mRNA_E-siliculosus-1a_F_contig168.3810.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig168.3810.1
Unique NamemRNA_E-siliculosus-1a_F_contig168.3810.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig168.3810.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 2.340e-122
Identity = 185/199 (92.96%), Postives = 191/199 (95.98%), Query Frame = 3 
Query:   57 MAAVFAACVFLSSSCSGFIVVPANSSPLSAHRRAAVRPPASSSRGLDRCEGGSWLGERPAAV-AIVLQATTDDSSEQVREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLIAQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYIEDAGWQLTDPPFSISG 650
            MAAV A+CVFLS  CSGFIVVPANSSPLSA+RRAAVRPPASSSR L RCEGGSW+GERPAAV AI LQATTDD+SEQ REQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLI+QKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHY+EDAGWQLTDPPFSISG
Sbjct:    1 MAAVLASCVFLSLPCSGFIVVPANSSPLSAYRRAAVRPPASSSRRLARCEGGSWVGERPAAVNAIALQATTDDNSEQAREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_E-siliculosus-1a_F_contig168.3810.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.950e-28
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 3 
Query:  348 KQLNIACNDVVRTILDGNPTNEKERAEALRQRLIAQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYIEDAGWQLTDPPFSISG 650
            K LNIACNDV++TIL  +        + +++RLI  K+ LV  +D  S LF++NL+ VCEH LHP +  L+G+Y  AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   56 KHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig168.3810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI2.340e-12292.96Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA1.950e-2850.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig168contigE-siliculosus-1a_F_contig168:9923..11736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size618
Model size985
Exons2
Ec32 orthologEc-20_000420.1
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Hectar predicted targeting categorychloroplast
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig168.3810.1prot_E-siliculosus-1a_F_contig168.3810.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig168 10255..11701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928180.6023154-UTR-E-siliculosus-1a_F_contig168:9922..102541622928180.6023154-UTR-E-siliculosus-1a_F_contig168:9922..10254Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig168 9923..10254 -
1696318836.568358-UTR-E-siliculosus-1a_F_contig168:9922..102541696318836.568358-UTR-E-siliculosus-1a_F_contig168:9922..10254Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig168 9923..10254 -
1622928180.642201-UTR-E-siliculosus-1a_F_contig168:11701..117361622928180.642201-UTR-E-siliculosus-1a_F_contig168:11701..11736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig168 11702..11736 -
