mRNA_E-siliculosus-1a_F_contig1668.3751.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1668.3751.1
Unique NamemRNA_E-siliculosus-1a_F_contig1668.3751.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1668.3751.1 vs. uniprot
Match: D8LMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP1_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.590e-56
Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 1 
Query:    1 MRLKGDYCFLLALAVSPLAGLVFAQRAGGGLPSAVRHGLTRFAEEDIADAGVGDVHPIDEDDQQVGQDLVDVLEADDQTTVVGDIELGELLCDSLEDAPGASLLRFTISSNETVIAERTSYSSIDGSVLPDGNTRK 408
            M+L G YCFLLAL V       FAQ  GG +PSA R+GL RFAEED+ D GVG VHPI ED+ QV ++LV+VLE D+ TTVVGDIELG+LLCDSLEDA  +SLLRFTISS ETVIAERTSYSSIDGS+LPDGNTRK
Sbjct:    1 MKLAGSYCFLLALCVFLADHFSFAQPTGGRVPSAPRYGLARFAEEDVKDTGVGHVHPIPEDEHQVEEELVEVLETDELTTVVGDIELGDLLCDSLEDASDSSLLRFTISSTETVIAERTSYSSIDGSILPDGNTRK 136
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BLAST of mRNA_E-siliculosus-1a_F_contig1668.3751.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.130e-48
Identity = 94/136 (69.12%), Postives = 107/136 (78.68%), Query Frame = 1 
Query:    1 MRLKGDYCFLLALAVSPLAGLVFAQRAGGGLPSAVRHGLTRFAEEDIADAGVGDVHPIDEDDQQVGQDLVDVLEADDQTTVVGDIELGELLCDSLEDAPGASLLRFTISSNETVIAERTSYSSIDGSVLPDGNTRK 408
            M+L G YCFLLAL V     L FAQ  GG  PSA+R+GL RFAEED+ D GVG +H I ED+ QV + LV+VLE D+ T V+GDIELG+LLCDSLEDA  +SLLRFTISS ETVIAERTSYSSIDG+VLPDGN RK
Sbjct:   87 MKLAGSYCFLLALCVFLADHLAFAQPTGGRAPSALRYGLARFAEEDVKDTGVGHLHAIPEDEHQVEEGLVEVLETDELTAVMGDIELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARK 222
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BLAST of mRNA_E-siliculosus-1a_F_contig1668.3751.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.500e-42
Identity = 85/136 (62.50%), Postives = 101/136 (74.26%), Query Frame = 1 
Query:    1 MRLKGDYCFLLALAVSPLAGLVFAQRAGGGLPSAVRHGLTRFAEEDIADAGVGDVHPIDEDDQQVGQDLVDVLEADDQTTVVGDIELGELLCDSLEDAPGASLLRFTISSNETVIAERTSYSSIDGSVLPDGNTRK 408
            MRL G   F  A+ V+PL  L  AQ   GG+PSA R   TRFAEED++D GVG+VHPI  D++++ Q+LV  LE+D Q TVV  I LGELLCDSLEDA  ++LLRF ISS ETVIAERTSYSSIDG++ PDG TRK
Sbjct:    1 MRLLGGLLF--AVGVAPLLQLTRAQAPDGGIPSATRSVWTRFAEEDVSDVGVGEVHPIASDEEEIEQELVAALESDPQATVVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRK 134
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BLAST of mRNA_E-siliculosus-1a_F_contig1668.3751.1 vs. uniprot
Match: D7FTV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.530e-19
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:  244 VGDIELGELLCDSLEDAPGASLLRFTISSNETVIAERTSYSSIDGSVLPDGNTR 405
            VGDIELGELLCDSLEDA  +SLLRFTISS ETVIAERTSYSSIDGSVL DG TR
Sbjct:   10 VGDIELGELLCDSLEDAADSSLLRFTISSTETVIAERTSYSSIDGSVLSDGITR 63
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BLAST of mRNA_E-siliculosus-1a_F_contig1668.3751.1 vs. uniprot
Match: D8LCP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-13
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:  193 VGQDLVDVLEADDQTTVVGDIELGELLCDSLEDAPGASLLRFTISSNETVIAERTSYSSIDGSVLPDGNTRKVGRRI 423
            V ++L + LE D+Q TV+G+++LGELLCDSL  A  A LL+F +S+NET+IA RTSY+ + G     G    VGRRI
Sbjct:  146 VEKELAETLEVDEQVTVLGEVQLGELLCDSLVQAEDAPLLQFALSANETIIANRTSYTVVSGETFTGG----VGRRI 218
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1668.3751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LMP1_ECTSI1.590e-5672.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF50_9PHAE1.130e-4869.12LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LLU0_ECTSI1.500e-4262.50PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
D7FTV1_ECTSI5.530e-1988.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCP8_ECTSI1.410e-1351.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1668contigE-siliculosus-1a_F_contig1668:19348..20514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size447
Model size525
Exons3
Ec32 orthologEc-02_002260.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1668.3751.1prot_E-siliculosus-1a_F_contig1668.3751.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1668 19426..20514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928168.419257-UTR-E-siliculosus-1a_F_contig1668:19347..194251622928168.419257-UTR-E-siliculosus-1a_F_contig1668:19347..19425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1668 19348..19425 -
1696318833.071126-UTR-E-siliculosus-1a_F_contig1668:19347..194251696318833.071126-UTR-E-siliculosus-1a_F_contig1668:19347..19425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1668 19348..19425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928168.4359484-CDS-E-siliculosus-1a_F_contig1668:19425..195361622928168.4359484-CDS-E-siliculosus-1a_F_contig1668:19425..19536Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1668 19426..19536 -
1696318833.080588-CDS-E-siliculosus-1a_F_contig1668:19425..195361696318833.080588-CDS-E-siliculosus-1a_F_contig1668:19425..19536Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1668 19426..19536 -
1622928168.4540343-CDS-E-siliculosus-1a_F_contig1668:19882..199771622928168.4540343-CDS-E-siliculosus-1a_F_contig1668:19882..19977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1668 19883..19977 -
1696318833.0916944-CDS-E-siliculosus-1a_F_contig1668:19882..199771696318833.0916944-CDS-E-siliculosus-1a_F_contig1668:19882..19977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1668 19883..19977 -
1622928168.4734519-CDS-E-siliculosus-1a_F_contig1668:20273..205141622928168.4734519-CDS-E-siliculosus-1a_F_contig1668:20273..20514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1668 20274..20514 -
1696318833.1000323-CDS-E-siliculosus-1a_F_contig1668:20273..205141696318833.1000323-CDS-E-siliculosus-1a_F_contig1668:20273..20514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1668 20274..20514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1668.3751.1

>prot_E-siliculosus-1a_F_contig1668.3751.1 ID=prot_E-siliculosus-1a_F_contig1668.3751.1|Name=mRNA_E-siliculosus-1a_F_contig1668.3751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MRLKGDYCFLLALAVSPLAGLVFAQRAGGGLPSAVRHGLTRFAEEDIADA
GVGDVHPIDEDDQQVGQDLVDVLEADDQTTVVGDIELGELLCDSLEDAPG
ASLLRFTISSNETVIAERTSYSSIDGSVLPDGNTRKVGRRIRSVTYFS*
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mRNA from alignment at E-siliculosus-1a_F_contig1668:19348..20514-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1668.3751.1 ID=mRNA_E-siliculosus-1a_F_contig1668.3751.1|Name=mRNA_E-siliculosus-1a_F_contig1668.3751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1167bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1668:19348..20514- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGTTGAAAGGAGACTACTGCTTCCTGTTGGCCCTGGCCGTCTCCCC
CCTCGCCGGGCTCGTTTTTGCCCAACGTGCCGGTGGCGGGCTACCATCAG
CCGTTCGTCACGGGTTGACAAGATTCGCCGAGGAGGACATCGCTGACGCG
GGTGTCGGAGACGTACATCCGATCGATGAAGACGACCAACAAGTCGGACA
AGACCTCGTTGACGTGCTCGAGGCCGATGATCAGACCACTGGTGAGATGA
GAAACCCTGTGGGCGCAACAATCATGAGACTGCAAGAGAGGAAAGATAGA
TGTCCGTGTACTGTAGACCACTCGCATTTTCGCTATTCCAACCACTCATG
CATACTTTGGCCACACATACATCGCCAATGAATTTGCACCAATTACAATA
ACCGTTCCATGTAGACTGCACTGCGACCGATTGGCGGGCCGCTTTTCCCC
CATCTCGGAGATCCTATTCCAATCTGCTGTTGGTTGTTCTTTCGAACTCA
CCCACCATTTCCGTGCCGAATCGCACCCTACTATCAGTTGTGGGCGACAT
CGAGCTGGGCGAGTTGCTGTGCGACAGCTTGGAAGATGCTCCGGGCGCTA
GCCTGCTGAGGTTCACGATCAGCTCCAATGAGGTGAAAAGGCCAGCGTGA
AGAAACGCGCTGTTTGTTCCTTAGGCAAGGTGTCAGATCGCGGAAGAATG
CAAAAATGAAGCAAGCAAACCTATGTAATAGAGTATTCCAAGACACAACC
GTCGCAACACGTAACAACGCAGCAGCAGAGGCGCCTTCAAGGCCCCTTGT
AGGCGCGAACAGTCTTCACACTCAAGTCGGGGCGGCACGATCGAAAGGAT
ACCACTGAGTTCCAATAAGAACCATGTTACTGTAGGTCACATAGAATGCA
ATTTGTGCTCTAATCCTGACCGTTCGGCGAATACTTCACCTCAACGGCAC
GCTACAACGTCGACCCCTTTCGTCGCAGACGGTGATAGCCGAGCGTACCT
CGTACTCTTCCATCGACGGCAGCGTTTTGCCTGACGGAAACACGCGCAAG
GTGGGTCGACGCATTCGATCTGTCACGTATTTTTCGTAGGTATGTCTTGG
GGGAGGGGATATCGTAAAGGGTGGCTCGGGGCAGCACATATTTTGTGAAG
TATTCGCGCCGGTGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1668:19348..20514-

>mRNA_E-siliculosus-1a_F_contig1668.3751.1 ID=mRNA_E-siliculosus-1a_F_contig1668.3751.1|Name=mRNA_E-siliculosus-1a_F_contig1668.3751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1668:19348..20514- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGTTGAAAGGAGACTACTGCTTCCTGTTGGCCCTGGCCGTCTCCCC
CCTCGCCGGGCTCGTTTTTGCCCAACGTGCCGGTGGCGGGCTACCATCAG
CCGTTCGTCACGGGTTGACAAGATTCGCCGAGGAGGACATCGCTGACGCG
GGTGTCGGAGACGTACATCCGATCGATGAAGACGACCAACAAGTCGGACA
AGACCTCGTTGACGTGCTCGAGGCCGATGATCAGACCACTGATGAGGTTG
AAAGGAGACTACTGCTTCCTGTTGGCCCTGGCCGTCTCCCCCCTCGCCGG
GCTCGTTTTTGCCCAACGTGCCGGTGGCGGGCTACCATCAGCCGTTCGTC
ACGGGTTGACAAGATTCGCCGAGGAGGACATCGCTGACGCGGGTGTCGGA
GACGTACATCCGATCGATGAAGACGACCAACAAGTCGGACAAGACCTCGT
TGACGTGCTCGAGGCCGATGATCAGACCACTGTTGTGGGCGACATCGAGC
TGGGCGAGTTGCTGTGCGACAGCTTGGAAGATGCTCCGGGCGCTAGCCTG
CTGAGGTTCACGATCAGCTCCAATGAGTTGTGGGCGACATCGAGCTGGGC
GAGTTGCTGTGCGACAGCTTGGAAGATGCTCCGGGCGCTAGCCTGCTGAG
GTTCACGATCAGCTCCAATGAGACGGTGATAGCCGAGCGTACCTCGTACT
CTTCCATCGACGGCAGCGTTTTGCCTGACGGAAACACGCGCAAGGTGGGT
CGACGCATTCGATCTGTCACGTATTTTTCGTAGACGGTGATAGCCGAGCG
TACCTCGTACTCTTCCATCGACGGCAGCGTTTTGCCTGACGGAAACACGC
GCAAGGTGGGTCGACGCATTCGATCTGTCACGTATTTTTCGTAG
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