mRNA_E-siliculosus-1a_F_contig167.3760.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI) HSP 1 Score: 442 bits (1137), Expect = 1.040e-156 Identity = 224/232 (96.55%), Postives = 225/232 (96.98%), Query Frame = 1
Query: 1 MSRAETILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEGEDGLP 696
MSRA+TILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK EGRLFALQNGLDYFETSAAGAKGIDAPFHHMAT FHETYEKTIEGAEGE GLP
Sbjct: 1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK-----EGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGEGGLP 227
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE) HSP 1 Score: 337 bits (865), Expect = 2.090e-115 Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 1
Query: 1 MSRAETILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKA 525
MSRA+TILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALP+ SAPLPGVVIANKSDLREGGINARAVV T+A
Sbjct: 1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVVGTEA 175
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.570e-83 Identity = 126/209 (60.29%), Postives = 161/209 (77.03%), Query Frame = 1
Query: 67 MQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEGEDGL 693
M+ H+ LMLR+KVV+VGDA VGKT++ QM S GH+YPKNY+MT VDF VKQ+++PE +C VELFLFDC GQGVFNKL+ A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA PT +AP+PGV+I +K+DLREG +RAVV+ + EG FA +NGL YFE SAA + G++APF HMA +FH YE ++ AEG G+
Sbjct: 1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVVDAQ-----EGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV 200
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA) HSP 1 Score: 256 bits (653), Expect = 6.050e-83 Identity = 123/214 (57.48%), Postives = 164/214 (76.64%), Query Frame = 1
Query: 49 QSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAEGEDG 690
+S +RSM++ H+ LMLR KVV+VGDACVGK+++VQMF GG YPKNY+MT GV F VKQV +P+T+C VEL+LFDC GQ +FN+ EQ +EN ++V VV+DV NRDSF+SC +WLQGVR+ S+ +PGV++ANKSDLREGGIN+RA V + EGR FA +N L++FETSAA AK +DAPF+ +A++FH+ YE+T++ AE G
Sbjct: 26 KSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRST--RQSSMIPGVLVANKSDLREGGINSRAAVSDE-----EGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALSG 232
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA) HSP 1 Score: 222 bits (565), Expect = 5.990e-70 Identity = 104/207 (50.24%), Postives = 151/207 (72.95%), Query Frame = 1
Query: 49 QSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIE 669
QSG+RSM+T+H+T ++LR K+++VGDACVGKT++ Q F SGG YPKNY+MTIG +F VKQV +PET+ +VELF++DC GQ +FN+L+ + YYENA+ V VV++V+NRDS SC +W+ GV+A + + PL G + NK + R+G I++RA V+ + E + A G+ YFETSAA G+DAPF ++A F+ YE+T++
Sbjct: 2 QSGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKA-IQNSGVPLVGAFVGNKCEFRDGSIDSRAEVD-----ILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ 202
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S3JRK5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK5_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.700e-67 Identity = 118/218 (54.13%), Postives = 149/218 (68.35%), Query Frame = 1
Query: 25 SGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
S S A QS VRSM++ HR+ LMLR KVVVVGDA VGK++++ MF SGG +PK Y+MT VDF VKQV +PE+ VEL+LFDC GQ +FN++E A+YENA+F+C+V+DVSN SFESCG+WLQ V + P+ LPGV+IANK DL GG R VV T+ +G+ FA N L YFETSA + D PF H+A F + YE TI A+
Sbjct: 4 SKSSAVEYQSAVRSMESGHRSILMLRCKVVVVGDAAVGKSALISMFHSGGSSFPKQYLMTAWVDFRVKQVSIPESSTAVELYLFDCGGQSIFNQIEANNAHYENASFLCLVYDVSNASSFESCGKWLQMVSKSRPS----LPGVLIANKKDL--GGELGRRVVSTQ-----KGQEFASANNLAYFETSALEGE-FDEPFRHIAIEFAKKYEDTIAHAQ 209
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S0SQ35_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQ35_9STRA) HSP 1 Score: 212 bits (539), Expect = 9.010e-66 Identity = 102/209 (48.80%), Postives = 150/209 (71.77%), Query Frame = 1
Query: 52 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
SG+RSM + H++ +LR K+V++GD+CVGK+S++Q+F+SGG YPKNY+MTIG DF VKQV +P+T+ VVEL++FDC GQ +FN+LE + YYENAA V VV+D+ N+++ +S +WL G+++A+ S L GV++ NKSD R+G +++RA V + + F L GL YFE SAA G+ PF H+AT F++ YE T+ A+
Sbjct: 14 SGIRSMDSKHKSLTVLRCKLVIIGDSCVGKSSLLQVFQSGGTTYPKNYMMTIGADFNVKQVPIPDTNIVVELYIFDCAGQPIFNQLEMNSKYYENAAAVMVVYDIGNQETLQSTTKWLTGLKSAVSNPS-DLIGVLVGNKSDYRDGSVDSRAEVVKEDAQRFSKDL-----GLAYFEASAASNIGVTEPFLHVATEFYKKYEDTLRKAD 216
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA) HSP 1 Score: 207 bits (527), Expect = 5.540e-64 Identity = 112/215 (52.09%), Postives = 143/215 (66.51%), Query Frame = 1
Query: 34 VAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGAE 678
V P +S +RSM+TTHRT LMLR KVVVVGDA VGK++++ MF SGG YPK Y+MT VDF VKQV +P+T VEL+LFDC G VFN++E+ A+ Y+ A F+ VV+DV+ DSF SC +W+QGVR LPGV++ANK DL E R VV+ + GR FA +NGL YFETSA + PF H+A F + YE+T+ AE
Sbjct: 21 VPEPMESCLRSMETTHRTILMLRCKVVVVGDATVGKSALISMFHSGGASYPKQYVMTSWVDFRVKQVDIPDTSTAVELYLFDCAGDPVFNQVEENASQYDQAGFLFVVYDVTKEDSFASCAKWIQGVRKGREDR---LPGVLVANKIDLEE-----RRVVDEQ-----RGRDFAKENGLVYFETSALQGN-YEGPFRHVAMEFAKKYEETVARAE 221
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL) HSP 1 Score: 204 bits (519), Expect = 4.200e-63 Identity = 100/208 (48.08%), Postives = 145/208 (69.71%), Query Frame = 1
Query: 52 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHETYEKTIEGA 675
SG+RSM+TTH++T +LR KV +VG+A VGKT+VVQ+ KS GH++PKNY+MT V+ K + +P+T+ VVEL+LFDC GQ +FN+L+ G +Y+ A+ VVFDV+N++SF+SC +W Q VR A P + +PGV++ANK+DLR N R + TK E FA +N + +FE SA G++APF ++A FH+ Y+ T + A
Sbjct: 2 SGLRSMETTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN--IPGVLLANKTDLR---YNNRDAISTK-----EAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Match: A0A7S1XUM6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUM6_9STRA) HSP 1 Score: 204 bits (519), Expect = 3.410e-62 Identity = 104/206 (50.49%), Postives = 143/206 (69.42%), Query Frame = 1
Query: 40 APSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPE--TDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATRFHET 651
A ++SG+RSM+T+ TLMLR KVV+VGDACVGKT++ MF+S YP+ Y MT V+F VK V V + EL+LFDC GQ +FN++ + +ENA++V +V+DV+NR+SF+SCGRWLQ +R+ P++ P+PGV++ANK DLR +++RA V T EGR FA +NGL YFE SA GI+ PFHH+A F+ T
Sbjct: 16 AEAESGLRSMKTSFVPTLMLRCKVVIVGDACVGKTAIASMFESNLQQYPRKYNMTTTVEFTVKLVPVRAEGVNVAAELYLFDCAGQSIFNQVGTNSKNFENASYVIIVYDVANRESFQSCGRWLQQIRSTRPSSGPPIPGVLLANKIDLRSDMLSSRAEV-----TESEGRGFAAENGLAYFECSALQGAGINEPFHHIANTFYVT 216 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig167.3760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig167.3760.1 >prot_E-siliculosus-1a_F_contig167.3760.1 ID=prot_E-siliculosus-1a_F_contig167.3760.1|Name=mRNA_E-siliculosus-1a_F_contig167.3760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=233bp MSRAETILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVback to top mRNA from alignment at E-siliculosus-1a_F_contig167:27857..31628- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig167.3760.1 ID=mRNA_E-siliculosus-1a_F_contig167.3760.1|Name=mRNA_E-siliculosus-1a_F_contig167.3760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3772bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig167:27857..31628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig167:27857..31628- >mRNA_E-siliculosus-1a_F_contig167.3760.1 ID=mRNA_E-siliculosus-1a_F_contig167.3760.1|Name=mRNA_E-siliculosus-1a_F_contig167.3760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig167:27857..31628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |