mRNA_E-siliculosus-1a_F_contig167.3760.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig167.3760.1
Unique NamemRNA_E-siliculosus-1a_F_contig167.3760.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 442 bits (1137), Expect = 1.040e-156
Identity = 224/232 (96.55%), Postives = 225/232 (96.98%), Query Frame = 1
Query:    1 MSRAETILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEGEDGLP 696
            MSRA+TILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK     EGRLFALQNGLDYFETSAAGAKGIDAPFHHMAT FHETYEKTIEGAEGE GLP
Sbjct:    1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK-----EGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGEGGLP 227          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 2.090e-115
Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 1
Query:    1 MSRAETILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKA 525
            MSRA+TILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALP+ SAPLPGVVIANKSDLREGGINARAVV T+A
Sbjct:    1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVVGTEA 175          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.570e-83
Identity = 126/209 (60.29%), Postives = 161/209 (77.03%), Query Frame = 1
Query:   67 MQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEGEDGL 693
            M+  H+  LMLR+KVV+VGDA VGKT++ QM  S GH+YPKNY+MT  VDF VKQ+++PE +C VELFLFDC GQGVFNKL+  A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA  PT +AP+PGV+I +K+DLREG   +RAVV+ +     EG  FA +NGL YFE SAA + G++APF HMA +FH  YE ++  AEG  G+
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVVDAQ-----EGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV 200          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 256 bits (653), Expect = 6.050e-83
Identity = 123/214 (57.48%), Postives = 164/214 (76.64%), Query Frame = 1
Query:   49 QSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEGEDG 690
            +S +RSM++ H+  LMLR KVV+VGDACVGK+++VQMF  GG  YPKNY+MT GV F VKQV +P+T+C VEL+LFDC GQ +FN+ EQ    +EN ++V VV+DV NRDSF+SC +WLQGVR+     S+ +PGV++ANKSDLREGGIN+RA V  +     EGR FA +N L++FETSAA AK +DAPF+ +A++FH+ YE+T++ AE   G
Sbjct:   26 KSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRST--RQSSMIPGVLVANKSDLREGGINSRAAVSDE-----EGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALSG 232          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.990e-70
Identity = 104/207 (50.24%), Postives = 151/207 (72.95%), Query Frame = 1
Query:   49 QSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIE 669
            QSG+RSM+T+H+T ++LR K+++VGDACVGKT++ Q F SGG  YPKNY+MTIG +F VKQV +PET+ +VELF++DC GQ +FN+L+  + YYENA+ V VV++V+NRDS  SC +W+ GV+A +  +  PL G  + NK + R+G I++RA V+     + E +  A   G+ YFETSAA   G+DAPF ++A  F+  YE+T++
Sbjct:    2 QSGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKA-IQNSGVPLVGAFVGNKCEFRDGSIDSRAEVD-----ILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ 202          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S3JRK5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK5_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.700e-67
Identity = 118/218 (54.13%), Postives = 149/218 (68.35%), Query Frame = 1
Query:   25 SGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
            S S A   QS VRSM++ HR+ LMLR KVVVVGDA VGK++++ MF SGG  +PK Y+MT  VDF VKQV +PE+   VEL+LFDC GQ +FN++E   A+YENA+F+C+V+DVSN  SFESCG+WLQ V  + P+    LPGV+IANK DL  GG   R VV T+     +G+ FA  N L YFETSA   +  D PF H+A  F + YE TI  A+
Sbjct:    4 SKSSAVEYQSAVRSMESGHRSILMLRCKVVVVGDAAVGKSALISMFHSGGSSFPKQYLMTAWVDFRVKQVSIPESSTAVELYLFDCGGQSIFNQIEANNAHYENASFLCLVYDVSNASSFESCGKWLQMVSKSRPS----LPGVLIANKKDL--GGELGRRVVSTQ-----KGQEFASANNLAYFETSALEGE-FDEPFRHIAIEFAKKYEDTIAHAQ 209          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S0SQ35_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQ35_9STRA)

HSP 1 Score: 212 bits (539), Expect = 9.010e-66
Identity = 102/209 (48.80%), Postives = 150/209 (71.77%), Query Frame = 1
Query:   52 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
            SG+RSM + H++  +LR K+V++GD+CVGK+S++Q+F+SGG  YPKNY+MTIG DF VKQV +P+T+ VVEL++FDC GQ +FN+LE  + YYENAA V VV+D+ N+++ +S  +WL G+++A+   S  L GV++ NKSD R+G +++RA V  + +  F   L     GL YFE SAA   G+  PF H+AT F++ YE T+  A+
Sbjct:   14 SGIRSMDSKHKSLTVLRCKLVIIGDSCVGKSSLLQVFQSGGTTYPKNYMMTIGADFNVKQVPIPDTNIVVELYIFDCAGQPIFNQLEMNSKYYENAAAVMVVYDIGNQETLQSTTKWLTGLKSAVSNPS-DLIGVLVGNKSDYRDGSVDSRAEVVKEDAQRFSKDL-----GLAYFEASAASNIGVTEPFLHVATEFYKKYEDTLRKAD 216          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.540e-64
Identity = 112/215 (52.09%), Postives = 143/215 (66.51%), Query Frame = 1
Query:   34 VAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
            V  P +S +RSM+TTHRT LMLR KVVVVGDA VGK++++ MF SGG  YPK Y+MT  VDF VKQV +P+T   VEL+LFDC G  VFN++E+ A+ Y+ A F+ VV+DV+  DSF SC +W+QGVR         LPGV++ANK DL E     R VV+ +      GR FA +NGL YFETSA      + PF H+A  F + YE+T+  AE
Sbjct:   21 VPEPMESCLRSMETTHRTILMLRCKVVVVGDATVGKSALISMFHSGGASYPKQYVMTSWVDFRVKQVDIPDTSTAVELYLFDCAGDPVFNQVEENASQYDQAGFLFVVYDVTKEDSFASCAKWIQGVRKGREDR---LPGVLVANKIDLEE-----RRVVDEQ-----RGRDFAKENGLVYFETSALQGN-YEGPFRHVAMEFAKKYEETVARAE 221          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL)

HSP 1 Score: 204 bits (519), Expect = 4.200e-63
Identity = 100/208 (48.08%), Postives = 145/208 (69.71%), Query Frame = 1
Query:   52 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGA 675
            SG+RSM+TTH++T +LR KV +VG+A VGKT+VVQ+ KS GH++PKNY+MT  V+   K + +P+T+ VVEL+LFDC GQ +FN+L+ G  +Y+ A+   VVFDV+N++SF+SC +W Q VR A P  +  +PGV++ANK+DLR    N R  + TK     E   FA +N + +FE SA    G++APF ++A  FH+ Y+ T + A
Sbjct:    2 SGLRSMETTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN--IPGVLLANKTDLR---YNNRDAISTK-----EAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199          
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S1XUM6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUM6_9STRA)

HSP 1 Score: 204 bits (519), Expect = 3.410e-62
Identity = 104/206 (50.49%), Postives = 143/206 (69.42%), Query Frame = 1
Query:   40 APSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPE--TDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHET 651
            A ++SG+RSM+T+   TLMLR KVV+VGDACVGKT++  MF+S    YP+ Y MT  V+F VK V V     +   EL+LFDC GQ +FN++   +  +ENA++V +V+DV+NR+SF+SCGRWLQ +R+  P++  P+PGV++ANK DLR   +++RA V     T  EGR FA +NGL YFE SA    GI+ PFHH+A  F+ T
Sbjct:   16 AEAESGLRSMKTSFVPTLMLRCKVVIVGDACVGKTAIASMFESNLQQYPRKYNMTTTVEFTVKLVPVRAEGVNVAAELYLFDCAGQSIFNQVGTNSKNFENASYVIIVYDVANRESFQSCGRWLQQIRSTRPSSGPPIPGVLLANKIDLRSDMLSSRAEV-----TESEGRGFAAENGLAYFECSALQGAGINEPFHHIANTFYVT 216          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJQ1_ECTSI1.040e-15696.55IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A6H5KZL0_9PHAE2.090e-11597.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCC9_9STRA1.570e-8360.29IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A7S2XVJ0_9STRA6.050e-8357.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3M1Q0_9STRA5.990e-7050.24Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3JRK5_9STRA1.700e-6754.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0SQ35_9STRA9.010e-6648.80Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A8J2SZ95_9STRA5.540e-6452.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0N7L680_PLAHL4.200e-6348.08Intraflagellar transport protein 27 homolog n=1 Ta... [more]
A0A7S1XUM6_9STRA3.410e-6250.49Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig167contigE-siliculosus-1a_F_contig167:27857..31628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size699
Model size699
Exons5
Ec32 orthologEc-06_010640.1
Ec32 ortholog descriptionIFT27, Ras superfamily GTPase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03036,ko04031
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0079@1,KOG0079@2759
EggNOG free text desc.GTPase activity
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
KEGG koko:K07934
Preferred nameIFT27
Seed eggNOG ortholog2880.D7FJQ1
Seed ortholog evalue2.3e-122
Seed ortholog score444.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig167.3760.1prot_E-siliculosus-1a_F_contig167.3760.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig167 27857..31628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928169.5500433-CDS-E-siliculosus-1a_F_contig167:27856..279051622928169.5500433-CDS-E-siliculosus-1a_F_contig167:27856..27905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 27857..27905 -
1696318833.521564-CDS-E-siliculosus-1a_F_contig167:27856..279051696318833.521564-CDS-E-siliculosus-1a_F_contig167:27856..27905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 27857..27905 -
1622928169.5698004-CDS-E-siliculosus-1a_F_contig167:28468..285811622928169.5698004-CDS-E-siliculosus-1a_F_contig167:28468..28581Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 28469..28581 -
1696318833.5315845-CDS-E-siliculosus-1a_F_contig167:28468..285811696318833.5315845-CDS-E-siliculosus-1a_F_contig167:28468..28581Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 28469..28581 -
1622928169.5840385-CDS-E-siliculosus-1a_F_contig167:30256..304781622928169.5840385-CDS-E-siliculosus-1a_F_contig167:30256..30478Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 30257..30478 -
1696318833.5484538-CDS-E-siliculosus-1a_F_contig167:30256..304781696318833.5484538-CDS-E-siliculosus-1a_F_contig167:30256..30478Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 30257..30478 -
1622928169.596094-CDS-E-siliculosus-1a_F_contig167:30800..309141622928169.596094-CDS-E-siliculosus-1a_F_contig167:30800..30914Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 30801..30914 -
1696318833.5609648-CDS-E-siliculosus-1a_F_contig167:30800..309141696318833.5609648-CDS-E-siliculosus-1a_F_contig167:30800..30914Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 30801..30914 -
1622928169.6093981-CDS-E-siliculosus-1a_F_contig167:31427..316281622928169.6093981-CDS-E-siliculosus-1a_F_contig167:31427..31628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 31428..31628 -
1696318833.5705078-CDS-E-siliculosus-1a_F_contig167:31427..316281696318833.5705078-CDS-E-siliculosus-1a_F_contig167:31427..31628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig167 31428..31628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig167.3760.1

>prot_E-siliculosus-1a_F_contig167.3760.1 ID=prot_E-siliculosus-1a_F_contig167.3760.1|Name=mRNA_E-siliculosus-1a_F_contig167.3760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=233bp
MSRAETILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSV
VQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVF
NKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLP
GVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGA
KGIDAPFHHMATRFHETYEKTIEGAEGEDGLP*
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mRNA from alignment at E-siliculosus-1a_F_contig167:27857..31628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig167.3760.1 ID=mRNA_E-siliculosus-1a_F_contig167.3760.1|Name=mRNA_E-siliculosus-1a_F_contig167.3760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3772bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig167:27857..31628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCGGGCTGAGACAATTTTGTCGGGGTCCGTTGCGGCACCGTCCCA GAGCGGAGTCCGCAGCATGCAAACAACTCACAGAACGACGTTGATGCTTC GAGCCAAGGTCGTTGTTGTCGGAGACGCTTGCGTGGGGAAAACATCGGTG GTGCAGATGTTCAAGAGTGGCGGCCACGACTACCCAAAGAACTACATCAT GGTGAGGTACTGCTGTTCGAGGTCTCATCGGAAAATAGTTGTCTATCTGC GTATGGCCTAACAACATTTTTCAGTACTTTCAAATGTATACATACGCTTG GCTCGGTGCAGCACATACATGCTGCGTGCGGTTGCTGCGTGCGGTTGTTG CCGTGTACGTAACCGTGGTACGATTTCTTTGGAAGGGTTTGTTGACATGC AGCAGTCAACATGCGATATGTGCAGCAGGAGGGGAGATCACACTCAGCCT TTGATTTGGGTTTGGATCTCCCGGGATATTGCCCACTATCGGAGTATGGT ACACAAGCAAGTTGTGCAAGGCAAACTACATCCATTGTGTACTCCAGACA AGTTGATGCACTTCACATTTTTCGCTCACTATAGCTGTAATATCCACTCA TCTACGTAATACTACAGCTGCTTGGGCTTGTCCTAATATTCCCCAGTCCT CTATGCACTCTTGCATCCAATGCGATATTTATCGTCGACCCTAAACACCA CAAACACCCCGCAGACCATCGGGGTAGACTTTGGAGTGAAGCAGGTGAAA GTCCCCGAGACGGACTGCGTGGTAGAGCTGTTTCTGTTCGATTGCCCTGG ACAAGGAGTTTTCAACAAGCTTGAACAGGTTAGTTAGGGGATCGAGAATG CGGTGGAGCGTGCATGGCATGGTGCAACGTTTTCTGACTTACAGGTTGCA GTCCTTCTCGCCCGTCTCTACAGCACGGTACACAGCCGTTGGGTCTTGTT TGCCCTTTTAAGCCCTAACTGCTGTTATTTAGAGAAAGTAGGAGGGTTTC TCTACCTGAGAATTCCGAACTATCGAATGCACGCAACGAAAGACCTGCGG CAGAGCAGTGTTGCCAATTTAACTTGAGGCTGAAGCCCGAATAAATGACG CCGCACTGTTGTTTGGCAATTGTTTTCTTGTTGTCGTCGTCCGCATAAAG GGGGCGGCATACTACGAGAACGCAGCGTTTGTATGTGTGGTGTTCGACGT GAGCAACAGGGATTCCTTTGAAAGCTGTGGGCGGTGGCTGCAGGGAGTAC GAGCGGCCCTGCCAACCACGTCGGCACCCCTGCCGGGGGTTGTAATCGCC AACAAGTCGGACTTGAGGGAAGGAGGTATCAATGCCAGGGCCGTCGTCGA AACCAAGGCAAGTACCCTGTTTGTTACGTTTGAGAGTAAAGTGGCATCCA CCCAACTCACGTTCATGTAACTACCCCATCGAATACTTGCGCGAAGCCTC AGGACTTTTTCCGGCGTCCAATCCGATGTGGTGCATGTTGAAATACAGAG CATTCCATCCATGTAGAAATTTCTTTCCACCATGTTGTCTCAACTTCGAA ATAATATTTTTTACCGCAGAATCTATGATATCACTACTAACTTCTCTTCA ACCACGTTGTTCCACTTGGTTTCAGCTACACTGATTGCAGTTTGTTGCAA TTCTTGTGTTACTTTTTCCAGGTATTCAGACACCTTGTTGTTCACCTACA CTCGTTTGTTTCTTCACTTCTTCCTTCATACTTTGCATAAGCAAATCCTT GCAATAGAGCTGTCCTTGTTCTTGAGATGATTTTATGATTTCTCCGTGGA GTCCAGAGATGATCTCCTCGTAGTTGGGACTCGGCTTAGCATTTTTCCAC TGCTTGCTGGTCCACATCCTGCTGATGGTTGTAAACCTTCCTGCCGCGAA CATCACTTGTGCAATGTGCATGTTTGCGGCTGGAACAAGTGATGTTCGCG GCAGGGAGGTTCACAACCATCTGTAGGATGTGAACCAGCAAGCAGTGGAA AAATGCTAAGCCGAGTCCCAACTATGAGGAGATATCTGGACTCAACGGAG AAATCATGAAACTATGTCAAGAACAAGAACAGGTCTATTGCAGGGATGTT CTTATGCAGAGTATGAAGGAAGAAGTTGAGAAACAAACGAGTTTATGTGA ATAACAAGGTGTCCGAATAACTGGATGAAGTAACACAAGAATTGCAACAA ACTGCACTCAGTGTAGCTGAAACCAACTGGAAGAACTTGGTGAAGATAAG TTAAGTGCAGTGATAGATTCTGCGGCCAAAAATATTGAGAGACGGAATGG TGGAAAGAAATTCGGTCGTAAGTAGAGGGATAAAGTAAATGAGAAGGTTA ACTTTTGAGAGGCAGTTGTTGAAGAATATTCATACCTATATATGGGGGCG TGTACAATGCAGTACAATGGAATAGGTACCAGACCTGCAGGATTTGTGGA GATTTTGAGCAACGATGAGGTTGTTGAAGCGCACGTAACATTGCATCCAT CATGGGGGCGTGTTGAAATCAGAGCAATACTGCGGTAGGATGTGTGCAGT AAGATAGATGCTGTTGTATGATTGCTGTATGCAATGATACGTACAGATGC GGTATGATAAACGGCGTTTGGGTGAACAAGTAGCGACGAGTTGTAGCGAG GAGCTCGTGCATGAATTGATGTTGATCAGAGGATGATAATTGTAGCGAGA GCACGAGGTGTTGCGAGCCCCCACTAGGCTCAGTCTCAACTATCCCTCAA CATCTCAACTTTGCACGTAAGCTGTGAAGTGAACAAGACTGAGAAGTACA