mRNA_E-siliculosus-1a_F_contig1652.3690.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A6H5JNP1_9PHAE (ENDO3c domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP1_9PHAE) HSP 1 Score: 835 bits (2158), Expect = 8.070e-298 Identity = 449/542 (82.84%), Postives = 460/542 (84.87%), Query Frame = 2
Query: 53 PPPLPFSHHETPAARTQLAANDTRSVVGLPSTTQERQRAAAGDT--AGTRMARRTRSGFCTVKKEKLDDELFGTDTPPSTGTWVVKEEPKSSIRRQTPNANHGGSTLSATSAGGSGDPEPSETSRYFDSSPPVRGRKRKAAASVTGPAXXXXXXXXXXXXXXGAGGGTGKASKLSATPPSATTGVCAVGTQRRSSGRLNAVKKEELTSALELPEPSPSDAKRRTKGDASTNVDCKPRRRRTAVATKGEVCVQASEXXXXXXXXXXXXXXXIEKGEGVRERAVPPRLAEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSWVKKTGPGSPKALAELTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFRMKLEDN 1672
PP LPF HH+ P A +D SVVG+P TTQ+R++AAAG T GTRMARRTR GFC VKKE+LDDELFGTDTPPSTGT +K E KSSIRRQTPN N GGS ATSAGGSG EP ETSRYFDSS PVRGRKRK AASVTGPA G G GTGKASKLSAT PSATTG CAVG +RRSS LNAVKKEELTSALELPEPSPSDAKRRTKGD ST DCKP RRR AVA KGEVCVQASE IEK VRERA+PPRLAEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMA EDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRW LTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHD SACPICSWVKKTGPGSPKALAELTCLNDYLASPTPTKKSSKNAIVYSER LEMEQFRMKLED+
Sbjct: 26 PPLLPFKHHQIPRCACIGAHSDRCSVVGVPITTQKRRQAAAGGTLEVGTRMARRTRFGFCAVKKEELDDELFGTDTPPSTGTCAIKGELKSSIRRQTPNTNRGGSKTPATSAGGSGR-EPPETSRYFDSSLPVRGRKRKVAASVTGPAEGSCTTGSKSRRHRGTGDGTGKASKLSATSPSATTGFCAVGARRRSSRTLNAVKKEELTSALELPEPSPSDAKRRTKGDTSTIGDCKPLRRRAAVAAKGEVCVQASEEGKGKKKARTKAKANIEKRGEVRERAIPPRLAEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAQEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWELTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALAELTCLNDYLASPTPTKKSSKNAIVYSERMLEMEQFRMKLEDS 566
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: D8LEA3_ECTSI (Putative endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA3_ECTSI) HSP 1 Score: 795 bits (2053), Expect = 1.030e-282 Identity = 432/551 (78.40%), Postives = 441/551 (80.04%), Query Frame = 2
Query: 20 NIASRALTFPSPPPLPFSHHETPAARTQLAANDTRSVVGLPSTTQERQRAAAGDTAGTRMARRTRSGFCTVKKEKLDDELFGTDTPPSTGTWVVKEEPKSSIRRQTPNANHGGSTLSATSAGGSGDPEPSETSRYFDSSPPVRGRKRKAAASVTGPAXXXXXXXXXXXXXXGAGGGTGKASKLSATPPSATTGVCAVGTQRRSSGRLNAVKKEELTSALELPEPSPSDAKRRTKGDASTNVDCKPRRRRTAVATKGEVCVQASEXXXXXXXXXXXXXXXIEKGEGVRERAVPPRLAEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSWVKKTGPGSPKALAELTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFRMKLEDN 1672
++ S + PSP P P +H RSVVGLPSTTQERQRAA GDT +EPKSSIRRQTPNAN GGST ATSAGGSGDPEPSETS YFDSSPPVRGRKRKAAASV GPA GAG TGK KLSAT PSATTGVCA GTQRRSSGRLNAVKKEELTSALELPEP PSDAKRRTKGDASTN DCKPRRRR AVATKGEVC QASE IEKGEGVRERAVPPRLAEKAALIIQIMDKLYPDPPIPINH+DSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQ+ IRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHD SACPICSWVKKTGPGSPKALA+LTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFRMKLED+
Sbjct: 16 SLPSTSAVQPSPDPPPRAH------------THKRSVVGLPSTTQERQRAAPGDT----------------------------------------DEPKSSIRRQTPNANQGGSTTFATSAGGSGDPEPSETSHYFDSSPPVRGRKRKAAASVAGPAGGSCTTGGKSRRHRGAGDATGKYPKLSATSPSATTGVCAAGTQRRSSGRLNAVKKEELTSALELPEPPPSDAKRRTKGDASTNGDCKPRRRRAAVATKGEVCAQASEEGKGKKKARTKAKTKIEKGEGVRERAVPPRLAEKAALIIQIMDKLYPDPPIPINHMDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQRTIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALAQLTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFRMKLEDS 514
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A835ZEQ0_9STRA (DNA glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ0_9STRA) HSP 1 Score: 274 bits (701), Expect = 5.820e-83 Identity = 128/201 (63.68%), Postives = 159/201 (79.10%), Query Frame = 2
Query: 929 QIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSWVKKTGPGS 1531
Q++D+LYP+PP+P+NH D FTLLC VLLSAQTTD +VN VT ELF AP P++L+ M+H D+ IIR+VGLAPTKA+HLIA +QQ+ +RF G VP+T E LQ+LPGVGRKTA+VVM AF PAFPVDTHIHRLALRW L+++E N +VE DL A++P ++ +LHLQFIYFGRE+CQAR H S CP+CSW P S
Sbjct: 3 QVLDRLYPEPPMPLNHTDPFTLLCAVLLSAQTTDGKVNEVTTELFARAPTPRALAAMSHSDVLSIIRTVGLAPTKARHLIATAQQLCERFGGAVPRTMEELQTLPGVGRKTASVVMSGAFGVPAFPVDTHIHRLALRWRLSRSETNVERVEHDLRALWPPAAYGRLHLQFIYFGREYCQARNHMPSRCPVCSWADNPLPTS 203
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A356FBE6_9BACT (Endonuclease III n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FBE6_9BACT) HSP 1 Score: 265 bits (678), Expect = 2.780e-80 Identity = 129/200 (64.50%), Postives = 154/200 (77.00%), Query Frame = 2
Query: 908 EKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSW 1507
EKA I I+D+LY DPPIP++H D +TLL VLLSAQTTD +VNLVT ELFR AP P+ + K+ E++ IIR+ GLAP KA+++ ALSQ +LD G+VP E L++LPGVG KTA+VVM+QAF PAFPVDTHIHRLA RWGL+ N KN K E DL AVFPR+SWAKLHLQ IYFGREHC A HD++ CPICSW
Sbjct: 5 EKAEKIHAILDELYEDPPIPLDHKDPYTLLVSVLLSAQTTDKRVNLVTPELFRRAPTPRKMVKLTVEEILAIIRTCGLAPGKARNIHALSQILLDEHGGRVPADMEKLEALPGVGHKTASVVMIQAFEQPAFPVDTHIHRLAARWGLS-NGKNVEKTERDLKAVFPRESWAKLHLQIIYFGREHCPALFHDLTECPICSW 203
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A3A5WA12_9ARCH (Endonuclease III n=2 Tax=Archaea TaxID=2157 RepID=A0A3A5WA12_9ARCH) HSP 1 Score: 261 bits (666), Expect = 1.220e-78 Identity = 118/201 (58.71%), Postives = 160/201 (79.60%), Query Frame = 2
Query: 905 AEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSW 1507
+EKA++I++++++ YP+ P+P++H + F LL VL+SAQTTD +VN VT ELFR P+ QS+SK++ E +Q IIR VGLAPTKA+++ LS+ ++D ++G++P TFEGL+ LPGVG KTA VVM QAF PAFP+DTHIHRLA RWGL+ N N K E+DL A+FP++SW KLHLQ I+FGRE+C AR HD++ CPICSW
Sbjct: 4 SEKASIILEMLEEYYPETPVPLDHENPFQLLVAVLMSAQTTDKKVNQVTPELFRQGPDAQSMSKLSPETIQGIIREVGLAPTKARNISKLSKILVDSYEGQIPNTFEGLEGLPGVGHKTAGVVMAQAFGVPAFPIDTHIHRLAARWGLS-NGTNVVKTEKDLKAIFPKESWNKLHLQIIFFGREYCPARNHDLTKCPICSW 203
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A2E6NQE6_9BACT (Endonuclease III n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6NQE6_9BACT) HSP 1 Score: 256 bits (654), Expect = 9.050e-77 Identity = 125/200 (62.50%), Postives = 153/200 (76.50%), Query Frame = 2
Query: 908 EKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSW 1507
EKA I I+D+LY +PPIP+ H D +TLL VLLSAQTTD +VN+VT ELFR AP P+ + K+ +++ IIR+ GLAP KA+++ ALS+ +L+ GKVP E L++LPGVG KTA+VVM+QAF+ PAFPVDTHIHRLA RWGL+ N KN K E DL AVFP SWAKLHLQ IYFGREHC AR HD++ CPICSW
Sbjct: 5 EKAVKIHAILDELYKNPPIPLVHKDPYTLLVSVLLSAQTTDKRVNMVTPELFRRAPTPRKMVKLDVDEILGIIRTCGLAPGKARNIHALSRILLEEHGGKVPADMEKLEALPGVGHKTASVVMIQAFDRPAFPVDTHIHRLAARWGLS-NGKNVEKTERDLKAVFPERSWAKLHLQIIYFGREHCPARGHDLAQCPICSW 203
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A2E6C705_9EURY (Endonuclease III n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C705_9EURY) HSP 1 Score: 254 bits (648), Expect = 5.220e-76 Identity = 117/201 (58.21%), Postives = 154/201 (76.62%), Query Frame = 2
Query: 905 AEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSW 1507
+EKA I+Q++ + YP+ P+P+ H F LL VL+SAQTTD +VN VT ELFR P+ + ++K+ E +Q+IIR VGLAPTKAK++ L+Q +++ +D ++P TFEGL+SLPGVG KTA VVM QAF PAFP+DTHIHRLA RWGL+ N N K E+DL A+FP++SW KLHLQ I+FGRE+C AR HD++ CPICSW
Sbjct: 4 SEKAPRILQMLXEFYPETPVPLXHETPFQLLIAVLMSAQTTDKKVNEVTPELFRRGPDAEXMAKLTPETIQKIIREVGLAPTKAKNISKLAQILVESYDSEIPNTFEGLESLPGVGHKTAGVVMAQAFGVPAFPIDTHIHRLAARWGLS-NGTNVVKTEKDLKAIFPKESWNKLHLQIIFFGREYCPARNHDLTKCPICSW 203
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A6N2D4Y0_9DELT (Endonuclease III n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6N2D4Y0_9DELT) HSP 1 Score: 254 bits (648), Expect = 6.810e-76 Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 2
Query: 905 AEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSW 1507
AEKA I +++LYP+ PIP++H+D FTLL VLLSAQTTD +VN VT LF VAP P+ + + ED++++IR +GLAP KAK L L +Q+++ G+VP +FE L++LPGVG KTA+VVM QAF PAFPVDTHIHRLA RWGL+ ++ K E DL VFPR+SW +LHLQ I+FGREHC AR HD+SACPICSW
Sbjct: 4 AEKADRIRMQLEELYPETPIPLDHVDPFTLLVAVLLSAQTTDRKVNEVTPRLFAVAPTPERMMALEMEDIRELIRELGLAPQKAKALYGLCRQLVETHGGEVPVSFEALEALPGVGHKTASVVMAQAFGVPAFPVDTHIHRLAARWGLSDG-RSVEKTERDLKRVFPRESWNRLHLQIIFFGREHCPARYHDLSACPICSW 203
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A2E4F9J2_9DELT (Endonuclease III n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E4F9J2_9DELT) HSP 1 Score: 253 bits (647), Expect = 7.060e-76 Identity = 122/200 (61.00%), Postives = 150/200 (75.00%), Query Frame = 2
Query: 908 EKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSW 1507
EKA I ++D+LYP+PPIP++H DSFTLL VLLSAQTTD +VN VT LF P PQ ++ ++ + ++ IR VGLAPTKAK++ AL+Q+++D FD +VP L+SLPGVG KTA+VVM QAF PAFPVDTHIHRLA RWGL+ N KN E DL VFPRD+W + HLQ IYFGRE+C AR HD+S CPICSW
Sbjct: 5 EKADRIGVMLDELYPEPPIPLDHRDSFTLLIAVLLSAQTTDKKVNEVTPALFEAGPTPQRMAALSVDVIRDHIRQVGLAPTKAKNIQALAQRLIDDFDAEVPADLAALESLPGVGHKTASVVMCQAFGVPAFPVDTHIHRLAARWGLS-NGKNVDTTERDLKRVFPRDTWNRRHLQIIYFGREYCPARHHDLSTCPICSW 203
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Match: A0A2E8RYW3_9DELT (Endonuclease III n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8RYW3_9DELT) HSP 1 Score: 253 bits (647), Expect = 9.220e-76 Identity = 118/201 (58.71%), Postives = 151/201 (75.12%), Query Frame = 2
Query: 905 AEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDVSACPICSW 1507
+EKA I++I+++L+P PIP+ H D FTLL V+LSAQTTD +VN VT LF+ AP+P+ ++K+ E +Q++IR +GLAP KA+ L LSQ ++D F+G VP FE LQ LPGVGRKTA V+M QAF PAFPVDTHIHRLA RWGL++ K A E+DL +FPR+SW KLHLQ I+FGR HC AR H++ CPICSW
Sbjct: 4 SEKAIRIMEILEELFPTTPIPLTHTDPFTLLVAVVLSAQTTDKKVNQVTPSLFKQAPDPKRMAKLPVETIQELIREIGLAPQKARALKGLSQMLIDDFEGCVPADFEALQRLPGVGRKTANVIMAQAFGQPAFPVDTHIHRLAARWGLSRG-KTADHTEQDLRKIFPRESWNKLHLQIIFFGRSHCPARYHELEDCPICSW 203 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1652.3690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1652.3690.1 >prot_E-siliculosus-1a_F_contig1652.3690.1 ID=prot_E-siliculosus-1a_F_contig1652.3690.1|Name=mRNA_E-siliculosus-1a_F_contig1652.3690.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=493bp MARRTRSGFCTVKKEKLDDELFGTDTPPSTGTWVVKEEPKSSIRRQTPNAback to top mRNA from alignment at E-siliculosus-1a_F_contig1652:508..6554+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1652.3690.1 ID=mRNA_E-siliculosus-1a_F_contig1652.3690.1|Name=mRNA_E-siliculosus-1a_F_contig1652.3690.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6047bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1652:508..6554+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1652:508..6554+ >mRNA_E-siliculosus-1a_F_contig1652.3690.1 ID=mRNA_E-siliculosus-1a_F_contig1652.3690.1|Name=mRNA_E-siliculosus-1a_F_contig1652.3690.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2958bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1652:508..6554+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |