mRNA_E-siliculosus-1a_F_contig16695.3755.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A455VAK5_9GAMM (ABC transporter domain-containing protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455VAK5_9GAMM) HSP 1 Score: 402 bits (1033), Expect = 5.630e-139 Identity = 196/219 (89.50%), Postives = 208/219 (94.98%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
DQ KKIHRNAVNV+ ITK YDG PLF+R SMTVEAGERIAIIGPNGIGKTTLLKTL+G+L PDAGEVKWT+AA++G+FAQDH+DDFA DATLFEWMS WT GGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT PNV+LMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQP+GIVDFSGSYDDYLRSQGV+
Sbjct: 147 DQNKKIHRNAVNVDSITKGYDGEPLFKRFSMTVEAGERIAIIGPNGIGKTTLLKTLAGDLRPDAGEVKWTDAAELGIFAQDHADDFANDATLFEWMSQWTKGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLTLTNPNVLLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPDGIVDFSGSYDDYLRSQGVI 365
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A1H8LKI3_9GAMM (ATPase components of ABC transporters with duplicated ATPase domains n=122 Tax=root TaxID=1 RepID=A0A1H8LKI3_9GAMM) HSP 1 Score: 400 bits (1027), Expect = 1.260e-135 Identity = 197/219 (89.95%), Postives = 206/219 (94.06%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
DQ KKIHRNAVNV+ ITK YDG PLF+R SMTVEAGERIAIIGPNGIGKTTLLKTL+G+L PDAGEVKWT+AA++GVFAQDH+DDFA DATLFEWM WT GGEQVVRGALGRMLFSSDDI KSVKVISGGEQGRMLFGKL LT PNV+LMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV
Sbjct: 318 DQNKKIHRNAVNVDAITKGYDGEPLFKRFSMTVEAGERIAIIGPNGIGKTTLLKTLAGDLRPDAGEVKWTDAAELGVFAQDHADDFANDATLFEWMGQWTKGGEQVVRGALGRMLFSSDDINKSVKVISGGEQGRMLFGKLTLTNPNVLLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 536
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A5P9ILJ6_9GAMM (Putative ABC transporter ATP-binding protein YheS n=22 Tax=Halomonas TaxID=2745 RepID=A0A5P9ILJ6_9GAMM) HSP 1 Score: 379 bits (973), Expect = 1.550e-127 Identity = 186/219 (84.93%), Postives = 202/219 (92.24%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGP-PLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
+Q KKIHRNAVNV ITK ++ PLFERLSMTVEAGERIAIIGPNGIGKTTLL+TL+GELHPDAG V+WT++A+VGVFAQDH+DDFA DATLFEWM WT GGEQ VRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLALENYPGTL+FVSHDREFVSSLATRI+DM +GI DFSGSYDDYLRSQG+
Sbjct: 310 EQGKKIHRNAVNVEAITKGFEADAPLFERLSMTVEAGERIAIIGPNGIGKTTLLRTLAGELHPDAGAVRWTDSAEVGVFAQDHADDFANDATLFEWMGQWTTGGEQEVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLALTKPNVLLMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVSSLATRILDMSGDGITDFSGSYDDYLRSQGL 528
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A431V4V5_9GAMM (ABC-F family ATPase n=2 Tax=Halomonas TaxID=2745 RepID=A0A431V4V5_9GAMM) HSP 1 Score: 370 bits (950), Expect = 4.520e-124 Identity = 180/218 (82.57%), Postives = 200/218 (91.74%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
+Q ++IHRNAVNV ITK Y G PLFERLS+TVEAGERIAIIGPNGIGKTTLLKTL GEL PDAGEV+WT++A++GVFAQDH DDFA DATLFEWM+ WT+GGEQVVRGALGRMLFSSDDI KSVKVISGGE GRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLAL +YPGTL+FVSHDREFV+SLATRII+M EGI DF+GSYDDYL+SQG+
Sbjct: 310 EQGRRIHRNAVNVEAITKGYGGVPLFERLSLTVEAGERIAIIGPNGIGKTTLLKTLGGELAPDAGEVRWTDSAELGVFAQDHGDDFANDATLFEWMAQWTDGGEQVVRGALGRMLFSSDDIDKSVKVISGGEAGRMLFGKLTLTRPNVLLMDEPTNHLDMESIEALNLALAHYPGTLVFVSHDREFVASLATRIIEMSEEGISDFTGSYDDYLKSQGL 527
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: UPI0005BD974D (ABC-F family ATPase n=1 Tax=Halomonas xinjiangensis TaxID=1166948 RepID=UPI0005BD974D) HSP 1 Score: 370 bits (949), Expect = 6.210e-124 Identity = 177/218 (81.19%), Postives = 200/218 (91.74%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
+Q +KIHRNA+N I K Y PLFERLS+TVEAGERIAIIGPNGIGKTTLLKTLSGEL PDAG VKWT++AD+G+FAQDH+DDFA +A+LF+WM+ W+ GGEQ+VRGALGRMLFSSDDIGKS++V+SGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLAL NYPGTL+FVSHDREFVSSLATRI+DM EGIVDF+GSYDDYLRSQGV
Sbjct: 310 EQNRKIHRNALNAEAIAKGYGETPLFERLSLTVEAGERIAIIGPNGIGKTTLLKTLSGELPPDAGAVKWTDSADLGIFAQDHADDFAHEASLFDWMAQWSEGGEQIVRGALGRMLFSSDDIGKSIRVLSGGEQGRMLFGKLSLTRPNVLLMDEPTNHLDMESIEALNLALANYPGTLIFVSHDREFVSSLATRILDMSEEGIVDFTGSYDDYLRSQGV 527
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: UPI0004236E39 (ABC-F family ATPase n=1 Tax=Halomonas halocynthiae TaxID=176290 RepID=UPI0004236E39) HSP 1 Score: 369 bits (947), Expect = 1.320e-123 Identity = 180/219 (82.19%), Postives = 200/219 (91.32%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYD-GPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
+Q KKIHRNAVNV I+K ++ G PLF+ SMTVEAGERIAIIGPNGIGKTTLLKTL+ ELHPDAG+V+WT++A++GVFAQDHS+DFA DATLFEWM WT GGEQ VRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLALENYPGTL+FVSHDREFVSSLATRI+DM GI DFSG+YD+YLRSQG+
Sbjct: 310 EQNKKIHRNAVNVEAISKGFEEGAPLFKNFSMTVEAGERIAIIGPNGIGKTTLLKTLARELHPDAGDVRWTDSAEIGVFAQDHSNDFANDATLFEWMGQWTTGGEQEVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLALTKPNVLLMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVSSLATRILDMHENGITDFSGTYDEYLRSQGL 528
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A2N7TQD0_9GAMM (ABC-F family ATPase n=14 Tax=Halomonas TaxID=2745 RepID=A0A2N7TQD0_9GAMM) HSP 1 Score: 364 bits (935), Expect = 8.620e-122 Identity = 178/219 (81.28%), Postives = 200/219 (91.32%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGPP-LFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
+Q KKIHRNAVNV +++ Y G L E LSMTVEAGERIAIIGPNGIGKTTLL+TL+GELHP AG V+WT++A++GVFAQDH+DDFA DATLFEWM+ WT+GGEQV+RGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLALE+YPGTL+FVSHDREFV+SLATRI+DM GI DFSGSYDDYLRSQG+
Sbjct: 310 EQGKKIHRNAVNVEALSQGYPGEAALVEGLSMTVEAGERIAIIGPNGIGKTTLLRTLAGELHPQAGAVRWTDSAELGVFAQDHADDFANDATLFEWMAQWTDGGEQVIRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLSLTRPNVLLMDEPTNHLDMESIEALNLALEHYPGTLIFVSHDREFVASLATRILDMSDAGITDFSGSYDDYLRSQGL 528
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A485ED51_PSEAI (ABC transporter ATP-binding protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=A0A485ED51_PSEAI) HSP 1 Score: 348 bits (893), Expect = 1.280e-119 Identity = 166/219 (75.80%), Postives = 193/219 (88.13%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
+Q KK+HR AV V I+K YDG PLF+ LS+ VEAGER+AIIGPNGIGKTTLL+ L G+L D GEVKWT++ADVG FAQDH+DDFA D +LF+WM+ WT GGEQ+VRG LGRMLFS+D+I KSVKVISGGEQGRMLFG+LIL +PNV++MDEPTNHLDMESIEALNLAL+NYPGTL+FVSHDREFVSSLATRII++ G+ DFSGSYDDYLRSQGV+
Sbjct: 17 EQYKKLHRQAVTVENISKGYDGKPLFKGLSLQVEAGERVAIIGPNGIGKTTLLRCLVGDLPVDGGEVKWTDSADVGYFAQDHADDFADDMSLFDWMAQWTQGGEQLVRGTLGRMLFSNDEIKKSVKVISGGEQGRMLFGRLILKRPNVLVMDEPTNHLDMESIEALNLALDNYPGTLIFVSHDREFVSSLATRIIELGENGVTDFSGSYDDYLRSQGVI 235
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A0P7EBQ4_9GAMM (ABC transporter ATP-binding protein n=14 Tax=Bacteria TaxID=2 RepID=A0A0P7EBQ4_9GAMM) HSP 1 Score: 358 bits (920), Expect = 1.540e-119 Identity = 168/219 (76.71%), Postives = 197/219 (89.95%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
+Q KK+H NAV +++++K +DG LFE S TV AGER+AIIGPNGIGKTTLL+TL GE+HPDAGEVKWT+AADVG +AQDH+ DFA D +L++WM+ WT GGEQVVRG LGRMLFS+DDI KSVKVISGGEQGRMLFGKLIL QPNV++MDEPTNHLDMESIEALNLALENYPGTL+FVSHDREFV SLATRII+++ +G+VDFSG+YDDYLRSQGV+
Sbjct: 310 EQTKKVHNNAVMIDKLSKGFDGNTLFENFSFTVAAGERVAIIGPNGIGKTTLLRTLVGEMHPDAGEVKWTDAADVGYYAQDHAHDFANDMSLYDWMAQWTGGGEQVVRGTLGRMLFSNDDIQKSVKVISGGEQGRMLFGKLILKQPNVLVMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVGSLATRIIELKADGVVDFSGTYDDYLRSQGVI 528
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A1I7FD80_9GAMM (ATPase components of ABC transporters with duplicated ATPase domains n=3 Tax=Halomonas TaxID=2745 RepID=A0A1I7FD80_9GAMM) HSP 1 Score: 358 bits (918), Expect = 3.100e-119 Identity = 174/218 (79.82%), Postives = 198/218 (90.83%), Query Frame = 1
Query: 1 DQAKKIHRNAVNVNEITKAYDGP-PLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQG 651
+Q+KKIHRNAVNV +++ Y G PLFE LSMTVEAGERIAIIGPNGIGKTTLLKTL+GEL P AG V+WT++A++GVF Q+HSD+FA ATL+EWM+ WT GGEQV+RGALGRMLFS DDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNH+DMESIEALNLALE+YPGTL+FVSHDREFVSSLATRI+DM EGI+DF+G YDDYLRSQG
Sbjct: 310 EQSKKIHRNAVNVETLSQGYTGEAPLFEGLSMTVEAGERIAIIGPNGIGKTTLLKTLAGELAPLAGGVRWTDSAEIGVFGQEHSDNFANQATLYEWMAQWTTGGEQVIRGALGRMLFSGDDIGKSVKVISGGEQGRMLFGKLALTRPNVLLMDEPTNHMDMESIEALNLALEHYPGTLIFVSHDREFVSSLATRILDMSREGIIDFTGGYDDYLRSQG 527 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig16695.3755.1 >prot_E-siliculosus-1a_F_contig16695.3755.1 ID=prot_E-siliculosus-1a_F_contig16695.3755.1|Name=mRNA_E-siliculosus-1a_F_contig16695.3755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=220bp DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTback to top mRNA from alignment at E-siliculosus-1a_F_contig16695:3..662+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig16695.3755.1 ID=mRNA_E-siliculosus-1a_F_contig16695.3755.1|Name=mRNA_E-siliculosus-1a_F_contig16695.3755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16695:3..662+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16695:3..662+ >mRNA_E-siliculosus-1a_F_contig16695.3755.1 ID=mRNA_E-siliculosus-1a_F_contig16695.3755.1|Name=mRNA_E-siliculosus-1a_F_contig16695.3755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16695:3..662+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |