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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig168.3813.1 vs. uniprot
Match: D7G4T9_ECTSI (Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T9_ECTSI) HSP 1 Score: 152 bits (383), Expect = 9.600e-43 Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 2
Query: 50 MAAPPKPLSVDIHTSVKEGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIASLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVDANEPGEDSEPSVPESVRSQIRSMIENS 547
MAAPPKPLSVDIHTSVKEGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIASLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVDANEPGEDSEPSVPE+VRSQIRSMIENS
Sbjct: 1 MAAPPKPLSVDIHTSVKEGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIASLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVDANEPGEDSEPSVPENVRSQIRSMIENS 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 501 |
| Model size | 754 |
| Exons | 4 |
| Ec32 ortholog | Ec-20_000380.1 |
| Ec32 ortholog description | Ankyrin repeat |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko04131 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | G |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| EggNOG free text desc. | response to abiotic stimulus |
| KEGG ko | ko:K21440 |
| Seed eggNOG ortholog | 2880.D7G4T9 |
| Seed ortholog evalue | 1.7e-34 |
| Seed ortholog score | 152.5 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig168.3813.1 >prot_E-siliculosus-1a_F_contig168.3813.1 ID=prot_E-siliculosus-1a_F_contig168.3813.1|Name=mRNA_E-siliculosus-1a_F_contig168.3813.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=167bp
MAAPPKPLSVDIHTSVKEGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAA
YNHQDIASLLLEKGADIEARDGTGQTPLFWACKGGHGEMITLLLSKGAHI
NAQDTKERTPLHEAARHGQKDTCALLLKRGAKRDTMDVDANEPGEDSEPS
VPESVRSQIRSMIENS* back to topmRNA from alignment at E-siliculosus-1a_F_contig168:40883..44067+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig168.3813.1 ID=mRNA_E-siliculosus-1a_F_contig168.3813.1|Name=mRNA_E-siliculosus-1a_F_contig168.3813.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3185bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig168:40883..44067+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTGGCTCAGGGCTGCTGTCAACAGCCATACCTTCACGACGGCACCATCA
TGGCTGCCCCACCCAAGCCTCTGAGCGTGGATATCCATACGTCGGTGAAA
GAGGGAGACATGGCGAAAGTCCTCGAGTTTTTGGAGGAAGGGGGCGATGT
CAACGTTCGTTGCAGGTAATTTACTGTTTGGCATATTGTAGCACTTTTGG
TCGTCTCTCTGTTCGACATCGAAGAGCAGCACGTGTAAATAGTCTACAGC
GGGTAGGCAGGGTATTTAGAGAGGAGAGCAGCTCTATTACCATGTAACTG
CTGTGATCCCTATGCACCTACGTGCTGCGAGTATGTGCTACCACTGGTCG
TCAACCTTTGACTCTATCGCTAACACCAATGGAAATGAACAAGATGTGTT
TGTCCACAACATGACAACAGCGGAGGCGAGCTCCTACAGCAGTGTACCTG
TCTGCTTTTGCTGTTGTCTTGAGATCGATGCGCCACACGCTCTTTAGGCC
ACAAGACTGTCGTACATCTCACGCCCCACTTTGCAACCGCGACACCATGC
GATTGGGCTGACATGGGTAAGACCAAGTTATTTCTATGCAGCTTGCGACC
AACGTGTACTGCTGTAAAATAGGGATTTCCTCTGCCGTCAAAGGGCAACA
GACGGCAACGTGGGCAAAAGCTCTACAAGAAGACGTGTGTGTTGTTACAT
ATCGAAGGGGTAGTCTTTTTATTTCCAAAAAAGGATTTACCTACACTTGA
CTGGACGAGAGGGTCCTGGGGACTGCTACTGCTTCTAGACTTGTTAAAAG
GCGGGGGTTTCGTTAAAATTTGAAAGGTCCATCCAAAGGAAACGTGTTTG
AAGGAGGACCGGTGTGTCTTTGTACTTACACGTTTGGCAGCCTCTCGGAG
TTCGTTCTATCAGGTCACGCCTGGCTTCGCGTACCGCCCTCAACGGCGCC
CTTTTGTTGACCTTGGCTTTTGTGCGCAAAAGCACGAAAAGATAGCGGAA
AATATCATGCAGCATATCGTGTGTGTGAAGTATGTAATGGTGGCATCACC
CGCGCTACCGACTGACCAAGGAAGACCTGATATGTCTCAGTGCGGCTACT
ATTCAGCAACAAAAGACCCTTCTAATGATTGTGATGTGTGCTAATGGCTC
CTTAGCTCGTGCCTCAGAGCTGGAATTTGGCACACCAACCATCGTGTGCG
CATGGAGGGCAAGGGTTGAAGGGAACCGTGGCTGCGGGAGATGCTCTGGA
TTCCAGGTCCCCACGTCGTTACTACGCACAAAGGCTTCACGTCATCTCGC
AGGGAAATCACAGTCTCCGATCTTCTTCCTGTCTTCTTTCTTGTGTCATG
CTATGTTGTTGCTCCCTGTCAGGTATCGGACCATCCCTCTGCACCGGGCT
GCGGCGTACAACCACCAAGACATTGCCAGTCTGCTGCTAGAAAAGGGGGC
TGATATTGAGGTAACTACGAACGTTGTGTCGTCACTGCGTTCCTGCCTTA
AGCACAAGCATCGGCACTACTGTACAGGAGTGCGTCTTTCATCTTAATCC
CAAACAGCCGTCCTACTCACAAAGCGTGTGCAATGTATGTGACGCGATTT
GGGCCGTTGATTACGACTCCCCAAACACCAGCACCTTTTGTTTTTCATGT
GACAACACCGACATACCGCCCCCGATTTTCCAACACACGCACAACTTTAA
CTTTCTCTCCAACCCTGTCTTCAAGTTGTGTTTGCCCTGTTCCCCACGGT
TTCCGATCATTTTATTTTGCACTTTCCCCAACTTTTTACGTCTACTCAAC
TTCACAAGCTGTTTCGTAATTTTCGTACTACACGCAATCCCTCTACGTCT
TGCCACCCCTCTGCTCTCTGGGAATACATGTATCCCCCATATTTTCCCCG
AGCATGTGCAATGCAGTGGTGCCTGATTCTGCCTGCTGGCCCGTCGAGTC
CCGGTCTAGTTGCCGGACTTAAGGACACACTGCCTCTCATATACCAGTTT
TTTTTTGTTCTCTGTGTGCCTCTTGTTGTGATCTTCCGAACAACGTCCTG
TACCACCACGCCTCTTGACCAGACCTCAACCGTTGGGCGACTGTTCCGGA
GAGGACAAACAAAACTACTTGTAGTCTGCTTCGTGTTCGAGCTCTGCTTG
AAGGGGCTTGTGTATAAGAATCAGTCTGAACTGCTTTGTCGGGACAAGAT
TGTATGGTGACATGATGTCCTGATGACATGATGACATGATGACGTGGTGA
CATGATGAGGTGATGACATGATGGCATAATGACATGAAGACATGAAGACA
TGGATACCATGATGGCATGATCATGAAATACATGATGACATAATGGCTTG
GCATAATGACGCAGGCACGAGACGGGACTGGGCAAACGCCCTTGTTTTGG
GCGTGCAAAGGGGGACACGGGGAGATGATCACCCTCCTGCTTTCCAAGGG
GGCTCACATCAATGCGCAAGACACCAAAGAGGTGATGAGCCAGATAATAC
CACTTCGGTGCTTTGCACAGTACAGGCAGGCGTGGCAAGAGAATATTACT
TGCCTTGCTGGCGTGATCAGAGCCTCGGTAGGACACTGGTAGGACTCCGG
CCTCATTTATTTGGTTTCGCCAAACCTGTCAGCCTTTGTAAGCTGTTCGT
GTTCGTCAAGCGCAACAGTTGTTCTACTCTTGCCAGCGTTTTAGAGGTTA
CATTTGGGATTTTACCTGGGAATGAATCCAGCCTGCAGTTCTTCGCAGCT
TTCGTCGACCACGTGTCCTGTATTGCTTCTACCCTCCCCCCCCCCCCACA
GCGTACGCCACTGCACGAAGCGGCGCGACATGGGCAGAAAGACACTTGCG
CGTTATTGCTCAAGCGAGGCGCAAAACGAGATACCATGGACGTGGACGCG
AACGAACCGGGGGAAGACTCGGAGCCAAGCGTCCCAGAGAGTGTTCGTAG
TCAAATAAGGAGTATGATCGAAAACTCATGATTTTGACAGTTGGTTCGCA
TGTCATGGTATAGACCAGTCGATGGGGGAAAGATTTTGAGCGCATTGGAT
AGAGTGCTATTCACGGACCACTCGCCGCGATGCCAAGCACGCAACGAGGT
ACTGATAAGTTATGTAAAAGCATACTGGTAAGTGAACTGTTAGAGAAGAT
TCGGAGTCGAGGCTACCCGGCAGCATCTACACGTC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig168:40883..44067+ >mRNA_E-siliculosus-1a_F_contig168.3813.1 ID=mRNA_E-siliculosus-1a_F_contig168.3813.1|Name=mRNA_E-siliculosus-1a_F_contig168.3813.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig168:40883..44067+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTGCCCCACCCAAGCCTCTGAGCGTGGATATCCATACGTCGGTGAA
AGAGGGAGACATGGCGAAAGTCCTCGAGTTTTTGGAGGAAGGGGGCGATG
TCAACGTTCGTTGCAGATGGCTGCCCCACCCAAGCCTCTGAGCGTGGATA
TCCATACGTCGGTGAAAGAGGGAGACATGGCGAAAGTCCTCGAGTTTTTG
GAGGAAGGGGGCGATGTCAACGTTCGTTGCAGGTATCGGACCATCCCTCT
GCACCGGGCTGCGGCGTACAACCACCAAGACATTGCCAGTCTGCTGCTAG
AAAAGGGGGCTGATATTGAGGTATCGGACCATCCCTCTGCACCGGGCTGC
GGCGTACAACCACCAAGACATTGCCAGTCTGCTGCTAGAAAAGGGGGCTG
ATATTGAGGCACGAGACGGGACTGGGCAAACGCCCTTGTTTTGGGCGTGC
AAAGGGGGACACGGGGAGATGATCACCCTCCTGCTTTCCAAGGGGGCTCA
CATCAATGCGCAAGACACCAAAGAGGCACGAGACGGGACTGGGCAAACGC
CCTTGTTTTGGGCGTGCAAAGGGGGACACGGGGAGATGATCACCCTCCTG
CTTTCCAAGGGGGCTCACATCAATGCGCAAGACACCAAAGAGCGTACGCC
ACTGCACGAAGCGGCGCGACATGGGCAGAAAGACACTTGCGCGTTATTGC
TCAAGCGAGGCGCAAAACGAGATACCATGGACGTGGACGCGAACGAACCG
GGGGAAGACTCGGAGCCAAGCGTCCCAGAGAGTGTTCGTAGTCAAATAAG
GAGTATGATCGAAAACTCATGACGTACGCCACTGCACGAAGCGGCGCGAC
ATGGGCAGAAAGACACTTGCGCGTTATTGCTCAAGCGAGGCGCAAAACGA
GATACCATGGACGTGGACGCGAACGAACCGGGGGAAGACTCGGAGCCAAG
CGTCCCAGAGAGTGTTCGTAGTCAAATAAGGAGTATGATCGAAAACTCAT
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