Expect = 4.980e-109
Identity = 171/207 (82.61%), Postives = 187/207 (90.34%), Query Frame = 1 
Query:  118 VASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            ++S  IELSSYLEKRI+  A     A +EYNEVGKV++VGDGIARVYGLNNVQAGEM++F CGLRGMALNLEESNVGVVIFGDDREILEG TVKRTG+IVDVPVGPE LGRV+DGLG PIDGAGP+ +K RSR EVKAPGIIPRKSVHEP+QTGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTKGDDLLYC ++ VG
Sbjct:   38 MSSTTIELSSYLEKRISGAAATKTSA-AEYNEVGKVISVGDGIARVYGLNNVQAGEMIVFACGLRGMALNLEESNVGVVIFGDDREILEGDTVKRTGAIVDVPVGPELLGRVVDGLGEPIDGAGPINSKLRSRCEVKAPGIIPRKSVHEPMQTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKGDDLLYCIYVGVG 243
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BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A6V2WS15_HETAK (ATP synthase subunit alpha n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WS15_HETAK)

HSP 1 Score: 330 bits (847), Expect = 1.010e-107
Identity = 174/212 (82.08%), Postives = 187/212 (88.21%), Query Frame = 1 
Query:  103 ARSFSVASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            AR+FS  S VIELS YLEK+I+ T   A  A SEY EVGKV++VGDGIARVYGLNNVQAGEMV+F  GLRGMALNLEESNVGVVIFGDDREILEG  VKRTG+IVDVPVGPE LGRV+DGLG PIDG GPL T+ RSRAE KAPGIIPR+SV+EPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAI IDTIINQKTKGDDLLYC ++ VG
Sbjct:   33 ARAFSSVSPVIELSDYLEKKISETKATAQSA-SEYAEVGKVISVGDGIARVYGLNNVQAGEMVVFSAGLRGMALNLEESNVGVVIFGDDREILEGDVVKRTGAIVDVPVGPELLGRVVDGLGEPIDGMGPLNTEIRSRAEAKAPGIIPRQSVNEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAIAIDTIINQKTKGDDLLYCIYVGVG 243
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A8J2SM38_9STRA (ATP synthase subunit alpha n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM38_9STRA)

HSP 1 Score: 307 bits (786), Expect = 1.020e-98
Identity = 168/224 (75.00%), Postives = 183/224 (81.70%), Query Frame = 1 
Query:   67 PRTAKQAVQASAARSFSVASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            PR A+ A+QA A       S V+ELSSYLEKRI   A   D     +NE+G V++VGDGIARVYGLN+VQAGEMV F CGLRGMALNLEES+VGVVIFGDDREILEG  VKRTG+IVDVPVG   LGRV+DGLG PIDGAGPL   TR RAEVKAPGIIPR+SV EPVQTGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTKGDD L C ++ VG
Sbjct:   10 PRLAR-ALQAPARSHARAMSSVVELSSYLEKRIGDVAGSGDALA--FNEMGNVISVGDGIARVYGLNSVQAGEMVEFACGLRGMALNLEESSVGVVIFGDDREILEGDAVKRTGAIVDVPVGEGLLGRVVDGLGEPIDGAGPLKDVTRGRAEVKAPGIIPRQSVSEPVQTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKGDDALMCIYVGVG 230
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BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A7S2BTT7_9STRA (ATP synthase subunit alpha n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BTT7_9STRA)