1696318836.6024406-UTR-E-siliculosus-1a_F_contig168:11701..117361696318836.6024406-UTR-E-siliculosus-1a_F_contig168:11701..11736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig168 11702..11736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928180.616439-CDS-E-siliculosus-1a_F_contig168:10254..106501622928180.616439-CDS-E-siliculosus-1a_F_contig168:10254..10650Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig168 10255..10650 -
1696318836.5777836-CDS-E-siliculosus-1a_F_contig168:10254..106501696318836.5777836-CDS-E-siliculosus-1a_F_contig168:10254..10650Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig168 10255..10650 -
1622928180.6307073-CDS-E-siliculosus-1a_F_contig168:11479..117011622928180.6307073-CDS-E-siliculosus-1a_F_contig168:11479..11701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig168 11480..11701 -
1696318836.5871956-CDS-E-siliculosus-1a_F_contig168:11479..117011696318836.5871956-CDS-E-siliculosus-1a_F_contig168:11479..11701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig168 11480..11701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig168.3810.1

>prot_E-siliculosus-1a_F_contig168.3810.1 ID=prot_E-siliculosus-1a_F_contig168.3810.1|Name=mRNA_E-siliculosus-1a_F_contig168.3810.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=206bp
MVLLTTRMAAVFAACVFLSSSCSGFIVVPANSSPLSAHRRAAVRPPASSS
RGLDRCEGGSWLGERPAAVAIVLQATTDDSSEQVREQPTQEASLAAARQE
AARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLIAQKDDLVSPEDD
MSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYIEDAGWQLTDPP
FSISG*
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mRNA from alignment at E-siliculosus-1a_F_contig168:9923..11736-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig168.3810.1 ID=mRNA_E-siliculosus-1a_F_contig168.3810.1|Name=mRNA_E-siliculosus-1a_F_contig168.3810.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1814bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig168:9923..11736- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCGCCTCGCATCTACGTCGTATACACGCGAACGATGGTACTCCTAACC
ACACGAATGGCGGCCGTGTTCGCTGCGTGTGTGTTTCTCTCATCGTCTTG
CTCCGGTTTCATCGTGGTACCAGCGAATTCGTCTCCGTTATCAGCCCATC
GAAGAGCAGCAGTTCGGCCGCCTGCAAGCAGCAGCCGTGGTTTAGATCGG
TGCGAAGGAGGAAGCTGGCTAGGAGAGCGGCCAGCAGCAGTAGCCATCGT
GCTGCAGGTGGGTGGTGCAATGTTTGGGTCTCTCCTTCATCGTTTACCCT
TAGACTATTATGCAAAAGACCGGAGAGAACGGAACATGTGTATCGTGCTG
TTACACATGACATGCACGCATGTTTCTCATGGCGTTCATGTTGATGCATC
CGATGCGGTGCCTACCGGCCGTCGTTCAACGGTCAAGGGCAGCTGTCTGC
TGTAGACCACTCACAAGTAGTATGGCCTAGTGCTGGGGCAGTATGGAACT
AGAGCTGGGACAGAAACTGCTCTAGTACTGGAAGCAGCATGAGAAAAAAT
ATGAAACTACAGTAGGAAATAGGCCCCTAGGGTACACGTAGCAGTAGCCT
TCGGTGCCAGCCAGCGGCAACAAACTGCCGTTGTAATAGTTGTTTGAGTC
GGTCAGGGGGCCGGTTCGGCATCCCTCTCCCGTGCCCCCTTTGCAGGGGT
GCTTACGTGGCCGTCGTCGTGACAACTACATTGTTGTATACTCGCAGTAC
AACATACAAGGCGGTGCTTTCGTACGCATCTTTAGCATCTTTCGCAAGCA
TCAGAAATGCTTCACTTTTTTGGATACAAGAGTTGGAGTTCTCTGGCAAC
AGCATGTCTTCGGGCCCCCACACCCTTCCTCGCCGTCCTCTAGACTAAAT
AAGATACCTAAAATACGGGTATATATAGCAGGTGCATGCAGTGTGCCCAA
GACGACGCTGCCGTTTGCGTACTGTAGACCGCATTTTCCAGACGTATGAA
GGCTTCCATCAGAGAGCACCGCGGACCACATGACGCCATCCAGTGAACAC
ACCATCCACTGCAATCGTTTGTTCACGTCCGTGCAGGCGACGACCGATGA
TAGTAGCGAGCAGGTCCGCGAACAACCAACGCAGGAGGCAAGCTTGGCGG
CAGCACGACAAGAGGCGGCGAGGAGCAAGCAGTTGAACATCGCGTGCAAC
GACGTCGTCCGCACCATCCTGGACGGAAACCCGACCAACGAGAAGGAGAG
GGCCGAGGCCCTGCGGCAAAGATTGATCGCGCAGAAGGACGACCTGGTCT
CCCCGGAGGACGACATGTCGGCGCTCTTCTTCGACAACCTGCTATTGGTG
TGCGAGCACGAGCTGCACCCTGACATCGGCATCCTGCGGGGGCAGTACGG
CAAGGCTTGGAACACCATCCTGCACTACATTGAAGACGCAGGGTGGCAGC
TCACGGATCCCCCGTTTTCGATCTCAGGGTAGATTTTGGTTTGGACGGAT
ACAACGTCGAAAAACTTCACTTCGTTGTTATGCCATGTAGAGACGCTAGA
TAGATTGTATGCGTTGCGAGCGCGCAGCGAACATCCCAAAGCGTACCCAG
CTTTTGTGTTCCATGTCCATTTTAGAGTAGCGGTGTTGCTTGGTGTCTGG
TCTTGTTCTGGGCTTGTTTTTGCTCGGTCTTCGTATGGTCGTGTTGTTTT
GTTGATCCGGTGGTGACGTGTAGTTAGAACACCTCCACAACTTGCTCAGA
AGCAAAGCACGTGGGTGTCAGAGCGGACACAGTAGTTTCAAAGAGAGGTT
TTGATCAATTGACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig168:9923..11736-

>mRNA_E-siliculosus-1a_F_contig168.3810.1 ID=mRNA_E-siliculosus-1a_F_contig168.3810.1|Name=mRNA_E-siliculosus-1a_F_contig168.3810.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig168:9923..11736- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTACTCCTAACCACACGAATGGCGGCCGTGTTCGCTGCGTGTGTGTT
TCTCTCATCGTCTTGCTCCGGTTTCATCGTGGTACCAGCGAATTCGTCTC
CGTTATCAGCCCATCGAAGAGCAGCAGTTCGGCCGCCTGCAAGCAGCAGC
CGTGGTTTAGATCGGTGCGAAGGAGGAAGCTGGCTAGGAGAGCGGCCAGC
AGCAGTAGCCATCGTGCTGCAGATGGTACTCCTAACCACACGAATGGCGG
CCGTGTTCGCTGCGTGTGTGTTTCTCTCATCGTCTTGCTCCGGTTTCATC
GTGGTACCAGCGAATTCGTCTCCGTTATCAGCCCATCGAAGAGCAGCAGT
TCGGCCGCCTGCAAGCAGCAGCCGTGGTTTAGATCGGTGCGAAGGAGGAA
GCTGGCTAGGAGAGCGGCCAGCAGCAGTAGCCATCGTGCTGCAGGCGACG
ACCGATGATAGTAGCGAGCAGGTCCGCGAACAACCAACGCAGGAGGCAAG
CTTGGCGGCAGCACGACAAGAGGCGGCGAGGAGCAAGCAGTTGAACATCG
CGTGCAACGACGTCGTCCGCACCATCCTGGACGGAAACCCGACCAACGAG
AAGGAGAGGGCCGAGGCCCTGCGGCAAAGATTGATCGCGCAGAAGGACGA
CCTGGTCTCCCCGGAGGACGACATGTCGGCGCTCTTCTTCGACAACCTGC
TATTGGTGTGCGAGCACGAGCTGCACCCTGACATCGGCATCCTGCGGGGG
CAGTACGGCAAGGCTTGGAACACCATCCTGCACTACATTGAAGACGCAGG
GTGGCAGCTCACGGATCCCCCGTTTTCGATCTCAGGGTAGGCGACGACCG
ATGATAGTAGCGAGCAGGTCCGCGAACAACCAACGCAGGAGGCAAGCTTG
GCGGCAGCACGACAAGAGGCGGCGAGGAGCAAGCAGTTGAACATCGCGTG
CAACGACGTCGTCCGCACCATCCTGGACGGAAACCCGACCAACGAGAAGG
AGAGGGCCGAGGCCCTGCGGCAAAGATTGATCGCGCAGAAGGACGACCTG
GTCTCCCCGGAGGACGACATGTCGGCGCTCTTCTTCGACAACCTGCTATT
GGTGTGCGAGCACGAGCTGCACCCTGACATCGGCATCCTGCGGGGGCAGT
ACGGCAAGGCTTGGAACACCATCCTGCACTACATTGAAGACGCAGGGTGG
CAGCTCACGGATCCCCCGTTTTCGATCTCAGGGTAG
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