AGTCCTTGAAGCGGCATTTAGCAATAACACCGACTTCGGTCGCTGCCTCA ACAGACTTCGGTCTGCACAGACTTTGGTCTGAACATTACACAGAATTCTG TCTGGAACTGCACAAAGGCTTAACCACCTGGAGACGACCTTGGGTAAAGG GAACCTCGACACTACACATTTCTACAGTGCATTCCCGTCTGTCTCTGGAT TCCTGCCGAATCTCCTCGGTTTGGCATTGCCGCATGCTCGCTTGCAGGAG GGGCGACTATTCGCCCTTCAGAATGGCCTAGACTACTTCGAAACGTCTGC AGCGGGGGCGAAAGGTATCGATGCGCCGTTCCACCATATGGCGACAAGGT TCCACGAAACGTGAGTGATATCCACGATACATGAAAATTGATTATTTGCT CGCCACCATGCGTGATGCGTAACTCACACCAAGCGCTTATCGCGGTTTCC GTCGAGTCAATTATTTTGAAAATTGGAATTGTGTGATCTTGTATCCTTCC GTGCGTCGTCTCCATGTCAACTGGATGACGTTTCAGAGATGATGAGGGTT AGGGAGCGATACTTCTAAGAATGATTGGACAGGTGAACCCTCGTACATTC GCCCGGTAAATACGCATGATTGGTTATACGTTAAACAAACGGAAACAAAC CCCGAGAGCGGCATCATACCTTGAAATACCACATCGAAACTACGATTACT GCAAGATTTTTCGTATTTTTGGCATTTGCTCTCTTCTCGAGGTTGTCTAT ACCCTTTCGGTTGCGACAGGTGCTCCTAATGCAGCCCGTTGAACCGACTG CATGTGACCGGAGGATGTTTGGCTAGAAAAGCTTCGCGCTACTTTCTTGA CAACTCCGTCCATGCTCTTGCCTGACTGTCTGCTATGGTCATAAATCACT ACGGCACCTAACGGGACCTACAGCTACGAGAAGACCATCGAGGGGGCGGA GGGCGAGGATGGGCTTCCTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig167:27857..31628-

>mRNA_E-siliculosus-1a_F_contig167.3760.1 ID=mRNA_E-siliculosus-1a_F_contig167.3760.1|Name=mRNA_E-siliculosus-1a_F_contig167.3760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig167:27857..31628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCGGGCTGAGACAATTTTGTCGGGGTCCGTTGCGGCACCGTCCCA
GAGCGGAGTCCGCAGCATGCAAACAACTCACAGAACGACGTTGATGCTTC
GAGCCAAGGTCGTTGTTGTCGGAGACGCTTGCGTGGGGAAAACATCGGTG
GTGCAGATGTTCAAGAGTGGCGGCCACGACTACCCAAAGAACTACATCAT
GATGTCTCGGGCTGAGACAATTTTGTCGGGGTCCGTTGCGGCACCGTCCC
AGAGCGGAGTCCGCAGCATGCAAACAACTCACAGAACGACGTTGATGCTT
CGAGCCAAGGTCGTTGTTGTCGGAGACGCTTGCGTGGGGAAAACATCGGT
GGTGCAGATGTTCAAGAGTGGCGGCCACGACTACCCAAAGAACTACATCA
TGACCATCGGGGTAGACTTTGGAGTGAAGCAGGTGAAAGTCCCCGAGACG
GACTGCGTGGTAGAGCTGTTTCTGTTCGATTGCCCTGGACAAGGAGTTTT
CAACAAGCTTGAACAGACCATCGGGGTAGACTTTGGAGTGAAGCAGGTGA
AAGTCCCCGAGACGGACTGCGTGGTAGAGCTGTTTCTGTTCGATTGCCCT
GGACAAGGAGTTTTCAACAAGCTTGAACAGGGGGCGGCATACTACGAGAA
CGCAGCGTTTGTATGTGTGGTGTTCGACGTGAGCAACAGGGATTCCTTTG
AAAGCTGTGGGCGGTGGCTGCAGGGAGTACGAGCGGCCCTGCCAACCACG
TCGGCACCCCTGCCGGGGGTTGTAATCGCCAACAAGTCGGACTTGAGGGA
AGGAGGTATCAATGCCAGGGCCGTCGTCGAAACCAAGGCAAGTACCCTGT
TTGGGGCGGCATACTACGAGAACGCAGCGTTTGTATGTGTGGTGTTCGAC
GTGAGCAACAGGGATTCCTTTGAAAGCTGTGGGCGGTGGCTGCAGGGAGT
ACGAGCGGCCCTGCCAACCACGTCGGCACCCCTGCCGGGGGTTGTAATCG
CCAACAAGTCGGACTTGAGGGAAGGAGGTATCAATGCCAGGGCCGTCGTC
GAAACCAAGGCAAGTACCCTGTTTGAGGGGCGACTATTCGCCCTTCAGAA
TGGCCTAGACTACTTCGAAACGTCTGCAGCGGGGGCGAAAGGTATCGATG
CGCCGTTCCACCATATGGCGACAAGGTTCCACGAAACGAGGGGCGACTAT
TCGCCCTTCAGAATGGCCTAGACTACTTCGAAACGTCTGCAGCGGGGGCG
AAAGGTATCGATGCGCCGTTCCACCATATGGCGACAAGGTTCCACGAAAC
CTACGAGAAGACCATCGAGGGGGCGGAGGGCGAGGATGGGCTTCCTTGAC
TACGAGAAGACCATCGAGGGGGCGGAGGGCGAGGATGGGCTTCCTTGA
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