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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 2232 |
| Model size | 2722 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928168.5678604-UTR-E-siliculosus-1a_F_contig1669:10744..10835 | 1622928168.5678604-UTR-E-siliculosus-1a_F_contig1669:10744..10835 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1669 10745..10835 + |
| 1696318833.1168208-UTR-E-siliculosus-1a_F_contig1669:10744..10835 | 1696318833.1168208-UTR-E-siliculosus-1a_F_contig1669:10744..10835 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1669 10745..10835 + |
| 1622928168.5998073-UTR-E-siliculosus-1a_F_contig1669:13067..13466 | 1622928168.5998073-UTR-E-siliculosus-1a_F_contig1669:13067..13466 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1669 13068..13466 + |
| 1696318833.1315982-UTR-E-siliculosus-1a_F_contig1669:13067..13466 | 1696318833.1315982-UTR-E-siliculosus-1a_F_contig1669:13067..13466 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1669 13068..13466 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928168.584389-CDS-E-siliculosus-1a_F_contig1669:10835..13067 | 1622928168.584389-CDS-E-siliculosus-1a_F_contig1669:10835..13067 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1669 10836..13067 + |
| 1696318833.1240993-CDS-E-siliculosus-1a_F_contig1669:10835..13067 | 1696318833.1240993-CDS-E-siliculosus-1a_F_contig1669:10835..13067 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1669 10836..13067 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1669.3753.1 >prot_E-siliculosus-1a_F_contig1669.3753.1 ID=prot_E-siliculosus-1a_F_contig1669.3753.1|Name=mRNA_E-siliculosus-1a_F_contig1669.3753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=744bp
MSPIDETVMFRVIPHGPHTWERQRVSSKLRDSVGAVNWLMGRGVGIADAM
DGGVWASALSWAGEGTRGWPEKDIAVGPVGALLGPGARTLLTAMLSELYG
NVTPAEVDAVLEGELRATDVLFTDVPEWYLSMNYVLTGEGARRATPSLVM
QLTATHTSRMPGAPATEFHSIAPDKPVPSETYMFRWLEQVAGMALTYGLH
AVLVRDQSRRVWAYPPMFIVAGTAAVSFGASCFAAVPSVQSSHEWAVLPV
FRDAGLITVREKVLRNFETPRFLATTRPSSSPDGRLLLSTSSLLSSTETI
LKDSRGVSVGTIRDGPYGWDCTSYSADIVRIQRLINVNKGGAEEWESDAR
TKVVNTYAPGMMKVKRGTPLVYTPPPAAFVSLVLDGASTFYAGVLAVLTF
SSSVTRWGRATFVLEIVAEVGSRVSALTAWSRSPGRTDGNLAGAATALFA
PVHWVLRNAGRDAAADGWLWRAPLRIEAWGALLSVGPLAAAASLEEATSY
QIALLAVISTIAVGSLRCNELWEELMGLPRGQSTGVCVSYTLMYICGLLV
QSSFLVESGVPWWLAAFGVVFGVAEAVTAIRSAVSLMKALEAIGSGRGEV
LRVALSSKGGMLGALTMSGYSHYGDMWDWKIQALEEIDGRLAWSAAPVKS
VAGGDFRGVSFTELGTSEGDIKLLIAKADGGRVPAATHVLARTHRKPSEE
AFVEVMPGVSATAEARSGVDPDYTPLLAIKIGPYYLPVAKGEE* back to topmRNA from alignment at E-siliculosus-1a_F_contig1669:10745..13466+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1669.3753.1 ID=mRNA_E-siliculosus-1a_F_contig1669.3753.1|Name=mRNA_E-siliculosus-1a_F_contig1669.3753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2722bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1669:10745..13466+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGGGAGGTTACAGCACGAGCTTAGTACAGCAGAGCAGCACAAGCTTCGT
CGGCGGGCGGCAACGAGAGAGTGCGCGAGGGATCTCAGAAGATGAGCCCC
ATCGACGAGACGGTAATGTTCCGCGTCATCCCGCATGGACCACACACTTG
GGAGCGACAGCGAGTGAGTTCGAAATTGAGAGACAGTGTCGGCGCGGTCA
ACTGGTTGATGGGGCGAGGCGTGGGAATTGCAGATGCCATGGATGGCGGA
GTCTGGGCCTCGGCGCTGTCGTGGGCAGGGGAAGGGACACGAGGGTGGCC
GGAGAAAGACATCGCCGTCGGACCTGTTGGAGCGCTCCTTGGTCCCGGCG
CCAGAACATTACTGACAGCGATGCTGAGTGAGCTCTATGGTAACGTCACC
CCGGCCGAGGTCGACGCCGTTCTCGAAGGCGAATTGAGAGCAACCGACGT
CCTATTTACCGATGTTCCCGAATGGTATCTATCGATGAACTACGTGTTGA
CCGGTGAGGGGGCCCGGCGAGCCACCCCTTCCTTGGTCATGCAGCTGACG
GCGACTCACACCTCGCGGATGCCGGGCGCACCGGCGACTGAGTTTCATTC
GATTGCGCCGGACAAACCCGTCCCTTCGGAAACGTACATGTTTCGGTGGT
TAGAGCAGGTTGCTGGTATGGCGCTAACGTATGGCCTCCACGCGGTTTTG
GTACGGGACCAGTCCAGGCGGGTCTGGGCCTATCCTCCCATGTTTATTGT
CGCCGGGACGGCCGCGGTAAGTTTCGGCGCAAGCTGTTTCGCTGCGGTAC
CGTCCGTGCAGTCGAGCCATGAGTGGGCAGTACTGCCGGTGTTCAGAGAC
GCCGGACTGATTACGGTAAGGGAAAAAGTGTTGCGAAATTTCGAGACACC
TCGCTTCCTGGCCACTACGCGTCCATCATCCTCTCCCGATGGGCGCCTCC
TTCTGTCCACCAGCTCCTTGCTCTCGTCGACAGAAACAATCCTCAAAGAC
AGTCGAGGAGTTTCCGTCGGCACCATTAGGGATGGTCCATACGGATGGGA
CTGCACATCGTACTCTGCCGACATTGTTCGGATTCAACGGCTGATTAATG
TAAACAAAGGAGGGGCCGAAGAGTGGGAGAGCGACGCTAGGACGAAGGTA
GTCAACACGTACGCTCCCGGGATGATGAAGGTCAAACGCGGAACTCCGCT
GGTCTACACGCCGCCTCCGGCCGCGTTCGTATCGCTGGTACTGGACGGTG
CATCAACGTTCTACGCTGGCGTGCTGGCAGTCCTTACGTTTAGTAGCAGT
GTGACCAGGTGGGGGCGGGCAACGTTTGTACTGGAAATCGTGGCCGAGGT
CGGATCGCGTGTTTCAGCTTTGACAGCTTGGTCTCGATCCCCTGGAAGAA
CCGATGGGAATCTTGCCGGAGCAGCGACAGCTCTATTTGCCCCGGTTCAC
TGGGTTCTGCGGAACGCCGGCCGGGACGCTGCCGCAGATGGATGGCTTTG
GCGAGCCCCGCTTCGGATCGAGGCGTGGGGAGCGTTGCTATCCGTTGGAC
CACTAGCAGCAGCCGCGTCGTTGGAAGAAGCAACCTCGTATCAAATCGCC
TTGCTGGCAGTGATTTCTACGATTGCGGTCGGCTCGCTCCGCTGCAATGA
ACTGTGGGAAGAGCTCATGGGTCTGCCACGGGGTCAGTCTACAGGGGTAT
GTGTAAGCTACACGCTGATGTACATATGCGGGTTGCTTGTGCAAAGCAGC
TTCCTCGTGGAGAGTGGAGTTCCTTGGTGGCTGGCGGCGTTCGGCGTTGT
GTTCGGAGTTGCCGAGGCGGTGACAGCGATACGAAGTGCGGTCAGCTTGA
TGAAAGCTCTGGAGGCGATTGGGTCCGGGCGTGGGGAGGTGCTACGTGTG
GCACTCTCCAGTAAAGGGGGCATGCTCGGTGCGCTAACAATGTCGGGATA
CTCACACTACGGAGACATGTGGGACTGGAAAATCCAGGCCCTCGAGGAAA
TCGATGGGCGATTGGCGTGGTCGGCCGCTCCTGTAAAGTCGGTTGCAGGC
GGAGACTTCCGAGGAGTAAGCTTCACCGAACTCGGCACTAGTGAGGGTGA
TATCAAGCTTCTGATCGCAAAGGCAGATGGCGGTCGCGTTCCCGCCGCTA
CACACGTGCTAGCGCGCACTCACCGCAAACCCTCCGAGGAGGCTTTCGTG
GAGGTGATGCCTGGCGTGTCGGCAACAGCCGAGGCACGCTCAGGCGTCGA
TCCAGACTATACTCCTCTTTTGGCGATTAAGATCGGACCGTACTATCTGC
CTGTTGCCAAGGGTGAAGAATGAAGACTATCTGGGCGAGACTGGTGGTGA
CGCAATGGGATGGGTTCGAACGGAGGGGTGGTCATTTGCGCCACGCGTGC
GGCCACCTTGGCAAACACGCTGCCACGCTTGACGAAGCGGTGCTGAGACG
CAAGTTCTTCGCAATATATATGAACGGGTTGATGGTGTGAGGGGTTTCAC
GTAGGCAAGGTGAAGAAGGTGGTGGTTTGTGTGATATGTGAAGAGTGTAC
TACGACGACTCACTTTCCAGTTTGGTTGGACACAAGTGTGAGTGTTTTCC
TCCTCGCTGCTTGTGAAGTCGATCGACCGCCTCTACCCGCAGCTAACCGT
TGAGCCCCCGAAACTGTTTGCTGTCGGCTATCCTCCCTGCTAACCATTCC
ACGGTGGAGAACAAAATCGAGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1669:10745..13466+ >mRNA_E-siliculosus-1a_F_contig1669.3753.1 ID=mRNA_E-siliculosus-1a_F_contig1669.3753.1|Name=mRNA_E-siliculosus-1a_F_contig1669.3753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4464bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1669:10745..13466+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCCCCATCGACGAGACGGTAATGTTCCGCGTCATCCCGCATGGACC
ACACACTTGGGAGCGACAGCGAGTGAGTTCGAAATTGAGAGACAGTGTCG
GCGCGGTCAACTGGTTGATGGGGCGAGGCGTGGGAATTGCAGATGCCATG
GATGGCGGAGTCTGGGCCTCGGCGCTGTCGTGGGCAGGGGAAGGGACACG
AGGGTGGCCGGAGAAAGACATCGCCGTCGGACCTGTTGGAGCGCTCCTTG
GTCCCGGCGCCAGAACATTACTGACAGCGATGCTGAGTGAGCTCTATGGT
AACGTCACCCCGGCCGAGGTCGACGCCGTTCTCGAAGGCGAATTGAGAGC
AACCGACGTCCTATTTACCGATGTTCCCGAATGGTATCTATCGATGAACT
ACGTGTTGACCGGTGAGGGGGCCCGGCGAGCCACCCCTTCCTTGGTCATG
CAGCTGACGGCGACTCACACCTCGCGGATGCCGGGCGCACCGGCGACTGA
GTTTCATTCGATTGCGCCGGACAAACCCGTCCCTTCGGAAACGTACATGT
TTCGGTGGTTAGAGCAGGTTGCTGGTATGGCGCTAACGTATGGCCTCCAC
GCGGTTTTGGTACGGGACCAGTCCAGGCGGGTCTGGGCCTATCCTCCCAT
GTTTATTGTCGCCGGGACGGCCGCGGTAAGTTTCGGCGCAAGCTGTTTCG
CTGCGGTACCGTCCGTGCAGTCGAGCCATGAGTGGGCAGTACTGCCGGTG
TTCAGAGACGCCGGACTGATTACGGTAAGGGAAAAAGTGTTGCGAAATTT
CGAGACACCTCGCTTCCTGGCCACTACGCGTCCATCATCCTCTCCCGATG
GGCGCCTCCTTCTGTCCACCAGCTCCTTGCTCTCGTCGACAGAAACAATC
CTCAAAGACAGTCGAGGAGTTTCCGTCGGCACCATTAGGGATGGTCCATA
CGGATGGGACTGCACATCGTACTCTGCCGACATTGTTCGGATTCAACGGC
TGATTAATGTAAACAAAGGAGGGGCCGAAGAGTGGGAGAGCGACGCTAGG
ACGAAGGTAGTCAACACGTACGCTCCCGGGATGATGAAGGTCAAACGCGG
AACTCCGCTGGTCTACACGCCGCCTCCGGCCGCGTTCGTATCGCTGGTAC
TGGACGGTGCATCAACGTTCTACGCTGGCGTGCTGGCAGTCCTTACGTTT
AGTAGCAGTGTGACCAGGTGGGGGCGGGCAACGTTTGTACTGGAAATCGT
GGCCGAGGTCGGATCGCGTGTTTCAGCTTTGACAGCTTGGTCTCGATCCC
CTGGAAGAACCGATGGGAATCTTGCCGGAGCAGCGACAGCTCTATTTGCC
CCGGTTCACTGGGTTCTGCGGAACGCCGGCCGGGACGCTGCCGCAGATGG
ATGGCTTTGGCGAGCCCCGCTTCGGATCGAGGCGTGGGGAGCGTTGCTAT
CCGTTGGACCACTAGCAGCAGCCGCGTCGTTGGAAGAAGCAACCTCGTAT
CAAATCGCCTTGCTGGCAGTGATTTCTACGATTGCGGTCGGCTCGCTCCG
CTGCAATGAACTGTGGGAAGAGCTCATGGGTCTGCCACGGGGTCAGTCTA
CAGGGGTATGTGTAAGCTACACGCTGATGTACATATGCGGGTTGCTTGTG
CAAAGCAGCTTCCTCGTGGAGAGTGGAGTTCCTTGGTGGCTGGCGGCGTT
CGGCGTTGTGTTCGGAGTTGCCGAGGCGGTGACAGCGATACGAAGTGCGG
TCAGCTTGATGAAAGCTCTGGAGGCGATTGGGTCCGGGCGTGGGGAGGTG
CTACGTGTGGCACTCTCCAGTAAAGGGGGCATGCTCGGTGCGCTAACAAT
GTCGGGATACTCACACTACGGAGACATGTGGGACTGGAAAATCCAGGCCC
TCGAGGAAATCGATGGGCGATTGGCGTGGTCGGCCGCTCCTGTAAAGTCG
GTTGCAGGCGGAGACTTCCGAGGAGTAAGCTTCACCGAACTCGGCACTAG
TGAGGGTGATATCAAGCTTCTGATCGCAAAGGCAGATGGCGGTCGCGTTC
CCGCCGCTACACACGTGCTAGCGCGCACTCACCGCAAACCCTCCGAGGAG
GCTTTCGTGGAGGTGATGCCTGGCGTGTCGGCAACAGCCGAGGCACGCTC
AGGCGTCGATCCAGACTATACTCCTCTTTTGGCGATTAAGATCGGACCGT
ACTATCTGCCTGTTGCCAAGGGTGAAGAATGAATGAGCCCCATCGACGAG
ACGGTAATGTTCCGCGTCATCCCGCATGGACCACACACTTGGGAGCGACA
GCGAGTGAGTTCGAAATTGAGAGACAGTGTCGGCGCGGTCAACTGGTTGA
TGGGGCGAGGCGTGGGAATTGCAGATGCCATGGATGGCGGAGTCTGGGCC
TCGGCGCTGTCGTGGGCAGGGGAAGGGACACGAGGGTGGCCGGAGAAAGA
CATCGCCGTCGGACCTGTTGGAGCGCTCCTTGGTCCCGGCGCCAGAACAT
TACTGACAGCGATGCTGAGTGAGCTCTATGGTAACGTCACCCCGGCCGAG
GTCGACGCCGTTCTCGAAGGCGAATTGAGAGCAACCGACGTCCTATTTAC
CGATGTTCCCGAATGGTATCTATCGATGAACTACGTGTTGACCGGTGAGG
GGGCCCGGCGAGCCACCCCTTCCTTGGTCATGCAGCTGACGGCGACTCAC
ACCTCGCGGATGCCGGGCGCACCGGCGACTGAGTTTCATTCGATTGCGCC
GGACAAACCCGTCCCTTCGGAAACGTACATGTTTCGGTGGTTAGAGCAGG
TTGCTGGTATGGCGCTAACGTATGGCCTCCACGCGGTTTTGGTACGGGAC
CAGTCCAGGCGGGTCTGGGCCTATCCTCCCATGTTTATTGTCGCCGGGAC
GGCCGCGGTAAGTTTCGGCGCAAGCTGTTTCGCTGCGGTACCGTCCGTGC
AGTCGAGCCATGAGTGGGCAGTACTGCCGGTGTTCAGAGACGCCGGACTG
ATTACGGTAAGGGAAAAAGTGTTGCGAAATTTCGAGACACCTCGCTTCCT
GGCCACTACGCGTCCATCATCCTCTCCCGATGGGCGCCTCCTTCTGTCCA
CCAGCTCCTTGCTCTCGTCGACAGAAACAATCCTCAAAGACAGTCGAGGA
GTTTCCGTCGGCACCATTAGGGATGGTCCATACGGATGGGACTGCACATC
GTACTCTGCCGACATTGTTCGGATTCAACGGCTGATTAATGTAAACAAAG
GAGGGGCCGAAGAGTGGGAGAGCGACGCTAGGACGAAGGTAGTCAACACG
TACGCTCCCGGGATGATGAAGGTCAAACGCGGAACTCCGCTGGTCTACAC
GCCGCCTCCGGCCGCGTTCGTATCGCTGGTACTGGACGGTGCATCAACGT
TCTACGCTGGCGTGCTGGCAGTCCTTACGTTTAGTAGCAGTGTGACCAGG
TGGGGGCGGGCAACGTTTGTACTGGAAATCGTGGCCGAGGTCGGATCGCG
TGTTTCAGCTTTGACAGCTTGGTCTCGATCCCCTGGAAGAACCGATGGGA
ATCTTGCCGGAGCAGCGACAGCTCTATTTGCCCCGGTTCACTGGGTTCTG
CGGAACGCCGGCCGGGACGCTGCCGCAGATGGATGGCTTTGGCGAGCCCC
GCTTCGGATCGAGGCGTGGGGAGCGTTGCTATCCGTTGGACCACTAGCAG
CAGCCGCGTCGTTGGAAGAAGCAACCTCGTATCAAATCGCCTTGCTGGCA
GTGATTTCTACGATTGCGGTCGGCTCGCTCCGCTGCAATGAACTGTGGGA
AGAGCTCATGGGTCTGCCACGGGGTCAGTCTACAGGGGTATGTGTAAGCT
ACACGCTGATGTACATATGCGGGTTGCTTGTGCAAAGCAGCTTCCTCGTG
GAGAGTGGAGTTCCTTGGTGGCTGGCGGCGTTCGGCGTTGTGTTCGGAGT
TGCCGAGGCGGTGACAGCGATACGAAGTGCGGTCAGCTTGATGAAAGCTC
TGGAGGCGATTGGGTCCGGGCGTGGGGAGGTGCTACGTGTGGCACTCTCC
AGTAAAGGGGGCATGCTCGGTGCGCTAACAATGTCGGGATACTCACACTA
CGGAGACATGTGGGACTGGAAAATCCAGGCCCTCGAGGAAATCGATGGGC
GATTGGCGTGGTCGGCCGCTCCTGTAAAGTCGGTTGCAGGCGGAGACTTC
CGAGGAGTAAGCTTCACCGAACTCGGCACTAGTGAGGGTGATATCAAGCT
TCTGATCGCAAAGGCAGATGGCGGTCGCGTTCCCGCCGCTACACACGTGC
TAGCGCGCACTCACCGCAAACCCTCCGAGGAGGCTTTCGTGGAGGTGATG
CCTGGCGTGTCGGCAACAGCCGAGGCACGCTCAGGCGTCGATCCAGACTA
TACTCCTCTTTTGGCGATTAAGATCGGACCGTACTATCTGCCTGTTGCCA
AGGGTGAAGAATGA back to top
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