mRNA_E-siliculosus-1a_F_contig16664.3746.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: A0A060B8K4_9GAMM (MFS transporter n=14 Tax=Halomonas TaxID=2745 RepID=A0A060B8K4_9GAMM) HSP 1 Score: 387 bits (993), Expect = 7.860e-133 Identity = 197/205 (96.10%), Postives = 200/205 (97.56%), Query Frame = 1
Query: 1 KSMPSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLVIQNQREYRPVLMD 615
K MPSGPKGSML LPS+PKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAI GHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGH+AALTLFGVALLGGVVTTL LVIQNQREYRP L+D
Sbjct: 182 KGMPSGPKGSMLRLPSFPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAITGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHSAALTLFGVALLGGVVTTLRLVIQNQREYRPSLID 386
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: UPI001F10AEF5 (MFS transporter n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F10AEF5) HSP 1 Score: 289 bits (739), Expect = 2.580e-94 Identity = 144/193 (74.61%), Postives = 163/193 (84.46%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLVIQNQ 588
P+ K ML LPSYP GA +G AI++AWA VGLVIAILPS L QHGLS WSGFA FGICSCGVLFQPWARKL Y +T LGL ILP AYGL AWGA+ G+L +LLGTI ASSACYGFIYLGGLSGVLAVAG SSTQASAGYFLMAY+GFSIPV+TTG+LIDA+GH ALTLFG+ALLGGV++T++L+ + Q
Sbjct: 193 PNATKSPMLRLPSYPPGAFAYGLAIMLAWAMVGLVIAILPSTLQQHGLSAWSGFATFGICSCGVLFQPWARKLKPYAATRLGLLILPLAYGLTAWGAVHGYLVAVLLGTIAASSACYGFIYLGGLSGVLAVAGTSSTQASAGYFLMAYLGFSIPVITTGILIDAVGHTPALTLFGLALLGGVISTIFLLRKAQ 385
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: A0A0P8CMC3_9GAMM (Arabinose efflux permease n=2 Tax=Halomonas TaxID=2745 RepID=A0A0P8CMC3_9GAMM) HSP 1 Score: 281 bits (720), Expect = 2.180e-91 Identity = 142/187 (75.94%), Postives = 160/187 (85.56%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPS-STQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTL 567
PS K SML LP YP+G+ FG AI++AWATVGLVIAILPSAL+QH LS WSGFA FGICSCGVLFQPWAR+L+ +T LGL ILP AYGLIAWGA+ G+L +LLGT+ ASSACYGFIYLGGLSGVLA+AG S S QASAGYFLMAY+GFSIPV+TTGVLIDA+GH ALTLFG+ALLGGV+ TL
Sbjct: 193 PSPTKRSMLRLPGYPRGSFAFGLAIMVAWATVGLVIAILPSALNQHSLSAWSGFATFGICSCGVLFQPWARRLAPRSATQLGLVILPMAYGLIAWGAVQGYLAAVLLGTVAASSACYGFIYLGGLSGVLAIAGTSTSQQASAGYFLMAYLGFSIPVITTGVLIDAVGHTLALTLFGLALLGGVIITL 379
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: UPI001EEFAEC5 (MFS transporter n=1 Tax=Halomonas profundi TaxID=2852117 RepID=UPI001EEFAEC5) HSP 1 Score: 280 bits (717), Expect = 4.860e-91 Identity = 142/195 (72.82%), Postives = 163/195 (83.59%), Query Frame = 1
Query: 4 SMPSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLVIQNQ 588
S P+ K ML LPS+PKGA+ +G AIL+AWA VGLVIAILPSAL QHGLS WSGFA FGICSCGVLFQPWARKL +T+LGL ILP AY LIAWGAI G+L ++LLGT+ ASSACYGFIYLGGLSGVLA+AG STQASAGYFLMAYIGFSIPV++TG+LIDA+GH ALTLFG+AL+ GV T+ L+ + Q
Sbjct: 187 SAPNPIKNPMLRLPSFPKGALAYGLAILLAWAMVGLVIAILPSALSQHGLSAWSGFATFGICSCGVLFQPWARKLEPRTATVLGLVILPLAYSLIAWGAIHGYLFVVLLGTVAASSACYGFIYLGGLSGVLAIAGELSTQASAGYFLMAYIGFSIPVISTGMLIDAVGHTLALTLFGLALVSGVAVTIGLLRKAQ 381
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: A0A2A3XI05_9GAMM (MFS transporter n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A2A3XI05_9GAMM) HSP 1 Score: 279 bits (714), Expect = 1.710e-90 Identity = 138/193 (71.50%), Postives = 163/193 (84.46%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLVIQNQ 588
P+ +ML LPSYP G + +G AIL+AWATVGLVIAILPS L +HGLS WSGFA+FGICSCGVLFQPWARKL+ +T+LGL ILP AY LIAWGAI G+L ++LLGT+ ASSACYGFIYLGGLSGVL +AG STQASAGYFLMAY+GFSIPV++TG+LIDA+GH ALTLFG+AL+GGVV T+ L+ + Q
Sbjct: 196 PNSVNNAMLRLPSYPPGTLAYGLAILLAWATVGLVIAILPSTLQKHGLSAWSGFAIFGICSCGVLFQPWARKLAPRTATVLGLVILPLAYSLIAWGAIQGYLFVVLLGTVAASSACYGFIYLGGLSGVLEIAGMLSTQASAGYFLMAYMGFSIPVISTGILIDAVGHTLALTLFGLALVGGVVVTIGLLRRAQ 388
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: A0A0D6ECT7_9GAMM (MFS domain-containing protein n=5 Tax=Halomonas TaxID=2745 RepID=A0A0D6ECT7_9GAMM) HSP 1 Score: 278 bits (712), Expect = 3.230e-90 Identity = 142/190 (74.74%), Postives = 161/190 (84.74%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPS-STQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLV 576
P+ K ML LPSYPKGA+ +G AIL+AWATVGLVIAILPSAL+QHGLS WSGFA FGICSCGVLFQPWAR+L +T LGL ILP AY LIAWGA+ G+L +LLGT+ ASSACYGFIYLGGLSGVLA+A S S QASAGYFLMAY+GFSIPV+TTG+LIDA+GH ALTLFG+ALLGGV+ TL L+
Sbjct: 193 PNVTKSPMLRLPSYPKGALCYGLAILLAWATVGLVIAILPSALNQHGLSAWSGFATFGICSCGVLFQPWARRLEPPTATQLGLVILPIAYALIAWGAVHGYLTAVLLGTVAASSACYGFIYLGGLSGVLAIANVSTSQQASAGYFLMAYLGFSIPVITTGILIDAVGHTVALTLFGLALLGGVIATLVLL 382
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: L9UBC2_9GAMM (Major facilitator superfamily, general substrate transporter n=17 Tax=Halomonadaceae TaxID=28256 RepID=L9UBC2_9GAMM) HSP 1 Score: 278 bits (712), Expect = 3.540e-90 Identity = 144/193 (74.61%), Postives = 162/193 (83.94%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSS----TQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLV 576
PS K SML LPSYP+GAI +G AIL+AWA VGLVIAILPSAL QHGLS WSGFA FGICSCGVLFQPWAR+L+ +T LGL ILP AYGLIAWGA+ G+L +LLGT+ ASSACYGFIYLGGLSGVLA+A S+ TQASAGYFLMAY+GFSIPV+TTGVLIDA+GH ALTLFG+ALL GV+ TL L+
Sbjct: 193 PSTTKSSMLRLPSYPQGAISYGLAILLAWALVGLVIAILPSALSQHGLSAWSGFATFGICSCGVLFQPWARRLAPRSATRLGLVILPIAYGLIAWGAVHGYLAAVLLGTVAASSACYGFIYLGGLSGVLAIADGSASQQATQASAGYFLMAYLGFSIPVITTGVLIDAVGHTLALTLFGLALLVGVIATLVLL 385
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: A0A1R4HZ35_9GAMM (Probable major facilitator superfamily (MFS) transporter n=5 Tax=Halomonas TaxID=2745 RepID=A0A1R4HZ35_9GAMM) HSP 1 Score: 273 bits (697), Expect = 4.420e-88 Identity = 134/190 (70.53%), Postives = 158/190 (83.16%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLVI 579
P+ + +M LP YP G + FG AIL+AWATVGLVIAILPS L QHGL+ WSGFA FGICSCGVLFQPWAR L+ ++T+LGL ILP AYGLIAWGA+ G L +LLG + ASSACYGFIYLGGLSGVLA+AGPSSTQ SAGYFLMAY+GFS+PV+TTG L+D++GH AALTLFGVALL G + T+ L++
Sbjct: 171 PAVTQSAMWRLPGYPPGTLSFGLAILLAWATVGLVIAILPSTLSQHGLTPWSGFATFGICSCGVLFQPWARALAPVKATVLGLMILPLAYGLIAWGALQGSLIAVLLGAVAASSACYGFIYLGGLSGVLAIAGPSSTQTSAGYFLMAYVGFSLPVITTGALVDSVGHVAALTLFGVALLVGAIATVSLLL 360
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: A0A0D7UYE5_9GAMM (MFS transporter n=3 Tax=Halomonas TaxID=2745 RepID=A0A0D7UYE5_9GAMM) HSP 1 Score: 271 bits (694), Expect = 1.600e-87 Identity = 137/189 (72.49%), Postives = 159/189 (84.13%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLV 576
PS K S+L LPS+P+G FG AIL+AWATVGLVIAILPSAL +HGLSVWSGFA FGICSCGVLFQPWARKL+ +TLLGLAILP AY LIAWGA+ G+L +L+GT+ ASSACYGFIYLGGLSGVLA + +QASAGYFLMAYIGFS+PV+ TG+LIDA+GH AL+LFG+ALLGGV+ T L+
Sbjct: 192 PSANKRSLLRLPSFPRGTFAFGLAILLAWATVGLVIAILPSALQRHGLSVWSGFATFGICSCGVLFQPWARKLTPRSATLLGLAILPMAYTLIAWGAVQGYLSAVLVGTVAASSACYGFIYLGGLSGVLAAGEAAVSQASAGYFLMAYIGFSLPVIMTGLLIDAVGHVLALSLFGLALLGGVMITALLL 380
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Match: A0A3D4KK87_HALSX (MFS transporter n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A3D4KK87_HALSX) HSP 1 Score: 266 bits (679), Expect = 2.260e-85 Identity = 133/196 (67.86%), Postives = 157/196 (80.10%), Query Frame = 1
Query: 10 PSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSVWSGFAVFGICSCGVLFQPWARKLSSYRSTLLGLAILPPAYGLIAWGAIAGHLPILLLGTIMASSACYGFIYLGGLSGVLAVAGPSSTQASAGYFLMAYIGFSIPVVTTGVLIDALGHNAALTLFGVALLGGVVTTLWLVIQNQREY 597
P+ K +ML LPSYP G + +G AIL+AWATVGLVIAILPSAL HGL+ WSGFA FGICSCGVLFQPWAR L ST+LGL ILP AY +IAWGA+ G L +L+GT+ ASSACYGFIYLGGL GVL +A +STQ SAGYFLMAYIGFS+PV+TTG LIDA+GH AALT+FG+AL G +TT+ L++ +Q Y
Sbjct: 171 PNPNKCAMLRLPSYPPGTLGYGLAILLAWATVGLVIAILPSALHAHGLTAWSGFATFGICSCGVLFQPWARALRPAHSTVLGLVILPIAYTVIAWGAVQGMLVAVLVGTVAASSACYGFIYLGGLKGVLEIAKAASTQVSAGYFLMAYIGFSLPVITTGALIDAVGHVAALTIFGLALSMGAITTIGLLLISQARY 366 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16664.3746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig16664.3746.1 >prot_E-siliculosus-1a_F_contig16664.3746.1 ID=prot_E-siliculosus-1a_F_contig16664.3746.1|Name=mRNA_E-siliculosus-1a_F_contig16664.3746.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=204bp MPSGPKGSMLCLPSYPKGAIRFGFAILIAWATVGLVIAILPSALDQHGLSback to top mRNA from alignment at E-siliculosus-1a_F_contig16664:2..619+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig16664.3746.1 ID=mRNA_E-siliculosus-1a_F_contig16664.3746.1|Name=mRNA_E-siliculosus-1a_F_contig16664.3746.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16664:2..619+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16664:2..619+ >mRNA_E-siliculosus-1a_F_contig16664.3746.1 ID=mRNA_E-siliculosus-1a_F_contig16664.3746.1|Name=mRNA_E-siliculosus-1a_F_contig16664.3746.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16664:2..619+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |