mRNA_E-siliculosus-1a_F_contig16545.3699.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16545.3699.1
Unique NamemRNA_E-siliculosus-1a_F_contig16545.3699.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig16545.3699.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.630e-51
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    1 GLTGSPNEHKFEYVEHLNDIALDCRESNSRTSTTLHGNNLHMNRFKRSYWIGGVAGAARKAEEINRSQEPYWNIVRLLPRLPDFVFAFKCSKRPRELPRKLE 306
            G  GSPNE +F YVEHL+DIALDCRESN RTSTT HGNNLHMNR KR++   GVAGA RKAEEI+RSQEPYW IVR+LP LPDFVFAFK  KRPR+LPRKLE
Sbjct:    9 GYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLE 110
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BLAST of mRNA_E-siliculosus-1a_F_contig16545.3699.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 4.390e-49
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    4 LTGSPNEHKFEYVEHLNDIALDCRESNSRTSTTLHGNNLHMNRFKRSYWIGGVAGAARKAEEINRSQEPYWNIVRLLPRLPDFVFAFKCSKRPRELPRKLE 306
            +TGSP+EH FEYVEHLN IALDCRESN  TSTTLHGNNLHMNR K ++W+ GV GAA KAE +NRSQE YWNIVR LP LPDFVFAFKC+KRPR+  RK+E
Sbjct:   50 VTGSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVE 149
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16545.3699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPQ6_ECTSI1.630e-5178.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPN6_9PHAE4.390e-4976.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16545contigE-siliculosus-1a_F_contig16545:495..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size306
Model size306
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928158.873236-CDS-E-siliculosus-1a_F_contig16545:494..8001622928158.873236-CDS-E-siliculosus-1a_F_contig16545:494..800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16545 495..800 -
1696318828.736991-CDS-E-siliculosus-1a_F_contig16545:494..8001696318828.736991-CDS-E-siliculosus-1a_F_contig16545:494..800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16545 495..800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16545.3699.1prot_E-siliculosus-1a_F_contig16545.3699.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16545 495..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16545.3699.1

>prot_E-siliculosus-1a_F_contig16545.3699.1 ID=prot_E-siliculosus-1a_F_contig16545.3699.1|Name=mRNA_E-siliculosus-1a_F_contig16545.3699.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
GLTGSPNEHKFEYVEHLNDIALDCRESNSRTSTTLHGNNLHMNRFKRSYW
IGGVAGAARKAEEINRSQEPYWNIVRLLPRLPDFVFAFKCSKRPRELPRK
LE
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mRNA from alignment at E-siliculosus-1a_F_contig16545:495..800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16545.3699.1 ID=mRNA_E-siliculosus-1a_F_contig16545.3699.1|Name=mRNA_E-siliculosus-1a_F_contig16545.3699.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16545:495..800- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCT
GAACGACATTGCCCTAGACTGTCGCGAGAGTAATTCAAGGACTTCCACCA
CGTTGCACGGTAACAATCTGCATATGAACAGGTTTAAGCGGTCTTATTGG
ATCGGGGGCGTAGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATC
TCAGGAACCGTACTGGAATATCGTGCGTCTTCTGCCCCGGCTGCCTGATT
TTGTGTTCGCGTTCAAGTGTTCCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16545:495..800-

>mRNA_E-siliculosus-1a_F_contig16545.3699.1 ID=mRNA_E-siliculosus-1a_F_contig16545.3699.1|Name=mRNA_E-siliculosus-1a_F_contig16545.3699.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16545:495..800- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCT
GAACGACATTGCCCTAGACTGTCGCGAGAGTAATTCAAGGACTTCCACCA
CGTTGCACGGTAACAATCTGCATATGAACAGGTTTAAGCGGTCTTATTGG
ATCGGGGGCGTAGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATC
TCAGGAACCGTACTGGAATATCGTGCGTCTTCTGCCCCGGCTGCCTGATT
TTGTGTTCGCGTTCAAGTGTTCCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAGGGTTTGACAGGCTCGCCCAACGAGCACAAGTTTGAGTACGTCGA
GCACCTGAACGACATTGCCCTAGACTGTCGCGAGAGTAATTCAAGGACTT
CCACCACGTTGCACGGTAACAATCTGCATATGAACAGGTTTAAGCGGTCT
TATTGGATCGGGGGCGTAGCTGGCGCGGCACGCAAAGCGGAGGAAATAAA
TCGATCTCAGGAACCGTACTGGAATATCGTGCGTCTTCTGCCCCGGCTGC
CTGATTTTGTGTTCGCGTTCAAGTGTTCCAAACGGCCGCGAGAATTGCCA
CGCAAACTGGAG
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