mRNA_E-siliculosus-1a_F_contig16695.3755.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16695.3755.1
Unique NamemRNA_E-siliculosus-1a_F_contig16695.3755.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A455VAK5_9GAMM (ABC transporter domain-containing protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455VAK5_9GAMM)

HSP 1 Score: 402 bits (1033), Expect = 5.630e-139
Identity = 196/219 (89.50%), Postives = 208/219 (94.98%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
            DQ KKIHRNAVNV+ ITK YDG PLF+R SMTVEAGERIAIIGPNGIGKTTLLKTL+G+L PDAGEVKWT+AA++G+FAQDH+DDFA DATLFEWMS WT GGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT PNV+LMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQP+GIVDFSGSYDDYLRSQGV+
Sbjct:  147 DQNKKIHRNAVNVDSITKGYDGEPLFKRFSMTVEAGERIAIIGPNGIGKTTLLKTLAGDLRPDAGEVKWTDAAELGIFAQDHADDFANDATLFEWMSQWTKGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLTLTNPNVLLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPDGIVDFSGSYDDYLRSQGVI 365          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A1H8LKI3_9GAMM (ATPase components of ABC transporters with duplicated ATPase domains n=122 Tax=root TaxID=1 RepID=A0A1H8LKI3_9GAMM)

HSP 1 Score: 400 bits (1027), Expect = 1.260e-135
Identity = 197/219 (89.95%), Postives = 206/219 (94.06%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
            DQ KKIHRNAVNV+ ITK YDG PLF+R SMTVEAGERIAIIGPNGIGKTTLLKTL+G+L PDAGEVKWT+AA++GVFAQDH+DDFA DATLFEWM  WT GGEQVVRGALGRMLFSSDDI KSVKVISGGEQGRMLFGKL LT PNV+LMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV
Sbjct:  318 DQNKKIHRNAVNVDAITKGYDGEPLFKRFSMTVEAGERIAIIGPNGIGKTTLLKTLAGDLRPDAGEVKWTDAAELGVFAQDHADDFANDATLFEWMGQWTKGGEQVVRGALGRMLFSSDDINKSVKVISGGEQGRMLFGKLTLTNPNVLLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 536          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A5P9ILJ6_9GAMM (Putative ABC transporter ATP-binding protein YheS n=22 Tax=Halomonas TaxID=2745 RepID=A0A5P9ILJ6_9GAMM)

HSP 1 Score: 379 bits (973), Expect = 1.550e-127
Identity = 186/219 (84.93%), Postives = 202/219 (92.24%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGP-PLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
            +Q KKIHRNAVNV  ITK ++   PLFERLSMTVEAGERIAIIGPNGIGKTTLL+TL+GELHPDAG V+WT++A+VGVFAQDH+DDFA DATLFEWM  WT GGEQ VRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLALENYPGTL+FVSHDREFVSSLATRI+DM  +GI DFSGSYDDYLRSQG+
Sbjct:  310 EQGKKIHRNAVNVEAITKGFEADAPLFERLSMTVEAGERIAIIGPNGIGKTTLLRTLAGELHPDAGAVRWTDSAEVGVFAQDHADDFANDATLFEWMGQWTTGGEQEVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLALTKPNVLLMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVSSLATRILDMSGDGITDFSGSYDDYLRSQGL 528          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A431V4V5_9GAMM (ABC-F family ATPase n=2 Tax=Halomonas TaxID=2745 RepID=A0A431V4V5_9GAMM)

HSP 1 Score: 370 bits (950), Expect = 4.520e-124
Identity = 180/218 (82.57%), Postives = 200/218 (91.74%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
            +Q ++IHRNAVNV  ITK Y G PLFERLS+TVEAGERIAIIGPNGIGKTTLLKTL GEL PDAGEV+WT++A++GVFAQDH DDFA DATLFEWM+ WT+GGEQVVRGALGRMLFSSDDI KSVKVISGGE GRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLAL +YPGTL+FVSHDREFV+SLATRII+M  EGI DF+GSYDDYL+SQG+
Sbjct:  310 EQGRRIHRNAVNVEAITKGYGGVPLFERLSLTVEAGERIAIIGPNGIGKTTLLKTLGGELAPDAGEVRWTDSAELGVFAQDHGDDFANDATLFEWMAQWTDGGEQVVRGALGRMLFSSDDIDKSVKVISGGEAGRMLFGKLTLTRPNVLLMDEPTNHLDMESIEALNLALAHYPGTLVFVSHDREFVASLATRIIEMSEEGISDFTGSYDDYLKSQGL 527          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: UPI0005BD974D (ABC-F family ATPase n=1 Tax=Halomonas xinjiangensis TaxID=1166948 RepID=UPI0005BD974D)

HSP 1 Score: 370 bits (949), Expect = 6.210e-124
Identity = 177/218 (81.19%), Postives = 200/218 (91.74%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
            +Q +KIHRNA+N   I K Y   PLFERLS+TVEAGERIAIIGPNGIGKTTLLKTLSGEL PDAG VKWT++AD+G+FAQDH+DDFA +A+LF+WM+ W+ GGEQ+VRGALGRMLFSSDDIGKS++V+SGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLAL NYPGTL+FVSHDREFVSSLATRI+DM  EGIVDF+GSYDDYLRSQGV
Sbjct:  310 EQNRKIHRNALNAEAIAKGYGETPLFERLSLTVEAGERIAIIGPNGIGKTTLLKTLSGELPPDAGAVKWTDSADLGIFAQDHADDFAHEASLFDWMAQWSEGGEQIVRGALGRMLFSSDDIGKSIRVLSGGEQGRMLFGKLSLTRPNVLLMDEPTNHLDMESIEALNLALANYPGTLIFVSHDREFVSSLATRILDMSEEGIVDFTGSYDDYLRSQGV 527          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: UPI0004236E39 (ABC-F family ATPase n=1 Tax=Halomonas halocynthiae TaxID=176290 RepID=UPI0004236E39)

HSP 1 Score: 369 bits (947), Expect = 1.320e-123
Identity = 180/219 (82.19%), Postives = 200/219 (91.32%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYD-GPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
            +Q KKIHRNAVNV  I+K ++ G PLF+  SMTVEAGERIAIIGPNGIGKTTLLKTL+ ELHPDAG+V+WT++A++GVFAQDHS+DFA DATLFEWM  WT GGEQ VRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLALENYPGTL+FVSHDREFVSSLATRI+DM   GI DFSG+YD+YLRSQG+
Sbjct:  310 EQNKKIHRNAVNVEAISKGFEEGAPLFKNFSMTVEAGERIAIIGPNGIGKTTLLKTLARELHPDAGDVRWTDSAEIGVFAQDHSNDFANDATLFEWMGQWTTGGEQEVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLALTKPNVLLMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVSSLATRILDMHENGITDFSGTYDEYLRSQGL 528          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A2N7TQD0_9GAMM (ABC-F family ATPase n=14 Tax=Halomonas TaxID=2745 RepID=A0A2N7TQD0_9GAMM)

HSP 1 Score: 364 bits (935), Expect = 8.620e-122
Identity = 178/219 (81.28%), Postives = 200/219 (91.32%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGPP-LFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGV 654
            +Q KKIHRNAVNV  +++ Y G   L E LSMTVEAGERIAIIGPNGIGKTTLL+TL+GELHP AG V+WT++A++GVFAQDH+DDFA DATLFEWM+ WT+GGEQV+RGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNHLDMESIEALNLALE+YPGTL+FVSHDREFV+SLATRI+DM   GI DFSGSYDDYLRSQG+
Sbjct:  310 EQGKKIHRNAVNVEALSQGYPGEAALVEGLSMTVEAGERIAIIGPNGIGKTTLLRTLAGELHPQAGAVRWTDSAELGVFAQDHADDFANDATLFEWMAQWTDGGEQVIRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLSLTRPNVLLMDEPTNHLDMESIEALNLALEHYPGTLIFVSHDREFVASLATRILDMSDAGITDFSGSYDDYLRSQGL 528          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A485ED51_PSEAI (ABC transporter ATP-binding protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=A0A485ED51_PSEAI)

HSP 1 Score: 348 bits (893), Expect = 1.280e-119
Identity = 166/219 (75.80%), Postives = 193/219 (88.13%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
            +Q KK+HR AV V  I+K YDG PLF+ LS+ VEAGER+AIIGPNGIGKTTLL+ L G+L  D GEVKWT++ADVG FAQDH+DDFA D +LF+WM+ WT GGEQ+VRG LGRMLFS+D+I KSVKVISGGEQGRMLFG+LIL +PNV++MDEPTNHLDMESIEALNLAL+NYPGTL+FVSHDREFVSSLATRII++   G+ DFSGSYDDYLRSQGV+
Sbjct:   17 EQYKKLHRQAVTVENISKGYDGKPLFKGLSLQVEAGERVAIIGPNGIGKTTLLRCLVGDLPVDGGEVKWTDSADVGYFAQDHADDFADDMSLFDWMAQWTQGGEQLVRGTLGRMLFSNDEIKKSVKVISGGEQGRMLFGRLILKRPNVLVMDEPTNHLDMESIEALNLALDNYPGTLIFVSHDREFVSSLATRIIELGENGVTDFSGSYDDYLRSQGVI 235          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A0P7EBQ4_9GAMM (ABC transporter ATP-binding protein n=14 Tax=Bacteria TaxID=2 RepID=A0A0P7EBQ4_9GAMM)

HSP 1 Score: 358 bits (920), Expect = 1.540e-119
Identity = 168/219 (76.71%), Postives = 197/219 (89.95%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQGVV 657
            +Q KK+H NAV +++++K +DG  LFE  S TV AGER+AIIGPNGIGKTTLL+TL GE+HPDAGEVKWT+AADVG +AQDH+ DFA D +L++WM+ WT GGEQVVRG LGRMLFS+DDI KSVKVISGGEQGRMLFGKLIL QPNV++MDEPTNHLDMESIEALNLALENYPGTL+FVSHDREFV SLATRII+++ +G+VDFSG+YDDYLRSQGV+
Sbjct:  310 EQTKKVHNNAVMIDKLSKGFDGNTLFENFSFTVAAGERVAIIGPNGIGKTTLLRTLVGEMHPDAGEVKWTDAADVGYYAQDHAHDFANDMSLYDWMAQWTGGGEQVVRGTLGRMLFSNDDIQKSVKVISGGEQGRMLFGKLILKQPNVLVMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVGSLATRIIELKADGVVDFSGTYDDYLRSQGVI 528          
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Match: A0A1I7FD80_9GAMM (ATPase components of ABC transporters with duplicated ATPase domains n=3 Tax=Halomonas TaxID=2745 RepID=A0A1I7FD80_9GAMM)

HSP 1 Score: 358 bits (918), Expect = 3.100e-119
Identity = 174/218 (79.82%), Postives = 198/218 (90.83%), Query Frame = 1
Query:    1 DQAKKIHRNAVNVNEITKAYDGP-PLFERLSMTVEAGERIAIIGPNGIGKTTLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWTNGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVMLMDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPEGIVDFSGSYDDYLRSQG 651
            +Q+KKIHRNAVNV  +++ Y G  PLFE LSMTVEAGERIAIIGPNGIGKTTLLKTL+GEL P AG V+WT++A++GVF Q+HSD+FA  ATL+EWM+ WT GGEQV+RGALGRMLFS DDIGKSVKVISGGEQGRMLFGKL LT+PNV+LMDEPTNH+DMESIEALNLALE+YPGTL+FVSHDREFVSSLATRI+DM  EGI+DF+G YDDYLRSQG
Sbjct:  310 EQSKKIHRNAVNVETLSQGYTGEAPLFEGLSMTVEAGERIAIIGPNGIGKTTLLKTLAGELAPLAGGVRWTDSAEIGVFGQEHSDNFANQATLYEWMAQWTTGGEQVIRGALGRMLFSGDDIGKSVKVISGGEQGRMLFGKLALTRPNVLLMDEPTNHMDMESIEALNLALEHYPGTLIFVSHDREFVSSLATRILDMSREGIIDFTGGYDDYLRSQG 527          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16695.3755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A455VAK5_9GAMM5.630e-13989.50ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1H8LKI3_9GAMM1.260e-13589.95ATPase components of ABC transporters with duplica... [more]
A0A5P9ILJ6_9GAMM1.550e-12784.93Putative ABC transporter ATP-binding protein YheS ... [more]
A0A431V4V5_9GAMM4.520e-12482.57ABC-F family ATPase n=2 Tax=Halomonas TaxID=2745 R... [more]
UPI0005BD974D6.210e-12481.19ABC-F family ATPase n=1 Tax=Halomonas xinjiangensi... [more]
UPI0004236E391.320e-12382.19ABC-F family ATPase n=1 Tax=Halomonas halocynthiae... [more]
A0A2N7TQD0_9GAMM8.620e-12281.28ABC-F family ATPase n=14 Tax=Halomonas TaxID=2745 ... [more]
A0A485ED51_PSEAI1.280e-11975.80ABC transporter ATP-binding protein n=1 Tax=Pseudo... [more]
A0A0P7EBQ4_9GAMM1.540e-11976.71ABC transporter ATP-binding protein n=14 Tax=Bacte... [more]
A0A1I7FD80_9GAMM3.100e-11979.82ATPase components of ABC transporters with duplica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16695contigE-siliculosus-1a_F_contig16695:3..662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size660
Model size660
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03012
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.S
EggNOG OGs1MU37@1224,1RPN9@1236,1XHGP@135619,COG0488@1,COG0488@2
EggNOG free text desc.ATPase components of ABC transporters with duplicated ATPase domains
GOsGO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0050896
KEGG koko:K06158
Preferred nameybiT
Seed eggNOG ortholog1504981.KO116_3404
Seed ortholog evalue1.7e-114
Seed ortholog score418.7
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928168.8875694-CDS-E-siliculosus-1a_F_contig16695:2..6621622928168.8875694-CDS-E-siliculosus-1a_F_contig16695:2..662Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16695 3..662 +
1696318833.2332673-CDS-E-siliculosus-1a_F_contig16695:2..6621696318833.2332673-CDS-E-siliculosus-1a_F_contig16695:2..662Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16695 3..662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16695.3755.1prot_E-siliculosus-1a_F_contig16695.3755.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16695 3..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16695.3755.1

>prot_E-siliculosus-1a_F_contig16695.3755.1 ID=prot_E-siliculosus-1a_F_contig16695.3755.1|Name=mRNA_E-siliculosus-1a_F_contig16695.3755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=220bp
DQAKKIHRNAVNVNEITKAYDGPPLFERLSMTVEAGERIAIIGPNGIGKT
TLLKTLSGELHPDAGEVKWTEAADVGVFAQDHSDDFAVDATLFEWMSSWT
NGGEQVVRGALGRMLFSSDDIGKSVKVISGGEQGRMLFGKLILTQPNVML
MDEPTNHLDMESIEALNLALENYPGTLLFVSHDREFVSSLATRIIDMQPE
GIVDFSGSYDDYLRSQGVV*
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mRNA from alignment at E-siliculosus-1a_F_contig16695:3..662+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16695.3755.1 ID=mRNA_E-siliculosus-1a_F_contig16695.3755.1|Name=mRNA_E-siliculosus-1a_F_contig16695.3755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16695:3..662+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATCAGGCCAAGAAAATCCACCGCAATGCCGTCAATGTGAATGAGATTAC GAAAGCCTACGACGGCCCGCCGTTGTTCGAGCGTCTTTCTATGACGGTAG AGGCAGGTGAGCGAATTGCCATTATCGGCCCTAACGGCATTGGCAAAACC ACGCTGCTTAAAACCCTGTCCGGTGAGTTACACCCAGATGCTGGCGAAGT GAAATGGACCGAAGCCGCTGACGTGGGTGTTTTTGCCCAGGATCACAGCG ACGATTTTGCCGTCGACGCGACGCTATTTGAGTGGATGTCGAGCTGGACC AATGGCGGCGAACAGGTGGTTCGCGGTGCCCTGGGCCGGATGCTGTTTTC CAGTGACGATATCGGCAAGTCGGTGAAGGTGATTTCCGGTGGTGAGCAGG GGCGTATGCTGTTCGGTAAGTTAATCCTTACCCAGCCCAATGTAATGCTG ATGGATGAGCCGACTAACCACCTGGATATGGAGTCTATCGAGGCATTGAA CCTAGCCTTGGAAAACTACCCAGGTACGCTTCTGTTCGTCAGCCACGACC GTGAGTTTGTATCATCGCTAGCCACGCGCATTATTGATATGCAGCCGGAA GGTATTGTCGATTTCAGCGGCAGCTACGACGACTATCTGCGCAGCCAGGG CGTTGTGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16695:3..662+

>mRNA_E-siliculosus-1a_F_contig16695.3755.1 ID=mRNA_E-siliculosus-1a_F_contig16695.3755.1|Name=mRNA_E-siliculosus-1a_F_contig16695.3755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16695:3..662+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATCAGGCCAAGAAAATCCACCGCAATGCCGTCAATGTGAATGAGATTAC
GAAAGCCTACGACGGCCCGCCGTTGTTCGAGCGTCTTTCTATGACGGTAG
AGGCAGGTGAGCGAATTGCCATTATCGGCCCTAACGGCATTGGCAAAACC
ACGCTGCTTAAAACCCTGTCCGGTGAGTTACACCCAGATGCTGGCGAAGT
GAAATGGACCGAAGCCGCTGACGTGGGTGTTTTTGCCCAGGATCACAGCG
ACGATTTTGCCGTCGACGCGACGCTATTTGAGTGGATGTCGAGCTGGACC
AATGGCGGCGAACAGGTGGTTCGCGGTGCCCTGGGCCGGATGCTGTTTTC
CAGTGACGATATCGGCAAGTCGGTGAAGGTGATTTCCGGTGGTGAGCAGG
GGCGTATGCTGTTCGGTAAGTTAATCCTTACCCAGCCCAATGTAATGCTG
ATGGATGAGCCGACTAACCACCTGGATATGGAGTCTATCGAGGCATTGAA
CCTAGCCTTGGAAAACTACCCAGGTACGCTTCTGTTCGTCAGCCACGACC
GTGAGTTTGTATCATCGCTAGCCACGCGCATTATTGATATGCAGCCGGAA
GGTATTGTCGATTTCAGCGGCAGCTACGACGACTATCTGCGCAGCCAGGG
CGTTGTGTAAGATCAGGCCAAGAAAATCCACCGCAATGCCGTCAATGTGA
ATGAGATTACGAAAGCCTACGACGGCCCGCCGTTGTTCGAGCGTCTTTCT
ATGACGGTAGAGGCAGGTGAGCGAATTGCCATTATCGGCCCTAACGGCAT
TGGCAAAACCACGCTGCTTAAAACCCTGTCCGGTGAGTTACACCCAGATG
CTGGCGAAGTGAAATGGACCGAAGCCGCTGACGTGGGTGTTTTTGCCCAG
GATCACAGCGACGATTTTGCCGTCGACGCGACGCTATTTGAGTGGATGTC
GAGCTGGACCAATGGCGGCGAACAGGTGGTTCGCGGTGCCCTGGGCCGGA
TGCTGTTTTCCAGTGACGATATCGGCAAGTCGGTGAAGGTGATTTCCGGT
GGTGAGCAGGGGCGTATGCTGTTCGGTAAGTTAATCCTTACCCAGCCCAA
TGTAATGCTGATGGATGAGCCGACTAACCACCTGGATATGGAGTCTATCG
AGGCATTGAACCTAGCCTTGGAAAACTACCCAGGTACGCTTCTGTTCGTC
AGCCACGACCGTGAGTTTGTATCATCGCTAGCCACGCGCATTATTGATAT
GCAGCCGGAAGGTATTGTCGATTTCAGCGGCAGCTACGACGACTATCTGC
GCAGCCAGGGCGTTGTGTAA
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