HSP 1 Score: 306 bits (783), Expect = 5.850e-98
Identity = 165/212 (77.83%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:  103 ARSFSVASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            AR+FS ASQVIELS+YLE+RIAST+  A  +  +Y E GKV++VGDGIARVYGL NVQAGEMV+F  GLRGMALNLEESNVGVVIFGDDR+ILEG  VKRTGSIVDV VG   LGRV+DGLG PIDG GP+    RSRAEVKAPGIIPR+SV EPVQTGLK+VDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTKGDD L C ++ VG
Sbjct:   48 ARNFSAASQVIELSNYLEERIASTS--AAVSSQDYAETGKVISVGDGIARVYGLANVQAGEMVMFSAGLRGMALNLEESNVGVVIFGDDRDILEGDQVKRTGSIVDVNVGEGLLGRVVDGLGEPIDGNGPIKGGHRSRAEVKAPGIIPRQSVSEPVQTGLKSVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKGDDALMCIYVGVG 257
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BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A7S2W4M6_9STRA (ATP synthase subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4M6_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.110e-96
Identity = 171/230 (74.35%), Postives = 192/230 (83.48%), Query Frame = 1 
Query:   52 AARTAPRTAKQAVQASAARSFSVASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIF-DCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            AAR AP  A QA    ++R+FS   QVIELS+YLE RI+ST  +A    +EY EVGKV++VGDGIARVYGL NVQAGEMV+F +  LRGMALNLEESNVGVVIFGDDREILEG  V+RTG+IVDV VG E LGRV+DGLG PIDGAGP+   +RSRAEVKAPGIIPR+SV EPVQTGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQ+TKGDD L C ++ VG
Sbjct:   17 AARAAPVLAAQA----SSRNFSTVQQVIELSNYLESRISSTGAEA---AAEYAEVGKVISVGDGIARVYGLANVQAGEMVVFSNSQLRGMALNLEESNVGVVIFGDDREILEGDQVERTGTIVDVNVGTEMLGRVVDGLGEPIDGAGPVNA-SRSRAEVKAPGIIPRQSVSEPVQTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQRTKGDDALKCIYVGVG 238
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BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A7S0LVX2_9EUKA (ATP synthase subunit alpha (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LVX2_9EUKA)

HSP 1 Score: 297 bits (760), Expect = 1.720e-96
Identity = 155/204 (75.98%), Postives = 176/204 (86.27%), Query Frame = 1 
Query:  130 VIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGD-DLLYCGWLEVG 738
            VIELS+YLE+RI+  + +   + + ++EVGKVV+VGDGIARVYGLN VQAGEMV+F  GLRGMALNLE+SNVGVVIFGDDR ILEG TVKRTG+IVDVPVGPE LGRV+DGLG  IDG G + +K RSRAEVKAPGIIPRKSVHEP+ TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTK + D L C ++ VG
Sbjct:   11 VIELSNYLEQRISQKSAEYAASAASFDEVGKVVSVGDGIARVYGLNKVQAGEMVVFASGLRGMALNLEDSNVGVVIFGDDRSILEGDTVKRTGAIVDVPVGPELLGRVVDGLGEAIDGKGAIVSKLRSRAEVKAPGIIPRKSVHEPMPTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKSEKDKLMCIYVGVG 214
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A6U4D8B6_9STRA (ATP synthase subunit alpha n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D8B6_9STRA)

HSP 1 Score: 300 bits (767), Expect = 8.100e-96
Identity = 164/207 (79.23%), Postives = 176/207 (85.02%), Query Frame = 1 
Query:  121 ASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKT-RSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            AS V+ELS YLEK+IAS   D D A   +NEVGKV++VGDGIARVYGLN+VQAGEMV+F CGLRGMALNLEESNVGVVIFGDDR ILEG  V+RTG+IVDVPVG E LGRV DGLG PIDG G     T RSRAEVKAPGIIPRKSVHEPV TGLKAVDALIPIGRGQRELVIGDRQTGKTAI IDTIINQKTK DD L+C ++ VG
Sbjct:   33 ASSVVELSDYLEKKIASAGAD-DAAT--FNEVGKVISVGDGIARVYGLNDVQAGEMVVFSCGLRGMALNLEESNVGVVIFGDDRAILEGDAVERTGAIVDVPVGKELLGRVTDGLGQPIDGKGDFPASTARSRAEVKAPGIIPRKSVHEPVPTGLKAVDALIPIGRGQRELVIGDRQTGKTAIAIDTIINQKTK-DDPLFCIYVGVG 235
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: A0A7S2K5H7_9STRA (ATP synthase subunit alpha n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5H7_9STRA)

HSP 1 Score: 295 bits (756), Expect = 4.150e-94
Identity = 160/221 (72.40%), Postives = 179/221 (81.00%), Query Frame = 1 
Query:   76 AKQAVQASAARSFSVASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            AK A  A    + S ASQ +ELS+YLE +I+  A   D + S+Y E G V++VGDGIARVYGL+NVQAGEMV+F CGLRGMALNLEE NVGVVIFGDDR+ILEG TVKRTG+IVDVPVGPE LGRV+DG+G PIDG   L    RSRAEVKAPGIIPR+SV EP+ TGLKAVDALIPIGRGQRELVIGDRQTGKTAI IDTIINQKTK D L  C ++ VG
Sbjct:   20 AKAAGSAFQTSTRSFASQTLELSTYLESKISQVAGATDDSASKYAETGAVISVGDGIARVYGLSNVQAGEMVVFACGLRGMALNLEEDNVGVVIFGDDRDILEGDTVKRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDKCARSRAEVKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELVIGDRQTGKTAIAIDTIINQKTKADPL-SCIYVGVG 239
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Match: B8C6C6_THAPS (ATP synthase subunit alpha n=10 Tax=Bacillariophyta TaxID=2836 RepID=B8C6C6_THAPS)

HSP 1 Score: 291 bits (745), Expect = 1.810e-92
Identity = 162/233 (69.53%), Postives = 186/233 (79.83%), Query Frame = 1 
Query:   40 VASAAARTAPRTAKQAVQASAARSFSVASQVIELSSYLEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFDCGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGRVLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVG 738
            +A  AA  AP+ A+     ++ RS   ASQ +EL++YLE +I++ A   D AV +Y E G V++VGDGIARVYGL NVQAGEMV+F CGLRGMALNLEE NVGVVIFGDDR+ILEG TVKRTG+IVDVPVGPE LGRV+DG+G PIDG   L    RSRAEVKAPGIIPR+SV EP+ TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTK D L  C ++ VG
Sbjct:   10 IAKRAALAAPQVARSTALLTSTRSM--ASQTLELTAYLESKISAAAGSEDSAV-KYAETGSVISVGDGIARVYGLANVQAGEMVVFACGLRGMALNLEEDNVGVVIFGDDRDILEGDTVKRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNCKRSRAEVKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKKDPLA-CIYVGVG 238
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1680.3818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZI5_9PHAE1.800e-15397.15ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxI... [more]
A0A836CH44_9STRA4.980e-10982.61ATP synthase subunit alpha n=2 Tax=Tribonema minus... [more]
A0A6V2WS15_HETAK1.010e-10782.08ATP synthase subunit alpha n=1 Tax=Heterosigma aka... [more]
A0A8J2SM38_9STRA1.020e-9875.00ATP synthase subunit alpha n=1 Tax=Pelagomonas cal... [more]
A0A7S2BTT7_9STRA5.850e-9877.83ATP synthase subunit alpha n=1 Tax=Dictyocha specu... [more]
A0A7S2W4M6_9STRA1.110e-9674.35ATP synthase subunit alpha n=1 Tax=Rhizochromulina... [more]
A0A7S0LVX2_9EUKA1.720e-9675.98ATP synthase subunit alpha (Fragment) n=1 Tax=Cocc... [more]
A0A6U4D8B6_9STRA8.100e-9679.23ATP synthase subunit alpha n=1 Tax=Phaeomonas parv... [more]
A0A7S2K5H7_9STRA4.150e-9472.40ATP synthase subunit alpha n=1 Tax=Leptocylindrus ... [more]
B8C6C6_THAPS1.810e-9269.53ATP synthase subunit alpha n=10 Tax=Bacillariophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1680contigE-siliculosus-1a_F_contig1680:407..5771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size759
Model size759
Exons7
Ec32 orthologEc-17_002590.1
Ec32 ortholog descriptionATP synthase subunit alpha-like domain
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko00002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0056@1,KOG1353@2759
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
KEGG ModuleM00158
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG TC3.A.2.1
KEGG koko:K02132
Preferred nameatp1
Seed eggNOG ortholog2880.D8LJM3
Seed ortholog evalue8.7e-131
Seed ortholog score473.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928181.9001777-CDS-E-siliculosus-1a_F_contig1680:406..4451622928181.9001777-CDS-E-siliculosus-1a_F_contig1680:406..445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 407..445 -
1696318837.2917902-CDS-E-siliculosus-1a_F_contig1680:406..4451696318837.2917902-CDS-E-siliculosus-1a_F_contig1680:406..445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 407..445 -
1622928181.9168391-CDS-E-siliculosus-1a_F_contig1680:658..8051622928181.9168391-CDS-E-siliculosus-1a_F_contig1680:658..805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 659..805 -
1696318837.3017032-CDS-E-siliculosus-1a_F_contig1680:658..8051696318837.3017032-CDS-E-siliculosus-1a_F_contig1680:658..805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 659..805 -
1622928181.9332256-CDS-E-siliculosus-1a_F_contig1680:1352..14211622928181.9332256-CDS-E-siliculosus-1a_F_contig1680:1352..1421Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 1353..1421 -
1696318837.3092542-CDS-E-siliculosus-1a_F_contig1680:1352..14211696318837.3092542-CDS-E-siliculosus-1a_F_contig1680:1352..1421Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 1353..1421 -
1622928181.9483244-CDS-E-siliculosus-1a_F_contig1680:1962..21811622928181.9483244-CDS-E-siliculosus-1a_F_contig1680:1962..2181Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 1963..2181 -
1696318837.3170943-CDS-E-siliculosus-1a_F_contig1680:1962..21811696318837.3170943-CDS-E-siliculosus-1a_F_contig1680:1962..2181Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 1963..2181 -
1622928181.9688673-CDS-E-siliculosus-1a_F_contig1680:2606..27621622928181.9688673-CDS-E-siliculosus-1a_F_contig1680:2606..2762Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 2607..2762 -
1696318837.3247738-CDS-E-siliculosus-1a_F_contig1680:2606..27621696318837.3247738-CDS-E-siliculosus-1a_F_contig1680:2606..2762Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 2607..2762 -
1622928181.9836237-CDS-E-siliculosus-1a_F_contig1680:4152..41971622928181.9836237-CDS-E-siliculosus-1a_F_contig1680:4152..4197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 4153..4197 -
1696318837.33213-CDS-E-siliculosus-1a_F_contig1680:4152..41971696318837.33213-CDS-E-siliculosus-1a_F_contig1680:4152..4197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 4153..4197 -
1622928181.9981477-CDS-E-siliculosus-1a_F_contig1680:5687..57711622928181.9981477-CDS-E-siliculosus-1a_F_contig1680:5687..5771Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 5688..5771 -
1696318837.3396144-CDS-E-siliculosus-1a_F_contig1680:5687..57711696318837.3396144-CDS-E-siliculosus-1a_F_contig1680:5687..5771Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1680 5688..5771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1680.3818.1prot_E-siliculosus-1a_F_contig1680.3818.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1680 407..5771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1680.3818.1

>prot_E-siliculosus-1a_F_contig1680.3818.1 ID=prot_E-siliculosus-1a_F_contig1680.3818.1|Name=mRNA_E-siliculosus-1a_F_contig1680.3818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=253bp
MASLASFSRMGARVASAAARTAPRTAKQAVQASAARSFSVASQVIELSSY
LEKRIASTATDADKAVSEYNEVGKVVTVGDGIARVYGLNNVQAGEMVIFD
CGLRGMALNLEESNVGVVIFGDDREILEGGTVKRTGSIVDVPVGPECLGR
VLDGLGVPIDGAGPLTTKTRSRAEVKAPGIIPRKSVHEPVQTGLKAVDAL
IPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCGWLEVGGLSA
VAT
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mRNA from alignment at E-siliculosus-1a_F_contig1680:407..5771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1680.3818.1 ID=mRNA_E-siliculosus-1a_F_contig1680.3818.1|Name=mRNA_E-siliculosus-1a_F_contig1680.3818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5365bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1680:407..5771- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCGCTCGCTTCTTTCTCCAGGATGGGGGCACGGGTGGCGTCCGC
CGCTGCCCGCACTGCGCCCCGCACGGCGAAGCAGGTGCGATTTTGACTGC
CTGCTGTGCAAAGCTTGCTTGTGTTCGCCTTTTCCGTCCAAAGAACGGAT
GTCGTCTCGTACACACACACTAACGGCGGTGGGGTGGGTAGGTGGGTTCG
ATTTTTTTCTCAGGTGCAACCGCGTGGGGCACACGCGTCCCTGGTGTGCG
GCAGCAGGCATGGCGTTGTTGCTGCCCAACGCACCGGCAATGCTCCACGC
GCCGGCTGTCTTGTGTGCACTCTGTGCCGCATCTTGCACTCGCCGAGTCT
GGTTGCAACCGATGTTCCTTCTCTCTCTAAAGCGCACCACACACGATGAG
AGGGGGGGTCGAAGGGGGGTGTTATGGGGGAAGGCAGGGCACACCGCGGT
ACCGGCCACTGGATCGAGAACAGCTCGCAGCTTCCTGTTGTGTTGTGTTG
CCTCATCCACGGGTCGCTCCATCTGTCGCGGTGTTGCAATCGCTTGTGCA
CTCCGGAAGACCTGCGGCACCGGTGGGGTTGTGTGTGTGTGGTCGGCGTC
ATATCCGGCAAAACGCGTTTTGCGGCACGGAGAGAGAGGGGAAGCCGTAG
GGTTTGTTCGGGCCCGCAGGCGCGGCCCACTAGCGAGTGAATACCGAAGC
TACATTGGCGCTACCACATCATGTGCTTTGCCCTGCTAGTTACCTTACCG
ATTTCCCCGAGATCGTGGTGTGAGCCTTCTATGTTCGTCGTGTGGACGGA
TAAAAAAGCAGAGAGAGCTGTTCTCGCAAAAATCGCAACCCGCCCCGCTG
GTTTGCCAGGCGCGGTGCTGAGCCACTTGTTGTTCGCTTTAGAGTGCACA
ACACGAGCGCTGCTGCCCTGAAACTGCAGCACCTTTGCAGGGGGGGGCAC
GCACACTCAGACACCGAATTGACAAAGCTTTTGTCCGCGATGTGCATCCT
CAATTTGTGTGTTGTGTGTTCGACATGTATTGCACACCATATACTCCGGA
GGCGCAGACTAAGCATACCATCTGCTGTGCAAGAACAACAAGGGAGTTTT
TGGGGCGTGCTGCTTCCCGACCAAAAAAGCAAATGTCATGCACTGCTTCC
TGTGTTCCTGTGCTTGCTGCCGAAGCCCCCAGCGTGCACAATCATTTTGT
TGGGTCTGCCTCCAGCGCGTGATTCATGCACCCCACGCACCAGTATCCTA
TCAGCATCACACCACTGAGAGTTGCACTGCTTAGTTAGGCACTACTGCTG
CTGTAGAATCTATTATGCAAGAAACATCTTCTCGGCCCACATGCCTCCCC
CCTGGCCCTGATGTTGGCACTTCTTATATTAATATTATAGTGTGCTATCC
CAAGCGGGTGAAAAATATTCCTTATTTGAGGGCCACTCTCTCGCTCTTGC
CACCCCTTTCTCTCTTCTTCTCCGTCCGTCTCTTTGCCCTCCCCATTGCT
CCTTGTGCCTGATCCCTGGTACAACAAGTAACATTTGTTTTGTTCCTGCT
GCTGCTGCTGCTGTGTACGCGCAGGCTGTGCAGGCGAGCGCCGCGCGAAG
CTTCTCCGTGGCTAGCCAGGTGGGTGAAGGACACAGCACGGCAGGGGCAG
TACCCTATCGGGTGAAGGCTGTCAGTGCTTCGGCTGTCTCTTTGAATGGG
CGGAGCCATGACCTCAAGCAACGTAGTACGTCGACGGTGTGGTTGTTGTG
TAGGTGAAGACTACGGAGTACGCGGCATAGTTAAAAAATGTTTGGTGTTT
TGTGCGTGCGGTGCACAGCAGTGTGCACACCTTGCTCTATACCCTCGACG
ATGTGTGCACGGCGTCTGGCCTCTTACAACTTTTGTTCTTGTGCATGACG
TTGTAGGATATTGCCGAGGGCCGAATTGGGACAATGTTGTGGTCTTGGGG
ACTCATGTCTCTGCTTTCCTTGGTAGTCCTTGTTTGGTGCAGATTGATTC
CTAGGAGTTCGACTTTTTGTTTGAGGCGTTAACCAGCATTGTCTGTTGAC
TCTCTTGACCAGAGTTGCCCGCGAGTTAGAGCGCTGGCATTCCCTCCTGT
TACCCCAACTGTTCATGTGCGGTTATATGTAGAGGTCCGCCCGTTCCTTT
GGGTCGAGGTAGTTGGACCCAGCACGTTTCTCGTAGTTGTGCTTGGTAAC
TAGTTCCGATTGGAATTGGAATTTGTTCCAATCGCAAATACGACAAGCGT
GCTGGTTTCACCCACCACGATCCAAAGGAACGAACGAACCTGTGCATACA
GCCGCACAATACACACTGGGGTGAGGAAGGGAATTTCAACGCTCTCCCTA
TTTCCTGGAGCTGTGGAGAGTCAAGGACGGCAAAGTTGGCCAGCCTCGAT
TGCTCCATAGCTGCAGAACAGGGTATGCATAGGGATTTAATTTTTGGAAG
GCACTGCTGTTAGGCGAATGGCACTGGTAATGTCAACGTGCTGCAGTTGT
CGAGATGCTGCGACCTGCTATAGTCACCATTTTACCCAACACAGGGTGTG
ACAGCGTTGGCGTTTGCAAGATTCGCGGTGTCTTGTGTCCTACACCTTTA
TTTGATAATTGGAGCCATGACTTGACGTCAACAAGGTCCTGTTTCTGATA
GATTGCATCGTTCGGAATACACGGAAGATCGGAGCTCACGGCTGCCGGTA
CACACGGCCCTATCCTCAGCACCTATCCTTTCGAACTACGAAGGAGCCGG
TATTCAGGGGCGAATGGTATCTGTTGACGCTCCTCTTTCGTGCTCGTCAC
ACCCCTGAACACGCCTCCTTGGGAAACCCGTTCACCTGCCATCATGTCTT
CCGTGCCCGTCACACCAAAACACGCCTTATGTTGTGAAGTGAAATCCCTT
CACCGGTCACACTCAACCCCCCCCCCCCCCTGCTGCGAAACCCCTTCGTT
CTTCACACCCACATCGCCCCTCCTGTTATGAAACCCCCGTACGTACCACC
TATTTATAGGTGATCGAGCTGTCGAGCTACCTCGAGAAGCGCATCGCCAG
CACGGCGACGGACGCCGACAAGGCGGTGTCCGAGTACAACGAGGTCGGCA
AGGTCGTGACCGTCGGCGACGGTATCGCGCGCGTTTACGGGCTCAACAAC
GTGCAGGCCGGGGAGGTGTGTCTGTGTGTGTGTGTGTGTTGCGTCTGCCG
TTGCAGTGTGAGAGTTGGGGTTTGGTGCTGATGTGGATGATGTCGTGCCC
CTACGTTTTCGCTCCTGTTGCGTGATACCATAGCTTGAAACCAAGCACGG
CAAGAGGAAAGGTGAAGAGCTGTGTTGACCATTACTCTTGTGTGATGACC
CCCGGTATTTCTCAGGTGCCATGTGCTTCTCTTGTCTTACGCTATGTATG
CTGTACCCCGCTGTCAACAACTTTTGTGAATTTTTTGTTTGTACTCTCTA
TCGCGAAAATTACATCTGAAGATGGTTCATGTTCTTTTGTGTATTTCTCT
GGTACCATGTGTTTGCATTTTTCTAACGCTATGCACACGTCCTCGTCCGC
CTTCTTGTGGATTGTTGCTGTTTCCTATACTCTCGAATAGATGGTCATCT
TCGACTGCGGGCTTCGGGGCATGGCCCTCAACCTCGAGGAGAGCAACGTG
GGTGTCGTAATCTTCGGTGACGACAGGGAGATCCTCGAGGGAGGCACCGT
CAAGCGCACCGGGTCCATCGTGGACGTGCCCGTGGGGCCCGAGTGCCTCG
GCAGAGTACTCGACGGCCTCGGGGTGCCCATCGACGGCGCGGGGCCCCTC
ACCACCAAGGTGATTTTTTTTTTTTTTGTTGAATGTTTGAATTTTTGCTG
TTTGGTCTGTTTTTGTGGAACACACTGGCGTAGTGCTGTAGCGAGGTAGG
ATTCTCCTGCTCTCTCGTAGTTTTGCGGTTTTGAAATTTTTGGGGGCAAT
CGTCGTGCTGACGTTCTCTTTCTGTGGAAAGGCACCACAGAGAGAGATGA
ACGTTTGTGTCGTGCCATGGGCATCTATCTCCTGTTGGTGATGTGTCCCT
GAGACCGGACAGGGTCCGCTCGCAACATGACAGCGGTACTTACGTCGTGG
GGAAGCGATCATGTTGGCGGGTGCCCCCACCGTGACGGGGCCCCATAAGC
TGGCCACGAGACCAGAATCTCGCCTCGGTTTTTGCTCGCGCTGATCGAGC
AAGTGGGTAACTCAGCTGACTCTCAGTGCCCACCGCGGACGCTATGTAGA
ACCGCCAAGCAGCGCACCATTTGTGGTATGCACGGAAGCGCAACCGCTCA
CTTGTTAGCGTCTTGATCGTCGTCGTCGTTTCCTGCTTTGCGGTTGGCAG
ACGCGCTCGCGTGCGGAAGTGAAGGCCCCCGGCATCATCCCCCGCAAGTC
CGTGCACGAGCCCGTGCAGGTATGTGGTGGAAGTATGTGCGTGGCTGTTG
GCGATATTCTCGTGACGGTTTCAAAAGTTATGCCAACAACCTCTCATTTT
TTTGTGTTGCTGTTCACGGTTGACGGAGATGTTTTTTTTTGTTTGTTTCG
AAAACATGACGAATTCCCCTCCCCTCTCTCACGCGGAGCCCCCCCAAACG
CTTCCGAACTTCCTGCGGAAGATGTATTGCACCAGCAGACAGTGGAAAAC
CGCATGCCCCGAGTTGTCCTCGTCATGGAAAAGCAAGAGAATTTGTTTTT
CGATGGGAGTTCGCGGTGGCGTAGTGACGAACTAAACGGGGTCCCCGAGG
GGCAACCCGCGACGGCCCCACACCCCCACCTGTGTTCGCTCGTTTTTCGC
TGCGTAGTGACAAAACGCGGTCCGACGAAAGTCAACGCCTCCCACCGCCA
CCATTTTATTAACGCTGCTTAGTGACCGAACGAAGTCCGGCAAGAGTTAA
CCTCTGCCCGCACCTTTTTTTGACGCCGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCACAGACTGGCCTGAAGGCCGTGGACGCCCTGATCCCGA
TCGGGCGCGGGCAGCGTGAGCTGGTGATCGGTGACCGACAGACGGGAAAG
ACGGCCATCTGCATCGACACGATCATCAACCAGAAGACCAAGGGCGACGA
CTTGCTCTACTGCGTGTGAGTGAGCGTCGTGTCATCTGTAGGTGTAGATG
GCGACGTTGCTACCGCGGATGTGACGATGCATGTGATCGGTGTCTTGTGG
CGAGCGAGAGTGTTGCACCAGGGCAGTTTTGTGCTCGACGGGAGGGGAGA
GGCCGGTTACGCAACAGCGGTTGGTGCAAGGAGGGAGCTCGTTCGATTTT
TCCGCTCGCCTGATGGATAGTTCGAGGGGTGGCTTGAGGTGGGGGGTCTG
TCCGCTGTTGCGACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1680:407..5771-

>mRNA_E-siliculosus-1a_F_contig1680.3818.1 ID=mRNA_E-siliculosus-1a_F_contig1680.3818.1|Name=mRNA_E-siliculosus-1a_F_contig1680.3818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1680:407..5771- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCGCTCGCTTCTTTCTCCAGGATGGGGGCACGGGTGGCGTCCGC
CGCTGCCCGCACTGCGCCCCGCACGGCGAAGCAGATGGCTTCGCTCGCTT
CTTTCTCCAGGATGGGGGCACGGGTGGCGTCCGCCGCTGCCCGCACTGCG
CCCCGCACGGCGAAGCAGGCTGTGCAGGCGAGCGCCGCGCGAAGCTTCTC
CGTGGCTAGCCAGGCTGTGCAGGCGAGCGCCGCGCGAAGCTTCTCCGTGG
CTAGCCAGGTGATCGAGCTGTCGAGCTACCTCGAGAAGCGCATCGCCAGC
ACGGCGACGGACGCCGACAAGGCGGTGTCCGAGTACAACGAGGTCGGCAA
GGTCGTGACCGTCGGCGACGGTATCGCGCGCGTTTACGGGCTCAACAACG
TGCAGGCCGGGGAGGTGATCGAGCTGTCGAGCTACCTCGAGAAGCGCATC
GCCAGCACGGCGACGGACGCCGACAAGGCGGTGTCCGAGTACAACGAGGT
CGGCAAGGTCGTGACCGTCGGCGACGGTATCGCGCGCGTTTACGGGCTCA
ACAACGTGCAGGCCGGGGAGATGGTCATCTTCGACTGCGGGCTTCGGGGC
ATGGCCCTCAACCTCGAGGAGAGCAACGTGGGTGTCGTAATCTTCGGTGA
CGACAGGGAGATCCTCGAGGGAGGCACCGTCAAGCGCACCGGGTCCATCG
TGGACGTGCCCGTGGGGCCCGAGTGCCTCGGCAGAGTACTCGACGGCCTC
GGGGTGCCCATCGACGGCGCGGGGCCCCTCACCACCAAGATGGTCATCTT
CGACTGCGGGCTTCGGGGCATGGCCCTCAACCTCGAGGAGAGCAACGTGG
GTGTCGTAATCTTCGGTGACGACAGGGAGATCCTCGAGGGAGGCACCGTC
AAGCGCACCGGGTCCATCGTGGACGTGCCCGTGGGGCCCGAGTGCCTCGG
CAGAGTACTCGACGGCCTCGGGGTGCCCATCGACGGCGCGGGGCCCCTCA
CCACCAAGACGCGCTCGCGTGCGGAAGTGAAGGCCCCCGGCATCATCCCC
CGCAAGTCCGTGCACGAGCCCGTGCAGACGCGCTCGCGTGCGGAAGTGAA
GGCCCCCGGCATCATCCCCCGCAAGTCCGTGCACGAGCCCGTGCAGACTG
GCCTGAAGGCCGTGGACGCCCTGATCCCGATCGGGCGCGGGCAGCGTGAG
CTGGTGATCGGTGACCGACAGACGGGAAAGACGGCCATCTGCATCGACAC
GATCATCAACCAGAAGACCAAGGGCGACGACTTGCTCTACTGCACTGGCC
TGAAGGCCGTGGACGCCCTGATCCCGATCGGGCGCGGGCAGCGTGAGCTG
GTGATCGGTGACCGACAGACGGGAAAGACGGCCATCTGCATCGACACGAT
CATCAACCAGAAGACCAAGGGCGACGACTTGCTCTACTGCGGGTGGCTTG
AGGTGGGGGGTCTGTCCGCTGTTGCGACCGGGTGGCTTGAGGTGGGGGGT
CTGTCCGCTGTTGCGACC
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